mRNA_Ecto-sp13_S_contig19728.6368.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19728.6368.1
Unique NamemRNA_Ecto-sp13_S_contig19728.6368.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19728.6368.1 vs. uniprot
Match: D7FP67_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP67_ECTSI)

HSP 1 Score: 199 bits (505), Expect = 2.000e-58
Identity = 94/97 (96.91%), Postives = 96/97 (98.97%), Query Frame = 1 
Query:    1 SGWQDSLLNPANTKYAMEALTNIRLSCCGGGTLIPMVKGIHQVETLDMLRDLHNASAVDLRRIDNFITRATMGEVSSCQGCGEPLQLLHITPCTHLV 291
            SGWQDSLLNPANTKYAMEALTNIRLSCCGGGTLIPMVKGIHQVETL MLRDLH+ASAVDLRRIDNFITRATMGEVSSCQGCGEPLQLLHITPCTHL+
Sbjct:  544 SGWQDSLLNPANTKYAMEALTNIRLSCCGGGTLIPMVKGIHQVETLHMLRDLHDASAVDLRRIDNFITRATMGEVSSCQGCGEPLQLLHITPCTHLI 640
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BLAST of mRNA_Ecto-sp13_S_contig19728.6368.1 vs. uniprot
Match: A0A6H5JNK1_9PHAE (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNK1_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 1.090e-44
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 1 
Query:    1 SGWQDSLLNPANTKYAMEALTNIRLSCCGGGTLIPMVKGIHQVETLDMLRDLHNASAVDLRRIDNFITRATMGEVSSCQ 237
            SGWQDSLLNPANTKYAMEALTNIRLSCCGGGTLIPMVKGIHQVETLDMLRDLH+ASAVDLRRIDNFITRATMGEVSSCQ
Sbjct:  113 SGWQDSLLNPANTKYAMEALTNIRLSCCGGGTLIPMVKGIHQVETLDMLRDLHDASAVDLRRIDNFITRATMGEVSSCQ 191
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BLAST of mRNA_Ecto-sp13_S_contig19728.6368.1 vs. uniprot
Match: A0A7S2KSK3_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KSK3_9STRA)

HSP 1 Score: 121 bits (303), Expect = 6.640e-30
Identity = 54/97 (55.67%), Postives = 68/97 (70.10%), Query Frame = 1 
Query:    1 SGWQDSLLNPANTKYAMEALTNIRLSCCGGGTLIPMVKGIHQVETLDMLRDLHNASAVDLRRIDNFITRATMGEVSSCQGCGEPLQLLHITPCTHLV 291
            SGWQDSLLNP N+KYA EAL N+R+SCCG   ++P +  IH  ETL+MLRD+H  +   +  ++NFI R T GE+S CQ CG  LQ L + PC HLV
Sbjct:  783 SGWQDSLLNPRNSKYANEALINLRISCCGSYQILPSITNIHWSETLEMLRDIHKVNDTSINLVNNFIYRCTNGELSGCQQCGIQLQTLFVIPCGHLV 879
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BLAST of mRNA_Ecto-sp13_S_contig19728.6368.1 vs. uniprot
Match: B8CDY7_THAPS (Bromo domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CDY7_THAPS)

HSP 1 Score: 108 bits (269), Expect = 2.600e-25
Identity = 47/97 (48.45%), Postives = 66/97 (68.04%), Query Frame = 1 
Query:    1 SGWQDSLLNPANTKYAMEALTNIRLSCCGGGTLIPMVKGIHQVETLDMLRDLHNASAVDLRRIDNFITRATMGEVSSCQGCGEPLQLLHITPCTHLV 291
            SGWQDSLLNP  +++A EALTN+R++CCGG  ++P +  +H  ETL +LR  H      +R +++FI RA  G +SSC GCG  +QLL + PC  L+
Sbjct: 1040 SGWQDSLLNPRQSRFASEALTNLRVACCGGCQILPSISNVHWNETLTLLRQRHKVDDTKVRVVNDFIDRAQSGMLSSCMGCGIGIQLLFVVPCGDLL 1136
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BLAST of mRNA_Ecto-sp13_S_contig19728.6368.1 vs. uniprot
Match: A0A835Z414_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z414_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 3.560e-20
Identity = 45/97 (46.39%), Postives = 57/97 (58.76%), Query Frame = 1 
Query:    1 SGWQDSLLNPANTKYAMEALTNIRLSCCGGGTLIPMVKGIHQVETLDMLRDLHNASAVDLRRIDNFITRATMGEVSSCQGCGEPLQLLHITPCTHLV 291
            S W DSLLNP     A EA+TN+RL+CCGGG L       +  ETL ML   H AS  D+ R   ++ R    +V+ C GCG  LQ+L +TPC HL+
Sbjct:  886 SAWDDSLLNPKQRHSANEAVTNVRLACCGGGELHAFATSKNVKETLAMLELKHRASPPDVARAAEYLRRTNAQQVTGCDGCGRLLQILVLTPCVHLL 982
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BLAST of mRNA_Ecto-sp13_S_contig19728.6368.1 vs. uniprot
Match: K0TAG8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TAG8_THAOC)

HSP 1 Score: 88.2 bits (217), Expect = 2.740e-18
Identity = 43/97 (44.33%), Postives = 63/97 (64.95%), Query Frame = 1 
Query:    1 SGWQDSLLNPANTKYAMEALTNIRLSCCGGGTLIPMVKGIHQVETLDMLRDLHNASAVDLRRIDNFITRATMGEVSSCQGCGEPLQLLHITPCTHLV 291
            SG QDSLL+  N KYA +ALTN+R+S CGG  ++P +  ++  ETL MLR+ H  +   + + ++FI RA+ G++S C+ C   LQ L + PC  LV
Sbjct:  932 SGRQDSLLHANNAKYAGQALTNLRISSCGGIRILPTITNVNWDETLSMLRERHGLNENRIAKANDFIHRASSGDLSVCRACAVRLQTLFLMPCGCLV 1028
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BLAST of mRNA_Ecto-sp13_S_contig19728.6368.1 vs. uniprot
Match: A0A7S3PSY7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PSY7_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.850e-15
Identity = 38/97 (39.18%), Postives = 58/97 (59.79%), Query Frame = 1 
Query:    4 GWQDSLLNPANTKYAMEALTNIRLSCCGGGTLIPMVKGIHQVETLDMLRDLHNASAVDLRRIDNFITRATMGEVSSC--QGCGEPLQLLH-ITPCTH 285
            G+ DSLLN  N ++A E + N+RLSCCGGG ++  +   +++E L++L+  H     DLR+   F+++  MGE + C    CG    LL  +TPC H
Sbjct:   58 GFNDSLLNVRNHRFAAEVMRNLRLSCCGGGRMVATLTDKNRLEFLELLKYKHKRPESDLRKAGAFLSKVLMGEKTRCCSGACGHVSLLLPLVTPCVH 154
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BLAST of mRNA_Ecto-sp13_S_contig19728.6368.1 vs. uniprot
Match: A0A7S4DLI8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DLI8_HETAK)

HSP 1 Score: 69.3 bits (168), Expect = 2.810e-12
Identity = 34/79 (43.04%), Postives = 50/79 (63.29%), Query Frame = 1 
Query:   10 QDSLLNPANTKYAMEALTNIRLSCCGGGTLIPMVKGIHQVETLDMLRDLHNASAVDLRRIDNFITRATMGEVSSCQGCG 246
            +DSL NP N ++AMEA+ NI+L+CCGGG ++  +K  +  ET++ LR L  A A    R+  F+ RA  G+ + C G G
Sbjct:  126 KDSLQNPLNRRFAMEAVNNIQLACCGGGKMLVNLKHEYFTETINWLRTL-GAGAAATARVAEFLRRARTGQTTPCGGRG 203
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19728.6368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FP67_ECTSI2.000e-5896.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JNK1_9PHAE1.090e-4498.73SNF2-rel_dom domain-containing protein n=1 Tax=Ect... [more]
A0A7S2KSK3_9STRA6.640e-3055.67Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
B8CDY7_THAPS2.600e-2548.45Bromo domain-containing protein n=1 Tax=Thalassios... [more]
A0A835Z414_9STRA3.560e-2046.39SNF2 family N-terminal domain-containing protein n... [more]
K0TAG8_THAOC2.740e-1844.33Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S3PSY7_9STRA2.850e-1539.18Hypothetical protein (Fragment) n=1 Tax=Aplanochyt... [more]
A0A7S4DLI8_HETAK2.810e-1243.04Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19728contigEcto-sp13_S_contig19728:1966..3247 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score200.7
Seed ortholog evalue3.2e-49
Seed eggNOG ortholog2880.D7FP67
Model size291
KEGG koko:K15505
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005911,GO:0009506,GO:0030054,GO:0055044
Exons3
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG1001@2759
Cds size291
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462995.7422554-CDS-Ecto-sp13_S_contig19728:1965..20191681462995.7422554-CDS-Ecto-sp13_S_contig19728:1965..2019Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19728 1966..2019 -
1681462995.754696-CDS-Ecto-sp13_S_contig19728:2545..27281681462995.754696-CDS-Ecto-sp13_S_contig19728:2545..2728Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19728 2546..2728 -
1681462995.7640777-CDS-Ecto-sp13_S_contig19728:3193..32471681462995.7640777-CDS-Ecto-sp13_S_contig19728:3193..3247Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19728 3194..3247 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19728.6368.1prot_Ecto-sp13_S_contig19728.6368.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19728 1966..3247 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19728.6368.1

>prot_Ecto-sp13_S_contig19728.6368.1 ID=prot_Ecto-sp13_S_contig19728.6368.1|Name=mRNA_Ecto-sp13_S_contig19728.6368.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=97bp
SGWQDSLLNPANTKYAMEALTNIRLSCCGGGTLIPMVKGIHQVETLDMLR
DLHNASAVDLRRIDNFITRATMGEVSSCQGCGEPLQLLHITPCTHLV
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mRNA from alignment at Ecto-sp13_S_contig19728:1966..3247-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19728.6368.1 ID=mRNA_Ecto-sp13_S_contig19728.6368.1|Name=mRNA_Ecto-sp13_S_contig19728.6368.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1282bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19728:1966..3247- (Ectocarpus species13 EcNAP12_S_4_19m)
TCCGGGTGGCAGGACTCGCTTCTCAACCCCGCCAACACGAAGTATGCGAT
GGAGGTAGGCGAGCGGGAGGGGACACGATTACCGTGTGCAGCCTGTACGG
TGGTGTTTACGGAAAAGAACCTTCGACCGCTACAGGTGACTGACCAATGA
ACAGACGCCAGTTGTAGCGGGATACCAGACATGGATACTAACACCCCAAG
AACGCACACATAATCTCTCTCTGTTGTTGTCCCATATGTTGTGGACGTGC
TGTTATTCAGAAGCGTTTGCGACCATGCACTCTAGTAGTGCTTGCATGTA
CGGGTGGGTGTGCTAAATTGCTAGAAAAAGAAAGGTACGTTGGGGCGCTG
TAGAAGCTCGTGAGCATGGATGCTCATCCGCAAGCCTCGCTTCCTTGCGC
TTCTATGGTCCATCTCTCCAGCTGTCTGTCTGTCTGTCTGTCTGTCAGTT
GCGCCTTTCTGGACAAGTGTTTTGCGAAACGGTCCGTCGTGTGTGTATAT
GTCTGTCTGAAAACCGAAGGCCCTGACCAACATCCGGCTGTCGTGCTGCG
GAGGAGGGACCCTCATCCCCATGGTGAAAGGCATACACCAGGTGGAAACC
CTGGACATGCTGAGGGACCTGCACAACGCCAGCGCGGTAGATCTACGTCG
CATTGACAATTTCATCACCAGGGCTACGATGGGAGAGGTTTCTAGCTGCC
AGGTAGGCGTTTCTTCCCTCTAACCAACCAAGGACGATATCGTGTGCTAC
GGGTGCTGCACGGTGTGTTTGATTCGGCCGTCATTCGGGGGGTATGAAAA
TTTGTGCCCTCCGTCGTACCCCCCGGGGGAGTAGGGGTAAAATGGTATTA
CTTTTATGTTGGGAAGACTTCCTGCGAGCAGCGAGAAACAAGTGGTTCGC
CAAGGCTCGTGTGTGACCGACCGATGAGTGGGGGGCGAGGGTGCAACGGA
GCATGTTGCGGTATGTACAATCGCAGCGATAGCAGGATCAACAGCGCCAC
CAATACGGCGCGCGTTGTCTCTTAGTGATGATGGTGATGGTGATCGTGGC
GTCTTTGCCCGGTCTACTTGCTGATGGCGACCCACATTCTTGAGGAACAG
ATCCGAGCTCTGTTGGTTTTGACGTGCCTTTTCTCCCGTTTTCCTATCCT
TCTCCGCTGCTCCCGCTCGACTGCTGTGGTCGTCGTGTTCTCTCTTGGCT
GCCCCGCCTGCTGCTGCTGTTGTGTCAGGGGTGCGGCGAGCCCTTGCAGC
TGCTGCACATCACACCCTGCACTCATCTGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19728:1966..3247-

>mRNA_Ecto-sp13_S_contig19728.6368.1 ID=mRNA_Ecto-sp13_S_contig19728.6368.1|Name=mRNA_Ecto-sp13_S_contig19728.6368.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=291bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19728:1966..3247- (Ectocarpus species13 EcNAP12_S_4_19m)
TCCGGGTGGCAGGACTCGCTTCTCAACCCCGCCAACACGAAGTATGCGAT
GGAGGCCCTGACCAACATCCGGCTGTCGTGCTGCGGAGGAGGGACCCTCA
TCCCCATGGTGAAAGGCATACACCAGGTGGAAACCCTGGACATGCTGAGG
GACCTGCACAACGCCAGCGCGGTAGATCTACGTCGCATTGACAATTTCAT
CACCAGGGCTACGATGGGAGAGGTTTCTAGCTGCCAGGGGTGCGGCGAGC
CCTTGCAGCTGCTGCACATCACACCCTGCACTCATCTGGTG
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