mRNA_Ecto-sp13_S_contig19714.6364.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig19714.6364.1 vs. uniprot
Match: A0A7S2V2V8_9STRA (Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2V8_9STRA) HSP 1 Score: 230 bits (586), Expect = 2.520e-75 Identity = 103/127 (81.10%), Postives = 119/127 (93.70%), Query Frame = 2
Query: 2 PLARTVHGTNPQNLIEKITRQKIYNNLYWKEHCFGLTAETLVDKAMMLTHLGGTFGGNQQPTKFLCLVLKMLQIQPEKEIIIEFIKNEDYKYVRVLGAFYLRLVGTPADIYQYLEPLYNDYRKIRLR 382
PLARTVHGTNPQNL+EKI R KIY ++YWKEHCFGL+AETL+DKAM L H+GGT+GGN++P+KFLCL+LKMLQ+QPEKEI+IE IKNEDYKY+R LGAFYLRLVG PADIYQYLEPLYNDYRK+R+R
Sbjct: 13 PLARTVHGTNPQNLVEKILRMKIYGSIYWKEHCFGLSAETLIDKAMDLGHVGGTYGGNRKPSKFLCLILKMLQLQPEKEIVIELIKNEDYKYIRALGAFYLRLVGRPADIYQYLEPLYNDYRKLRVR 139
BLAST of mRNA_Ecto-sp13_S_contig19714.6364.1 vs. uniprot
Match: A0A6P5GTV5_ANACO (Pre-mRNA-splicing factor 38 n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5GTV5_ANACO) HSP 1 Score: 224 bits (571), Expect = 8.100e-72 Identity = 101/128 (78.91%), Postives = 116/128 (90.62%), Query Frame = 2
Query: 2 PLARTVHGTNPQNLIEKITRQKIYNNLYWKEHCFGLTAETLVDKAMMLTHLGGTFGGNQQPTKFLCLVLKMLQIQPEKEIIIEFIKNEDYKYVRVLGAFYLRLVGTPADIYQYLEPLYNDYRKIRLRL 385
P A+++HGTNPQNL+EKI R KIY N YWKE CFGLTAETLVDKAM L HLGGTFGGN++PT F+CLV+KMLQIQPEK+I++EFIKNEDYKYVRVLGAFY+RL GT AD+YQYLEPLYNDYRK+R +L
Sbjct: 7 PSAKSIHGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNEDYKYVRVLGAFYMRLTGTVADVYQYLEPLYNDYRKLRRKL 134
BLAST of mRNA_Ecto-sp13_S_contig19714.6364.1 vs. uniprot
Match: A0A0V0GSG3_SOLCH (Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0GSG3_SOLCH) HSP 1 Score: 220 bits (561), Expect = 8.930e-72 Identity = 100/129 (77.52%), Postives = 115/129 (89.15%), Query Frame = 2
Query: 2 PLARTVHGTNPQNLIEKITRQKIYNNLYWKEHCFGLTAETLVDKAMMLTHLGGTFGGNQQPTKFLCLVLKMLQIQPEKEIIIEFIKNEDYKYVRVLGAFYLRLVGTPADIYQYLEPLYNDYRKIRLRLT 388
PLA+++ GTNPQNL+EKI R KIY N YWKE CFGLTAETLVDKAM L HLGGTFGGN++P+ F+CLV+KMLQIQPEK+I++EFIKNEDYKYVRVLGAFYLRL GT DIY+YLEPLYNDYRK+R +L
Sbjct: 7 PLAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPSPFICLVMKMLQIQPEKDIVVEFIKNEDYKYVRVLGAFYLRLTGTDIDIYRYLEPLYNDYRKLRRKLA 135
BLAST of mRNA_Ecto-sp13_S_contig19714.6364.1 vs. uniprot
Match: A0A1Q3D6I5_CEPFO (Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3D6I5_CEPFO) HSP 1 Score: 226 bits (577), Expect = 1.890e-71 Identity = 102/130 (78.46%), Postives = 117/130 (90.00%), Query Frame = 2
Query: 2 PLARTVHGTNPQNLIEKITRQKIYNNLYWKEHCFGLTAETLVDKAMMLTHLGGTFGGNQQPTKFLCLVLKMLQIQPEKEIIIEFIKNEDYKYVRVLGAFYLRLVGTPADIYQYLEPLYNDYRKIRLRLTQ 391
P+A+++HGTNPQNLIEKI R KIY N YWKE CFGLTAETLVDKAM L HLGGTFGGN++PT F+CLV+KMLQIQPEKEI+IEFIKNEDYKYVR+LGAFYLR+ GT D+Y+YLEPLYNDYRK+R RL +
Sbjct: 7 PMAKSIHGTNPQNLIEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRILGAFYLRITGTDIDVYRYLEPLYNDYRKLRRRLAE 136
BLAST of mRNA_Ecto-sp13_S_contig19714.6364.1 vs. uniprot
Match: A0A1D1Z5H8_9ARAE (Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1Z5H8_9ARAE) HSP 1 Score: 224 bits (571), Expect = 3.230e-71 Identity = 101/127 (79.53%), Postives = 115/127 (90.55%), Query Frame = 2
Query: 2 PLARTVHGTNPQNLIEKITRQKIYNNLYWKEHCFGLTAETLVDKAMMLTHLGGTFGGNQQPTKFLCLVLKMLQIQPEKEIIIEFIKNEDYKYVRVLGAFYLRLVGTPADIYQYLEPLYNDYRKIRLR 382
P A+++HGTNPQNL+EKI R KIY N YWKE CFGLTAETLVDKAM L HLGGTFGGN++PT F+CLVLKMLQIQPEK+I++EFIKNEDYKYVRVLGAFY+RL GT D+YQYLEPLYNDYRK+RL+
Sbjct: 7 PSAKSIHGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVLKMLQIQPEKDIVVEFIKNEDYKYVRVLGAFYMRLTGTVTDVYQYLEPLYNDYRKLRLK 133
BLAST of mRNA_Ecto-sp13_S_contig19714.6364.1 vs. uniprot
Match: A0A392QKP4_9FABA (Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392QKP4_9FABA) HSP 1 Score: 217 bits (552), Expect = 1.160e-70 Identity = 97/129 (75.19%), Postives = 113/129 (87.60%), Query Frame = 2
Query: 2 PLARTVHGTNPQNLIEKITRQKIYNNLYWKEHCFGLTAETLVDKAMMLTHLGGTFGGNQQPTKFLCLVLKMLQIQPEKEIIIEFIKNEDYKYVRVLGAFYLRLVGTPADIYQYLEPLYNDYRKIRLRLT 388
P A+++ GTNPQNL+EKI R KIY N YWKE CFGLTAETLVDKAM L HLGGT+GGN++PT F+CLV+KMLQIQPEKEI+IEFIKN+DYKYVR+LGAFYLRL G+ D+Y YLEPLYNDYRK+R +L
Sbjct: 10 PAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTYGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNDDYKYVRILGAFYLRLTGSDTDVYHYLEPLYNDYRKLRRKLA 138
BLAST of mRNA_Ecto-sp13_S_contig19714.6364.1 vs. uniprot
Match: UPI001FB0A2BB (LOW QUALITY PROTEIN: pre-mRNA-splicing factor 38-like n=2 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB0A2BB) HSP 1 Score: 225 bits (573), Expect = 1.220e-70 Identity = 101/130 (77.69%), Postives = 116/130 (89.23%), Query Frame = 2
Query: 2 PLARTVHGTNPQNLIEKITRQKIYNNLYWKEHCFGLTAETLVDKAMMLTHLGGTFGGNQQPTKFLCLVLKMLQIQPEKEIIIEFIKNEDYKYVRVLGAFYLRLVGTPADIYQYLEPLYNDYRKIRLRLTQ 391
PLA+ +HGTNPQNL+EKI R KIY N YWKE CFGLTAETLVDKAM L HLGGTFGGN++PT F+CLV+KMLQIQPEK+I++EFIKNEDYKYVRVLGAFYLRL GT D+Y+YLEPLYNDYRK+R +L +
Sbjct: 7 PLAKNIHGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYLEPLYNDYRKLRQKLPE 136
BLAST of mRNA_Ecto-sp13_S_contig19714.6364.1 vs. uniprot
Match: A0A2I0WX09_9ASPA (Pre-mRNA-splicing factor 38 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WX09_9ASPA) HSP 1 Score: 225 bits (573), Expect = 1.900e-70 Identity = 101/129 (78.29%), Postives = 116/129 (89.92%), Query Frame = 2
Query: 2 PLARTVHGTNPQNLIEKITRQKIYNNLYWKEHCFGLTAETLVDKAMMLTHLGGTFGGNQQPTKFLCLVLKMLQIQPEKEIIIEFIKNEDYKYVRVLGAFYLRLVGTPADIYQYLEPLYNDYRKIRLRLT 388
P A+++HGTNPQNL+EKI R KIY N YWKE CFGLTAETLVDKAM L HLGGTFGGN++PT FLCLV+KMLQIQPEKEI++EFIKNEDYKYVR+LGAFYLRL G+ D+YQYLEPLYNDYRK+R +L+
Sbjct: 7 PTAKSIHGTNPQNLVEKIVRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPTPFLCLVMKMLQIQPEKEIVVEFIKNEDYKYVRILGAFYLRLTGSVTDVYQYLEPLYNDYRKLRQKLS 135
BLAST of mRNA_Ecto-sp13_S_contig19714.6364.1 vs. uniprot
Match: A0A3Q7EQ21_SOLLC (Pre-mRNA-splicing factor 38 n=1 Tax=Solanum lycopersicum TaxID=4081 RepID=A0A3Q7EQ21_SOLLC) HSP 1 Score: 218 bits (556), Expect = 1.990e-70 Identity = 99/125 (79.20%), Postives = 113/125 (90.40%), Query Frame = 2
Query: 2 PLARTVHGTNPQNLIEKITRQKIYNNLYWKEHCFGLTAETLVDKAMMLTHLGGTFGGNQQPTKFLCLVLKMLQIQPEKEIIIEFIKNEDYKYVRVLGAFYLRLVGTPADIYQYLEPLYNDYRKIR 376
PLA+++ GTNPQNL+EKI R KIY N YWKE CFGLTAETLVDKAM L HLGGTFGGN++P+ F+CLV+KMLQIQPEK+I++EFIKNEDYKYVRVLGAFYLRL GT DIY+YLEPLYNDYRK+R
Sbjct: 7 PLAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTFGGNRKPSPFICLVMKMLQIQPEKDIVVEFIKNEDYKYVRVLGAFYLRLTGTDIDIYRYLEPLYNDYRKLR 131
BLAST of mRNA_Ecto-sp13_S_contig19714.6364.1 vs. uniprot
Match: A0A0A0LFY3_CUCSA (Pre-mRNA-splicing factor 38 n=2 Tax=Cucumis TaxID=3655 RepID=A0A0A0LFY3_CUCSA) HSP 1 Score: 220 bits (561), Expect = 2.080e-70 Identity = 100/129 (77.52%), Postives = 114/129 (88.37%), Query Frame = 2
Query: 2 PLARTVHGTNPQNLIEKITRQKIYNNLYWKEHCFGLTAETLVDKAMMLTHLGGTFGGNQQPTKFLCLVLKMLQIQPEKEIIIEFIKNEDYKYVRVLGAFYLRLVGTPADIYQYLEPLYNDYRKIRLRLT 388
P A+++ GTNPQNL+EKI R KIY N YWKE CFGLTAETLVDKAM L HLGGT+GGN++PT F+CLV+KMLQIQPEKEI+IEFIKNEDYKYVRVLGAFYLRL GT D+Y+YLEPLYNDYRK+R +L
Sbjct: 7 PAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTYGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYLEPLYNDYRKLRRKLA 135 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19714.6364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig19714.6364.1 >prot_Ecto-sp13_S_contig19714.6364.1 ID=prot_Ecto-sp13_S_contig19714.6364.1|Name=mRNA_Ecto-sp13_S_contig19714.6364.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=131bp SPGTHGAWHKPSELDREDHKAEDLQQLVLEGALLRSYRGNAGRQGHDAHTback to top mRNA from alignment at Ecto-sp13_S_contig19714:608..2623- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig19714.6364.1 ID=mRNA_Ecto-sp13_S_contig19714.6364.1|Name=mRNA_Ecto-sp13_S_contig19714.6364.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2016bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19714:608..2623- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19714:608..2623- >mRNA_Ecto-sp13_S_contig19714.6364.1 ID=mRNA_Ecto-sp13_S_contig19714.6364.1|Name=mRNA_Ecto-sp13_S_contig19714.6364.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19714:608..2623- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |