mRNA_Ecto-sp13_S_contig19630.6327.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19630.6327.1
Unique NamemRNA_Ecto-sp13_S_contig19630.6327.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19630.6327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19630contigEcto-sp13_S_contig19630:1384..1984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size601
Hectar predicted targeting categoryother localisation
Exons1
Cds size441
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462992.740476-UTR-Ecto-sp13_S_contig19630:1383..15431681462992.740476-UTR-Ecto-sp13_S_contig19630:1383..1543Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19630 1384..1543 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462992.7504642-CDS-Ecto-sp13_S_contig19630:1543..19841681462992.7504642-CDS-Ecto-sp13_S_contig19630:1543..1984Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19630 1544..1984 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19630.6327.1prot_Ecto-sp13_S_contig19630.6327.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19630 1544..1984 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19630.6327.1

>prot_Ecto-sp13_S_contig19630.6327.1 ID=prot_Ecto-sp13_S_contig19630.6327.1|Name=mRNA_Ecto-sp13_S_contig19630.6327.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=147bp
MLTLPAMSAAPLPPRPSATAGAGGSPGAASAAGWRGGHLHRACLPPIISQ
SQRGTFTTEKPLLAPPKFRRLLPATLLLAVWCWHWAPWTSENERASVRWS
KRSRLAVTPNEFRAVECVSTVFVVNHRSRSGASQQHECISYDACCAR
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mRNA from alignment at Ecto-sp13_S_contig19630:1384..1984+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19630.6327.1 ID=mRNA_Ecto-sp13_S_contig19630.6327.1|Name=mRNA_Ecto-sp13_S_contig19630.6327.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=601bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19630:1384..1984+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCGCTTACCAGCTCACGCGCATGTTCTCGGCACGGCGTTTACCTGTCTC
CAGGTCGGAGAACATTTTCGACTGCCTGTTCATTACTCAGGTTGCAAAAA
ACTTAGTGTGTGTTCAGAACTGCAGGCATCGACGGCACCGGGGCAGAGTT
GACTTCGCCTATGTTGACGTTACCGGCCATGTCGGCCGCTCCCTTGCCCC
CCAGGCCTTCCGCAACGGCGGGTGCCGGAGGATCTCCGGGCGCCGCGTCC
GCCGCGGGGTGGAGAGGTGGTCATCTTCATCGTGCATGTTTGCCGCCTAT
CATCAGTCAGTCCCAGAGGGGGACCTTCACTACCGAGAAACCTCTGCTCG
CTCCGCCAAAGTTCCGTAGGCTTCTGCCAGCGACCTTGCTCCTGGCCGTT
TGGTGTTGGCATTGGGCTCCATGGACGAGCGAGAACGAGAGAGCCAGCGT
GAGGTGGTCTAAGCGTAGCCGTCTCGCTGTCACACCCAATGAGTTTCGTG
CTGTTGAGTGTGTGTCCACAGTTTTCGTTGTCAACCACCGATCCAGGTCT
GGGGCTAGCCAGCAGCATGAGTGCATATCATATGATGCTTGCTGTGCGCG
G
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19630:1384..1984+

>mRNA_Ecto-sp13_S_contig19630.6327.1 ID=mRNA_Ecto-sp13_S_contig19630.6327.1|Name=mRNA_Ecto-sp13_S_contig19630.6327.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=441bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19630:1384..1984+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTGACGTTACCGGCCATGTCGGCCGCTCCCTTGCCCCCCAGGCCTTC
CGCAACGGCGGGTGCCGGAGGATCTCCGGGCGCCGCGTCCGCCGCGGGGT
GGAGAGGTGGTCATCTTCATCGTGCATGTTTGCCGCCTATCATCAGTCAG
TCCCAGAGGGGGACCTTCACTACCGAGAAACCTCTGCTCGCTCCGCCAAA
GTTCCGTAGGCTTCTGCCAGCGACCTTGCTCCTGGCCGTTTGGTGTTGGC
ATTGGGCTCCATGGACGAGCGAGAACGAGAGAGCCAGCGTGAGGTGGTCT
AAGCGTAGCCGTCTCGCTGTCACACCCAATGAGTTTCGTGCTGTTGAGTG
TGTGTCCACAGTTTTCGTTGTCAACCACCGATCCAGGTCTGGGGCTAGCC
AGCAGCATGAGTGCATATCATATGATGCTTGCTGTGCGCGG
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