prot_Ecto-sp13_S_contig1959.6314.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1959.6314.1
Unique Nameprot_Ecto-sp13_S_contig1959.6314.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length504
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1959.6314.1 vs. uniprot
Match: A0A6H5L4Q4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Q4_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 4.950e-50
Identity = 89/96 (92.71%), Postives = 91/96 (94.79%), Query Frame = 0 
Query:  343 LGILLCQDNHLSLDTLIEIDYAMGRTKRPVRDLVGQVQRSMDTQNSLSKGVETGQQTKVTGVPHGGEPSVKLAPGQETSIQVSFGRKDNIIGSIPV 438
            LGILLCQDNHLS DTLIEIDYAM R KRPVRDLVGQVQRS+DTQN LSKGVETGQQTKV GVPHGGEPSV+LAPGQETSIQVSFGRKDNIIGSIPV
Sbjct:   11 LGILLCQDNHLSADTLIEIDYAMARPKRPVRDLVGQVQRSIDTQNFLSKGVETGQQTKVAGVPHGGEPSVQLAPGQETSIQVSFGRKDNIIGSIPV 106
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BLAST of mRNA_Ecto-sp13_S_contig1959.6314.1 vs. uniprot
Match: F0YJL1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJL1_AURAN)

HSP 1 Score: 60.1 bits (144), Expect = 5.770e-6
Identity = 30/90 (33.33%), Postives = 52/90 (57.78%), Query Frame = 0 
Query:  412 VKLAPGQETSIQVSFGRKDNIIGSIPVTNETCLDEARALIDPLLRCSERAYGFLSTLGG-VIPTEDEQARRVVWDCKAPVRLRPASWVAI 500
            + L P Q  ++QVS+GR+ N+IG++  +  T L E R LI   L  ++ +Y  ++  G    P  +E  R V+ DC   ++LRP++W+ +
Sbjct:  391 ILLHPDQNANVQVSYGRRPNVIGNLRCSATTSLAEMRYLITKNLSLADESYLMIAHDGTRAFPRHEEDKRHVLLDCGHNLQLRPSTWLTL 480
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BLAST of mRNA_Ecto-sp13_S_contig1959.6314.1 vs. uniprot
Match: D7FW80_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW80_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 1.710e-5
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 0 
Query:   76 VPLLRCDGTGISTIRALSLKRCGIGDAG 103
            +PLLR DGTGISTIRALSLKRCGIGDAG
Sbjct:    1 MPLLRSDGTGISTIRALSLKRCGIGDAG 28
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BLAST of mRNA_Ecto-sp13_S_contig1959.6314.1 vs. uniprot
Match: A0A7S4HWD3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HWD3_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 9.540e-5
Identity = 34/72 (47.22%), Postives = 41/72 (56.94%), Query Frame = 0 
Query:   54 SSTTSVDCSLNPDLKDEGARLLVPLLRCDGTGISTIRALSLKRCGIGDAGATALAQGLLGNAVLEQLNLTGN 125
            SS   +D S   D+ DEGA  L  +LR   +   +IR LSL+ CGIGDAG  AL Q  +  A LE L L GN
Sbjct:   91 SSLHRLDLSYTFDMGDEGAYALADVLRIAPSETFSIRELSLRNCGIGDAGFVALGQAAMHCARLEVLELGGN 162
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1959.6314.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L4Q4_9PHAE4.950e-5092.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F0YJL1_AURAN5.770e-633.33Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
D7FW80_ECTSI1.710e-592.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4HWD3_9STRA9.540e-547.22Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 284..311
e-value: 0.46
score: 19.5
coord: 172..199
e-value: 2.2
score: 14.7
coord: 312..339
e-value: 15.0
score: 8.9
coord: 144..171
e-value: 2.8
score: 13.9
coord: 25..52
e-value: 130.0
score: 2.1
coord: 200..227
e-value: 7.6
score: 10.9
coord: 114..140
e-value: 27.0
score: 7.0
coord: 256..283
e-value: 0.24
score: 20.5
coord: 228..255
e-value: 0.0063
score: 25.7
coord: 86..113
e-value: 0.18
score: 20.9
NoneNo IPR availablePANTHERPTHR24113FAMILY NOT NAMEDcoord: 60..273
coord: 25..195
coord: 267..360
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 13..367
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 139..391
e-value: 6.6E-45
score: 155.1
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 86..138
e-value: 2.0E-11
score: 45.7
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 2..85
e-value: 9.3E-7
score: 30.5
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 284..306
e-value: 0.028
score: 14.5
coord: 87..108
e-value: 0.0011
score: 18.8
coord: 311..324
e-value: 1.1
score: 9.4
coord: 174..190
e-value: 0.082
score: 13.0
coord: 114..135
e-value: 0.0011
score: 18.9
coord: 228..250
e-value: 0.0012
score: 18.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1959contigEcto-sp13_S_contig1959:4876..9577 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1959.6314.1mRNA_Ecto-sp13_S_contig1959.6314.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1959 4864..9577 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1959.6314.1 ID=prot_Ecto-sp13_S_contig1959.6314.1|Name=mRNA_Ecto-sp13_S_contig1959.6314.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=504bp
MELQDRDKIFDGTAVRKLAQTWSKDPHFSSLNLSAHNIGAGAAETLATIL
RERSSTTSVDCSLNPDLKDEGARLLVPLLRCDGTGISTIRALSLKRCGIG
DAGATALAQGLLGNAVLEQLNLTGNLIGDAGAIAIVASGVGPSGGFLLDL
WLSSNRVGVTGAEGMAAALAKSPELRELHLSGNPLGNAGVPTLVKGAVAG
RRLRGLYVGGCCVSDNGAKETANALQTSLHLETLCLGHNTIGNDGASALA
RVLADNHALRRLLLPCNMLKAAGGKAIAAMLLSNDTLLCLDISNNRLGAT
GLAALATAIAKNSTLLELDLSGCGGTETSFRAVARAVEANNTLGILLCQD
NHLSLDTLIEIDYAMGRTKRPVRDLVGQVQRSMDTQNSLSKGVETGQQTK
VTGVPHGGEPSVKLAPGQETSIQVSFGRKDNIIGSIPVTNETCLDEARAL
IDPLLRCSERAYGFLSTLGGVIPTEDEQARRVVWDCKAPVRLRPASWVAI
RHM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt