mRNA_Ecto-sp13_S_contig19580.6310.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19580.6310.1
Unique NamemRNA_Ecto-sp13_S_contig19580.6310.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig19580.6310.1 vs. uniprot
Match: A0A6H5KXU0_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXU0_9PHAE)

HSP 1 Score: 291 bits (744), Expect = 8.620e-89
Identity = 141/145 (97.24%), Postives = 143/145 (98.62%), Query Frame = 1
Query:   10 LEKVDVIHCDLKPENILLQHAKRSNIKVIDFGSSCRSNNKMYSYIQSRFYRSPEVMLGLPYTTAIDMWSLGCILVEMHTGEPLFAGVDQFDQMCRIVSVLGVTPPDVVERSPSTHRGQFFEVDESDSGDEYNDVDGMDEDGGGCS 444
            L +VDVIHCDLKPENILLQHAKRSNIKVIDFGSSCRSNNKMYSYIQSRFYRSPEVMLGLPYTTAIDMWSLGCILVEMHTGEPLFAGVDQFDQMCRIVSVLGVTPPDVVERSPSTHRGQFFEVD+SDSGDE NDVDGMDEDGGGCS
Sbjct:  492 LPQVDVIHCDLKPENILLQHAKRSNIKVIDFGSSCRSNNKMYSYIQSRFYRSPEVMLGLPYTTAIDMWSLGCILVEMHTGEPLFAGVDQFDQMCRIVSVLGVTPPDVVERSPSTHRGQFFEVDDSDSGDEDNDVDGMDEDGGGCS 636          
BLAST of mRNA_Ecto-sp13_S_contig19580.6310.1 vs. uniprot
Match: D7FJN6_ECTSI (Similar to Dyrk1a-prov protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN6_ECTSI)

HSP 1 Score: 242 bits (617), Expect = 1.280e-72
Identity = 122/145 (84.14%), Postives = 126/145 (86.90%), Query Frame = 1
Query:   10 LEKVDVIHCDLKPENILLQHAKRSNIKVIDFGSSCRSNNKMYSYIQSRFYRSPEVMLGLPYTTAIDMWSLGCILVEMHTGEPLFAGVDQFDQMCRIVSVLGVTPPDVVERSPSTHRGQFFEVDESDSGDEYNDVDGMDEDGGGCS 444
            L +VDVIHCDLKPENILLQHAKRSNIKVIDFGSSCRSNNKMYSYIQSRFYRSPEVMLGLPYTTAIDMWSLGCILVEMHTGEPLFAGVDQFDQMCRIVSVLGV                FF+V++SDSGDE NDV GMDEDGGGCS
Sbjct:  486 LPQVDVIHCDLKPENILLQHAKRSNIKVIDFGSSCRSNNKMYSYIQSRFYRSPEVMLGLPYTTAIDMWSLGCILVEMHTGEPLFAGVDQFDQMCRIVSVLGV----------------FFQVNDSDSGDENNDVHGMDEDGGGCS 614          
BLAST of mRNA_Ecto-sp13_S_contig19580.6310.1 vs. uniprot
Match: A0A7S0C5Q0_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C5Q0_9STRA)

HSP 1 Score: 202 bits (513), Expect = 1.520e-60
Identity = 92/118 (77.97%), Postives = 103/118 (87.29%), Query Frame = 1
Query:   19 VDVIHCDLKPENILLQHAKRSNIKVIDFGSSCRSNNKMYSYIQSRFYRSPEVMLGLPYTTAIDMWSLGCILVEMHTGEPLFAGVDQFDQMCRIVSVLGVTPPDVVERSPSTHRGQFFE 372
            VD+IHCDLKPENILL+H KRS +KV+DFGSSCRSN +MY YIQSRFYRSPEVMLGLPYT AIDMWSLGCILVEMHTGEPLF+G DQFDQM +IV +LG+ P  ++ERS   HR QFFE
Sbjct:  100 VDIIHCDLKPENILLRHPKRSGVKVVDFGSSCRSNKQMYKYIQSRFYRSPEVMLGLPYTVAIDMWSLGCILVEMHTGEPLFSGSDQFDQMQKIVKILGMIPHSMIERSSDNHRLQFFE 217          
BLAST of mRNA_Ecto-sp13_S_contig19580.6310.1 vs. uniprot
Match: A0A1E7F676_9STRA (Kinase-like protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F676_9STRA)

HSP 1 Score: 194 bits (493), Expect = 9.180e-59
Identity = 89/120 (74.17%), Postives = 104/120 (86.67%), Query Frame = 1
Query:   13 EKVDVIHCDLKPENILLQHAKRSNIKVIDFGSSCRSNNKMYSYIQSRFYRSPEVMLGLPYTTAIDMWSLGCILVEMHTGEPLFAGVDQFDQMCRIVSVLGVTPPDVVERSPSTHRGQFFE 372
            ++VDVIHCDLKPENILL+H K+S +KVIDFGSSCRSN +MYSYIQSRFYRSPEV+LGLPY  +ID+WSLGCIL EMHTGEPLF+G DQFDQM +IV VLG+ P  ++E+S   HR QFFE
Sbjct:  140 KEVDVIHCDLKPENILLRHPKKSGVKVIDFGSSCRSNKRMYSYIQSRFYRSPEVILGLPYAVSIDVWSLGCILAEMHTGEPLFSGSDQFDQMQKIVKVLGMIPDHMLEQSSDQHRLQFFE 259          
BLAST of mRNA_Ecto-sp13_S_contig19580.6310.1 vs. uniprot
Match: A0A7S1BC25_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BC25_9STRA)

HSP 1 Score: 199 bits (506), Expect = 9.330e-59
Identity = 89/118 (75.42%), Postives = 106/118 (89.83%), Query Frame = 1
Query:   19 VDVIHCDLKPENILLQHAKRSNIKVIDFGSSCRSNNKMYSYIQSRFYRSPEVMLGLPYTTAIDMWSLGCILVEMHTGEPLFAGVDQFDQMCRIVSVLGVTPPDVVERSPSTHRGQFFE 372
            VD+IHCDLKPENILL+H KRS +KVIDFGSSC+SN +MYSYIQSRFYRSPEVMLGLPYT +IDMWSLGCILVEMHTGEPLF+G DQFDQ+ ++V VLG+ P +++++SP  HR QFF+
Sbjct:  269 VDIIHCDLKPENILLRHPKRSAVKVIDFGSSCKSNQQMYSYIQSRFYRSPEVMLGLPYTVSIDMWSLGCILVEMHTGEPLFSGSDQFDQIQKLVEVLGMIPREMIDKSPEKHRVQFFD 386          
BLAST of mRNA_Ecto-sp13_S_contig19580.6310.1 vs. uniprot
Match: A0A1Z5JTN3_FISSO (Dual specificity tyrosine-phosphorylation-regulated kinase 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JTN3_FISSO)

HSP 1 Score: 198 bits (504), Expect = 6.320e-58
Identity = 92/125 (73.60%), Postives = 109/125 (87.20%), Query Frame = 1
Query:   19 VDVIHCDLKPENILLQHAKRSNIKVIDFGSSCRSNNKMYSYIQSRFYRSPEVMLGLPYTTAIDMWSLGCILVEMHTGEPLFAGVDQFDQMCRIVSVLGVTPPDVVERSPSTHRGQFFEVDESDSG 393
            VDVIHCDLKPENILL+H K+S +KVIDFGSSCRSN +MYSYIQSRFYRSPEVMLGLPY+ AIDMWSLGCILVEMHTGEPLF+G DQFDQM +IV  LG+ P  +++R+   +R QFF++++S SG
Sbjct:  326 VDVIHCDLKPENILLRHPKKSGVKVIDFGSSCRSNKRMYSYIQSRFYRSPEVMLGLPYSVAIDMWSLGCILVEMHTGEPLFSGSDQFDQMQKIVKTLGMVPSAMLDRANEQNRQQFFDLEKSPSG 450          
BLAST of mRNA_Ecto-sp13_S_contig19580.6310.1 vs. uniprot
Match: B8CFV3_THAPS (Dual-specificity tyrosine-phosphorylation regulated kinase 1a-like protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CFV3_THAPS)

HSP 1 Score: 194 bits (492), Expect = 1.720e-57
Identity = 88/119 (73.95%), Postives = 104/119 (87.39%), Query Frame = 1
Query:   16 KVDVIHCDLKPENILLQHAKRSNIKVIDFGSSCRSNNKMYSYIQSRFYRSPEVMLGLPYTTAIDMWSLGCILVEMHTGEPLFAGVDQFDQMCRIVSVLGVTPPDVVERSPSTHRGQFFE 372
            ++D+IHCDLKPENILL+H KRS IKVIDFGSSC+S+ +MYSYIQSRFYRSPEVMLGLPYT AIDMWSLGCILVEMHTGEPLF+G DQFDQM +IV++LG+ P  ++  + +  R QFFE
Sbjct:  212 EIDIIHCDLKPENILLRHPKRSGIKVIDFGSSCKSSKRMYSYIQSRFYRSPEVMLGLPYTVAIDMWSLGCILVEMHTGEPLFSGTDQFDQMQKIVAILGMIPDQMLLSAEADKRNQFFE 330          
BLAST of mRNA_Ecto-sp13_S_contig19580.6310.1 vs. uniprot
Match: A0A7S4EM05_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EM05_9STRA)

HSP 1 Score: 191 bits (484), Expect = 2.890e-57
Identity = 90/126 (71.43%), Postives = 106/126 (84.13%), Query Frame = 1
Query:    1 LFFLEK--VDVIHCDLKPENILLQHAKRSNIKVIDFGSSCRSNNKMYSYIQSRFYRSPEVMLGLPYTTAIDMWSLGCILVEMHTGEPLFAGVDQFDQMCRIVSVLGVTPPDVVERSPSTHRGQFFE 372
            L FL +  VDVIHCDLKPENILL+H K+S +KVIDFGSSCRS+ +MYSYIQSRFYRSPEV+LGLPY  +IDMWSLGCIL EMHTGEPLF+G DQFDQM +IV +LG+ P  ++++S   HR QFFE
Sbjct:   84 LLFLARQDVDVIHCDLKPENILLRHPKKSGVKVIDFGSSCRSDRRMYSYIQSRFYRSPEVILGLPYAVSIDMWSLGCILAEMHTGEPLFSGSDQFDQMQKIVRLLGMMPDHMLQQSSDQHRLQFFE 209          
BLAST of mRNA_Ecto-sp13_S_contig19580.6310.1 vs. uniprot
Match: A0A448Z4Z8_9STRA (Protein kinase domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z4Z8_9STRA)

HSP 1 Score: 192 bits (489), Expect = 4.600e-57
Identity = 91/126 (72.22%), Postives = 106/126 (84.13%), Query Frame = 1
Query:    1 LFFLEK--VDVIHCDLKPENILLQHAKRSNIKVIDFGSSCRSNNKMYSYIQSRFYRSPEVMLGLPYTTAIDMWSLGCILVEMHTGEPLFAGVDQFDQMCRIVSVLGVTPPDVVERSPSTHRGQFFE 372
            L FL +  VDVIHCDLKPENILL+H K+S +KVIDFGSSCRS+ +MYSYIQSRFYRSPEV+LGLPY  +IDMWSLGCIL EMHTGEPLF+G DQFDQM +IV +LG+ P  ++E+S   HR QFFE
Sbjct:  168 LLFLARQDVDVIHCDLKPENILLRHPKKSGVKVIDFGSSCRSDRRMYSYIQSRFYRSPEVILGLPYAVSIDMWSLGCILAEMHTGEPLFSGSDQFDQMQKIVKLLGMVPDHMLEQSSDQHRLQFFE 293          
BLAST of mRNA_Ecto-sp13_S_contig19580.6310.1 vs. uniprot
Match: I2CQM2_NANGC (Dual-specificity kinase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQM2_NANGC)

HSP 1 Score: 191 bits (484), Expect = 6.580e-57
Identity = 87/118 (73.73%), Postives = 101/118 (85.59%), Query Frame = 1
Query:   19 VDVIHCDLKPENILLQHAKRSNIKVIDFGSSCRSNNKMYSYIQSRFYRSPEVMLGLPYTTAIDMWSLGCILVEMHTGEPLFAGVDQFDQMCRIVSVLGVTPPDVVERSPSTHRGQFFE 372
            VD+IHCDLKPENILL+H KRS IK+IDFGSSCRS+ +MYSYIQSRFYRSPEVMLGLPY+ AIDMWSLGC+LVEMHTGEPLF G DQ DQM R+V VLG+ P  ++E++P+  R   FE
Sbjct:   85 VDIIHCDLKPENILLRHPKRSGIKLIDFGSSCRSHKRMYSYIQSRFYRSPEVMLGLPYSVAIDMWSLGCVLVEMHTGEPLFGGTDQHDQMRRLVEVLGLPPLSMLEKAPAAARDTLFE 202          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19580.6310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KXU0_9PHAE8.620e-8997.24Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FJN6_ECTSI1.280e-7284.14Similar to Dyrk1a-prov protein n=1 Tax=Ectocarpus ... [more]
A0A7S0C5Q0_9STRA1.520e-6077.97Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A1E7F676_9STRA9.180e-5974.17Kinase-like protein (Fragment) n=1 Tax=Fragilariop... [more]
A0A7S1BC25_9STRA9.330e-5975.42Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A1Z5JTN3_FISSO6.320e-5873.60Dual specificity tyrosine-phosphorylation-regulate... [more]
B8CFV3_THAPS1.720e-5773.95Dual-specificity tyrosine-phosphorylation regulate... [more]
A0A7S4EM05_9STRA2.890e-5771.43Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A448Z4Z8_9STRA4.600e-5772.22Protein kinase domain-containing protein n=1 Tax=P... [more]
I2CQM2_NANGC6.580e-5773.73Dual-specificity kinase n=1 Tax=Nannochloropsis ga... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19580contigEcto-sp13_S_contig19580:1765..3221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score245.0
Seed ortholog evalue2.4e-62
Seed eggNOG ortholog2880.D7FJN6
Model size480
KEGG koko:K08825
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.protein kinase activity
EggNOG OGsKOG0667@1,KOG0667@2759
EC2.7.12.1
Cds size480
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462991.430853-CDS-Ecto-sp13_S_contig19580:1764..18931681462991.430853-CDS-Ecto-sp13_S_contig19580:1764..1893Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19580 1765..1893 +
1681462991.4411173-CDS-Ecto-sp13_S_contig19580:2598..27841681462991.4411173-CDS-Ecto-sp13_S_contig19580:2598..2784Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19580 2599..2784 +
1681462991.4492118-CDS-Ecto-sp13_S_contig19580:3056..32211681462991.4492118-CDS-Ecto-sp13_S_contig19580:3056..3221Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19580 3057..3221 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19580.6310.1prot_Ecto-sp13_S_contig19580.6310.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19580 1765..3221 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19580.6310.1

>prot_Ecto-sp13_S_contig19580.6310.1 ID=prot_Ecto-sp13_S_contig19580.6310.1|Name=mRNA_Ecto-sp13_S_contig19580.6310.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=160bp
LFFLEKVDVIHCDLKPENILLQHAKRSNIKVIDFGSSCRSNNKMYSYIQS
RFYRSPEVMLGLPYTTAIDMWSLGCILVEMHTGEPLFAGVDQFDQMCRIV
SVLGVTPPDVVERSPSTHRGQFFEVDESDSGDEYNDVDGMDEDGGGCSGS
DGGGGGGRAG
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mRNA from alignment at Ecto-sp13_S_contig19580:1765..3221+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19580.6310.1 ID=mRNA_Ecto-sp13_S_contig19580.6310.1|Name=mRNA_Ecto-sp13_S_contig19580.6310.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1457bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19580:1765..3221+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTGTTCTTTTTGGAAAAGGTGGACGTCATCCACTGCGATCTCAAGCCGGA GAACATTCTCCTTCAGCACGCCAAGCGATCCAACATCAAGGTCATCGACT TCGGAAGCTCTTGCCGCTCGAACAACAAGGTAATCACCGTCACCCGTGTT GTGCTTGGCCATTCAAATTCCAGGTGGTTTCCATCAGAGTACATGTGGTA CCCTAGTACATGGTTTATATACTTGTCCACGCAGACAGCGGGGCGTCTGT TTGTCGTTTTTTTCTCCTCGTTTTCTCCAAGAGTGCGCGTCTTGTTCGTT TGTCCAGGAAGACTATCGTTGCAGTTCCGCCATGGTATTGCCCGTGTGAT TTATTGGAAACACAGTGGTATCCTCGCGGCGTGGATCCGGAAAATTGTGT GCTTGGTGTTGCATCGCTTTCTGGGCGCTTCGTCAAACTGACGGCACGCA GCTCCTATCGGTCGCTCCCAACACTCCATGGCCTCGTCGATTTAGAAGTG TTTTGGAGCCGTCTGTAGTACTTGGTTTCGCCGTTCACATCAAGGTCAAA GTTCCGGTCAATATTCCCGTACCGTACATCCTTGTGCTTGGTAACGGTAA TGGCTCCATATCCTTGACTAGAAATCGTGCCAACATATCCCCTACTTGTC GCCCCGCAGAGAGGCAGCCGCCTCCGTCTGCTCGATGCAACGAGGTACTT CTACTTGAGCAGAGACCGCTTGCTTTTTTTTTTTGGTGCAACAGAATAAA ATATCTTGTCGCTTATCACGTACGGTTGGTTCCGCTACCCGCGCCGTCGA TTCGCCTGTCCGTTTTCTTTTTTTGTTGTGTCAGATGTACTCGTACATCC AGTCTCGATTCTACCGGTCCCCAGAAGTGATGCTGGGGCTGCCCTACACG ACCGCGATCGACATGTGGTCGCTGGGGTGTATCTTGGTGGAGATGCACAC GGGAGAGCCGCTGTTTGCGGGAGTGGATCAGTTCGACCAGATGTGCCGCA TTGTGTCCGTCTTAGGCGTGGTGAGTTGAGACAGCAGTATACTACTGCCC GAGAAACACCGCAACAGTTTGTGGCTGTTGGGAGCTTTACCCGTTTTGTT CAGCCGTCACCCAAACAACCCTGAGCCGGCCCCGAACCCCAGCCCGGCCC AACGGTAGCGTTGTGCTAACTCCCGACGCTTGTCTCCACCAAGCGCTACA GCTGCCTAACCTTCCCTACGCCCCCCCCTCACCCCTCCCCCTCCCACCGT TCTTGATATATTTGTTGCATGGCGCCCCCCGTTTCGCACCAGACCCCACC CGATGTCGTGGAGCGTTCACCTTCGACGCACCGAGGGCAGTTTTTTGAGG TAGATGAAAGCGACAGCGGGGACGAATACAACGATGTCGACGGTATGGAC GAGGACGGCGGGGGGTGCTCTGGGAGCGACGGCGGAGGAGGTGGAGGGCG GGCGGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19580:1765..3221+

>mRNA_Ecto-sp13_S_contig19580.6310.1 ID=mRNA_Ecto-sp13_S_contig19580.6310.1|Name=mRNA_Ecto-sp13_S_contig19580.6310.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=480bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19580:1765..3221+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTGTTCTTTTTGGAAAAGGTGGACGTCATCCACTGCGATCTCAAGCCGGA
GAACATTCTCCTTCAGCACGCCAAGCGATCCAACATCAAGGTCATCGACT
TCGGAAGCTCTTGCCGCTCGAACAACAAGATGTACTCGTACATCCAGTCT
CGATTCTACCGGTCCCCAGAAGTGATGCTGGGGCTGCCCTACACGACCGC
GATCGACATGTGGTCGCTGGGGTGTATCTTGGTGGAGATGCACACGGGAG
AGCCGCTGTTTGCGGGAGTGGATCAGTTCGACCAGATGTGCCGCATTGTG
TCCGTCTTAGGCGTGACCCCACCCGATGTCGTGGAGCGTTCACCTTCGAC
GCACCGAGGGCAGTTTTTTGAGGTAGATGAAAGCGACAGCGGGGACGAAT
ACAACGATGTCGACGGTATGGACGAGGACGGCGGGGGGTGCTCTGGGAGC
GACGGCGGAGGAGGTGGAGGGCGGGCGGGC
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