mRNA_Ecto-sp13_S_contig19570.6307.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19570.6307.1
Unique NamemRNA_Ecto-sp13_S_contig19570.6307.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19570.6307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19570contigEcto-sp13_S_contig19570:228..866 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size285
Hectar predicted targeting categorymitochondrion
Exons2
Cds size282
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462991.277416-CDS-Ecto-sp13_S_contig19570:227..3141681462991.277416-CDS-Ecto-sp13_S_contig19570:227..314Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19570 228..314 -
1681462991.2861965-CDS-Ecto-sp13_S_contig19570:669..8641681462991.2861965-CDS-Ecto-sp13_S_contig19570:669..864Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19570 670..864 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462991.294519-UTR-Ecto-sp13_S_contig19570:864..8661681462991.294519-UTR-Ecto-sp13_S_contig19570:864..866Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19570 865..866 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19570.6307.1prot_Ecto-sp13_S_contig19570.6307.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19570 228..864 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19570.6307.1

>prot_Ecto-sp13_S_contig19570.6307.1 ID=prot_Ecto-sp13_S_contig19570.6307.1|Name=mRNA_Ecto-sp13_S_contig19570.6307.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=94bp
MYWLGRCTVCQLRPFVRVPLCICISVRDCSGCACRRRMHCIFGLAIFLST
TAYDRRKLGRRLGFNISFSRVLRCPSNQDRRKTKSIHQRGTLRQ
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mRNA from alignment at Ecto-sp13_S_contig19570:228..866-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19570.6307.1 ID=mRNA_Ecto-sp13_S_contig19570.6307.1|Name=mRNA_Ecto-sp13_S_contig19570.6307.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=639bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19570:228..866- (Ectocarpus species13 EcNAP12_S_4_19m)
TCATGTACTGGCTTGGACGGTGCACAGTATGTCAACTTCGGCCCTTTGTA
CGCGTGCCTCTCTGCATCTGCATCTCGGTACGAGACTGCTCTGGATGTGC
TTGCCGTCGTCGGATGCATTGCATCTTCGGTCTAGCAATCTTCTTGTCAA
CCACTGCCTACGACAGGCGAAAGCTGGGGCGGAGATTAGGATTTAATGTG
AGCCCGTGACCGCTGTTGACATGATAAGCCGCACGAAGCTTTGACTGTGA
AAAAACCTATGGGGCGCTGCTGTAGTATCGTTCTGTCCGACGTGTCAGTT
CTTGGGTCGGGAAGGCGTGGCTTCCAGTGAGAGTCCTATCACCACTCGTT
GTGCGTTTCTACGCTTGACTCGGTGGCACTTGCGCACGAGTCTGTATCCT
GAGGCTGAGCTCCTACCAGGCAAAACTTCCACGTGTAGAGTTAAGTACGG
CCGGAAGCTCGCGTTGGTCATTTTTGTCTCGCTCATCCCATCGGCGATGA
ACCCCAAGGACGTGCTTCAATCGTATCTTCAACTGTCTGCTCAACTTTGC
AGATCTCTTTTTCGCGCGTTCTCCGTTGCCCAAGCAACCAAGACAGGCGA
AAGACGAAAAGCATCCACCAAAGAGGAACTTTAAGGCAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19570:228..866-

>mRNA_Ecto-sp13_S_contig19570.6307.1 ID=mRNA_Ecto-sp13_S_contig19570.6307.1|Name=mRNA_Ecto-sp13_S_contig19570.6307.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=282bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19570:228..866- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACTGGCTTGGACGGTGCACAGTATGTCAACTTCGGCCCTTTGTACG
CGTGCCTCTCTGCATCTGCATCTCGGTACGAGACTGCTCTGGATGTGCTT
GCCGTCGTCGGATGCATTGCATCTTCGGTCTAGCAATCTTCTTGTCAACC
ACTGCCTACGACAGGCGAAAGCTGGGGCGGAGATTAGGATTTAATATCTC
TTTTTCGCGCGTTCTCCGTTGCCCAAGCAACCAAGACAGGCGAAAGACGA
AAAGCATCCACCAAAGAGGAACTTTAAGGCAA
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