mRNA_Ecto-sp13_S_contig19567.6305.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19567.6305.1
Unique NamemRNA_Ecto-sp13_S_contig19567.6305.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19567.6305.1 vs. uniprot
Match: A0A6H5JKL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKL9_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 4.980e-42
Identity = 76/79 (96.20%), Postives = 77/79 (97.47%), Query Frame = 1 
Query:    1 IVEVGLSDVRQGGGGGLRVNAEVAFLACGRREVSLWVPYWVVNATSLPLTLQHYLHASRHSGGNAYDTSGGGNPLFWEG 237
            IVEVGLSDVRQGG GGLRVNAEVAFLACGRREVSLWVPYWVVNATSLPLTLQHYLHASR SGG+AYDTSGGGNPLFWEG
Sbjct: 3202 IVEVGLSDVRQGGEGGLRVNAEVAFLACGRREVSLWVPYWVVNATSLPLTLQHYLHASRLSGGHAYDTSGGGNPLFWEG 3280
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19567.6305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JKL9_9PHAE4.980e-4296.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19567contigEcto-sp13_S_contig19567:1731..2363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size271
Hectar predicted targeting categoryother localisation
Exons2
Cds size270
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462991.0956414-CDS-Ecto-sp13_S_contig19567:1730..18261681462991.0956414-CDS-Ecto-sp13_S_contig19567:1730..1826Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19567 1731..1826 +
1681462991.1070564-CDS-Ecto-sp13_S_contig19567:2189..23631681462991.1070564-CDS-Ecto-sp13_S_contig19567:2189..2363Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19567 2190..2363 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19567.6305.1prot_Ecto-sp13_S_contig19567.6305.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19567 1731..2363 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19567.6305.1

>prot_Ecto-sp13_S_contig19567.6305.1 ID=prot_Ecto-sp13_S_contig19567.6305.1|Name=mRNA_Ecto-sp13_S_contig19567.6305.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=90bp
IVEVGLSDVRQGGGGGLRVNAEVAFLACGRREVSLWVPYWVVNATSLPLT
LQHYLHASRHSGGNAYDTSGGGNPLFWEGGGAAAGLGEDA
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mRNA from alignment at Ecto-sp13_S_contig19567:1731..2363+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19567.6305.1 ID=mRNA_Ecto-sp13_S_contig19567.6305.1|Name=mRNA_Ecto-sp13_S_contig19567.6305.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=633bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19567:1731..2363+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCGTCGAAGTGGGGCTCAGCGATGTGCGCCAAGGGGGGGGGGGGGGGCT
TCGGGTGAATGCTGAGGTGGCGTTTCTGGCGTGCGGGCGTCGGGAGGTGC
GATGGGTGATGAAAGTAACATTTTCTTAGAAGGGGTATGGGTAAGAGGAG
GGCGACTGGCCTTTTACAGGAGACCGTGTACCAAGCGGCCGGTTGGTTTG
GCTGGCTCGTACGCGGAGCAGTGTCTGGCTACGGTAGAACGGAAGCAACG
GGCCTTGCGATATACCAGTAGTCGGTTCCGCCTCACTCGTTGGCTTGCCG
CCAAGCCTCATCTATCCCTGGAAGTTTCCCGGTCGTTTTCGATCACCCCC
CACTCCACCCAGACTCGATACGGCACCCCCCCCCCCCCACCTCCCTCAAC
TAGTTCGTTTGTGCCGCTTGCTGCGTCTACCGGTGCTGCCTGCTGCTGCT
TTGGCAAAGGTGTCGCTGTGGGTGCCGTACTGGGTCGTGAACGCCACCTC
GCTGCCGCTCACGCTCCAGCACTACCTGCACGCTTCGAGGCATAGCGGCG
GCAACGCCTACGACACTTCGGGCGGGGGAAACCCCCTTTTCTGGGAAGGC
GGCGGCGCGGCAGCCGGCCTAGGTGAGGACGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19567:1731..2363+

>mRNA_Ecto-sp13_S_contig19567.6305.1 ID=mRNA_Ecto-sp13_S_contig19567.6305.1|Name=mRNA_Ecto-sp13_S_contig19567.6305.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19567:1731..2363+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCGTCGAAGTGGGGCTCAGCGATGTGCGCCAAGGGGGGGGGGGGGGGCT
TCGGGTGAATGCTGAGGTGGCGTTTCTGGCGTGCGGGCGTCGGGAGGTGT
CGCTGTGGGTGCCGTACTGGGTCGTGAACGCCACCTCGCTGCCGCTCACG
CTCCAGCACTACCTGCACGCTTCGAGGCATAGCGGCGGCAACGCCTACGA
CACTTCGGGCGGGGGAAACCCCCTTTTCTGGGAAGGCGGCGGCGCGGCAG
CCGGCCTAGGTGAGGACGCC
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