mRNA_Ecto-sp13_S_contig19540.6295.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19540.6295.1
Unique NamemRNA_Ecto-sp13_S_contig19540.6295.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19540.6295.1 vs. uniprot
Match: D7G0A9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A9_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 1.760e-54
Identity = 109/131 (83.21%), Postives = 116/131 (88.55%), Query Frame = 2 
Query:  350 LEKSVVPSRVSRNERGGGCRPPGAEAKQAMQSRGQTTRGACQPEAQDVARRTRRRALPGGGEKRTAVEAGDQRRYRPDVGARRSDTARAAARRRPAPAIARHSLRNAFLVLFAAMLAAPRISNTSSSTARL 742
            LEKSVVPS VSRNERG GCRPPGAEA+QAM+SRGQT + ACQ EA+DVARR RRRALP GGEKRTA+EA DQRR+RPDV A RSDTA A ARRR APAIARHSLRNAFLVLFAAMLA PRI+N SSSTARL
Sbjct:   60 LEKSVVPSTVSRNERGEGCRPPGAEAEQAMRSRGQTNQRACQQEAKDVARRRRRRALPTGGEKRTALEARDQRRFRPDVAAGRSDTASATARRRSAPAIARHSLRNAFLVLFAAMLATPRINNPSSSTARL 190
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19540.6295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0A9_ECTSI1.760e-5483.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19540contigEcto-sp13_S_contig19540:325..3284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size742
Hectar predicted targeting categoryother localisation
Exons2
Cds size399
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462990.4462836-UTR-Ecto-sp13_S_contig19540:324..6671681462990.4462836-UTR-Ecto-sp13_S_contig19540:324..667Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19540 325..667 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462990.4549417-CDS-Ecto-sp13_S_contig19540:667..6691681462990.4549417-CDS-Ecto-sp13_S_contig19540:667..669Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19540 668..669 +
1681462990.4628782-CDS-Ecto-sp13_S_contig19540:2887..32841681462990.4628782-CDS-Ecto-sp13_S_contig19540:2887..3284Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19540 2888..3284 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19540.6295.1prot_Ecto-sp13_S_contig19540.6295.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19540 668..3284 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19540.6295.1

>prot_Ecto-sp13_S_contig19540.6295.1 ID=prot_Ecto-sp13_S_contig19540.6295.1|Name=mRNA_Ecto-sp13_S_contig19540.6295.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=133bp
MLLEKSVVPSRVSRNERGGGCRPPGAEAKQAMQSRGQTTRGACQPEAQDV
ARRTRRRALPGGGEKRTAVEAGDQRRYRPDVGARRSDTARAAARRRPAPA
IARHSLRNAFLVLFAAMLAAPRISNTSSSTARL
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mRNA from alignment at Ecto-sp13_S_contig19540:325..3284+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19540.6295.1 ID=mRNA_Ecto-sp13_S_contig19540.6295.1|Name=mRNA_Ecto-sp13_S_contig19540.6295.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2960bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19540:325..3284+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCCGCTGGTGCTCTGCCGCGTACCACAAACGCACACAACACGCCTCACT
CTGGTTGCTGCTGCTGCTGTGAACGCAACGAAACAGCAGAGAAAGAGAGA
AAGGTGGTGTGTGTCCAGGCACACAGAGCAGTGTTTTGGGGAGAGGGAGT
CGGGCTAGCCGCTCGCCGTCAAGGAGCTTTTTTGCTCGTCACCCATCACC
GATCACGGCTTCCTGGACAAAAGAATTGAGCCGCACAACAAGCAGCAGGC
CGTTTCCTCCATACGGAAGAAGCCAGCCACGAGGGTTCGCGCTCCCACAT
CGAGGACGCCAAGAGAGAGGGAGCTCGACAGGTCGAGGAACAGATGTGAG
TGTGTGCGGCCAGCCTGTGTTCGGAATCGCGTGGTCTTGTGTACGCATGG
CCGGCATCACCCAAAAAAGCAGCGAAGGCGTGCAAGCTGCAGGGTTGGTA
GTGAAAACGGAAAAAGTTTTCTCATGCATACCTTAAACAACAACCGACTA
TATTGACAATTTTTGGTGGTCAAGCCCTGTGGGGTCATGCAGCCCCAGCT
GCGTCAGGTCGCATGTGGTGTGCTCCGGTCCTCCTCGTCCTGCAAGCTTG
CCTACTAGCACCTCGCGCCGCATCGCATCTTTCGCTGTTGGTTGTTGTCG
GGATTGTGCGTGTTCATTTTTTTCCGCTCAAATCTGAACGAACGAACCCA
TGGGCGTGCACTCTGCTATGGCCGTCGCTACTGCTTTTTCGAGTACCTTG
CACCCAGCACTGCCTCTAAAAAACATATCGTGCATGCGACTACATCCAGA
GGCGAGAAGAACAGCTCTGCAATCATCACCACGGCCCGCGTAATCGCTCT
CATTCACCCGAGAGTTCCATTCTGGGCACAGCCCAGCACCTTGGAATCGA
GCGGGACAATCGCATCTGTTTTGTTGCCCCAGACCAGCAGTCGTCACCAA
CCACAGCAGCAACAGCAGCAGCAGCAAGTTTCGGGCTGCACACACAGCAG
TGTCGTCTCATCCTACAAGTTGTACGATATGAAGGAGGGGACGAGCGCCT
GATGCGGCCAGGTGCCGACGGTACCAAAAGTAAGAGCTGGATCAGGCCCC
TCTTATATATCGCTTCCTAGATATATCTCTTGGTGTTGTTGCCGTACATC
CATCTCTTCGGTACATGTATTGCCGGATGTGCGTCATGCCAACGCAACCA
TGGGAACCAAAAAAGTTAAATGACCCGCTTGCTCATGCACACAATCTCCT
TTCCCTGTGACCGAACTGACCGAAAAATTGCCGAAAAAGAAAGGCCCGAA
CTCGGAGCCTTGTGCCCTCTACGCAAGTGTTAAAGGTGGAGAAATGTGCG
CGTTCGTCTGTGCACGTTCTCGTCTCCGCAAATCATTGGGGCCGTTCCTT
TCTTCGGAAATTCAAGTTTAAATGCGATGTGCCCATACTCCCAGTATGTA
ACGTGTTCGTTCGGAGTGCAACCAAATTGATTACCCCGAAATATTGGTGT
GGATACAATGTGCGACATGCAAACTATTTAAGTGGGTGCGTGCATTGCAA
TGTTGTATACGGCGGATAGATGGAGCAACAAATGGATGTAGTGGTGCGTT
CGTGTGCAATGGCCCGACGCACCAACACAAAAGTGCTGGCGGTGCCCGCA
TTGACCGCATACTTGTGTATGATGGCAAGGATCAATGTCATTAAAAGAAT
CCGAGAGTGAGTCAGTCCCCTCGTTCCCGTGCGCATCGGCCTACAGTGTA
GTTAGTGACTTGGTCCATACGCGCGAATCTCCACCGATGATATCATAGCG
ACAGGACAACTGACATTTGTTCCTGCCTCGCGCGTGGATTCGCTGGAAGG
TTTGGCGTCTCATGCCCTGTAGCGTGATGCCTGTCGTCGGGATTTATATC
CTGCCGCAGTTCGTTTGGAGAGCAGGAAACGTACCTGCGATTGTTGTTTG
CGGCGCCGAGGGTGTGCGAACCTGCGAAATACCGTCGTGGGTGACACAAG
GCATCACACCCACTGGACTGATTTTCGAAGACCGCTTTACCCCATACCAA
AAAGAGGTGCGGAAAAAACCGCGTTTGCGGGGCGTTTCGTTGAGAGCTTG
CCGAAACGAATCGTTTGATGTGTTAATCCTCTTCGTAATCGAGCTTTGAA
AATCTGTGCGGGCGGGGTGCTGTCTTACGTCACCTGCGGTAACACCACCT
GCAATATATGCCCCGCACCGTTAAATCTCTCTCTCTCTACTCCCCCTCGC
AGCGCAGCCGATGCATGCCTTGATATCGGCTTTGGTATCATTTCAGTCAA
GTCGATATTCCCTCTCCCTCACCCTTCCCTCCGTCTTTCTAACCCCCCCC
CCCCCTCCCCCCCCCCCTCCTTTAAATTCCCCCCCCCCCCCCCCCCCCCC
CCCCTCCCCCCCCCCCCCCCCCCGCCTCCCCACCCCCCCCATCCNNNNNN
NNNNGAACTTGCCGCCCCGCCCGCCTCCCTCCACTTACTGCCCCCCCCCC
CCCGCGCTTATCTGCACGCCATCCCGGCTGCCTGCGTTTTGCGGTCTTGT
TGAAATTCCACAGGCTACTTGAGAAAAGTGTGGTCCCTTCGAGGGTTTCC
AGAAACGAACGCGGAGGAGGTTGCCGGCCTCCAGGGGCGGAAGCAAAACA
AGCGATGCAAAGCAGGGGACAGACGACCCGGGGTGCCTGCCAGCCGGAGG
CACAAGACGTTGCGCGGAGGACGAGGAGGAGAGCACTCCCGGGGGGGGGC
GAGAAACGAACGGCTGTGGAAGCTGGAGATCAACGGCGATACCGACCCGA
CGTCGGCGCCCGTAGGAGCGACACCGCGAGGGCCGCGGCGAGGCGGCGGC
CTGCCCCTGCGATCGCCCGCCACTCCCTGAGAAATGCCTTCTTGGTTCTC
TTTGCCGCCATGCTCGCGGCACCGCGGATCAGCAACACGTCGAGCTCGAC
CGCGCGCTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19540:325..3284+

>mRNA_Ecto-sp13_S_contig19540.6295.1 ID=mRNA_Ecto-sp13_S_contig19540.6295.1|Name=mRNA_Ecto-sp13_S_contig19540.6295.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=399bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19540:325..3284+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTACTTGAGAAAAGTGTGGTCCCTTCGAGGGTTTCCAGAAACGAACG
CGGAGGAGGTTGCCGGCCTCCAGGGGCGGAAGCAAAACAAGCGATGCAAA
GCAGGGGACAGACGACCCGGGGTGCCTGCCAGCCGGAGGCACAAGACGTT
GCGCGGAGGACGAGGAGGAGAGCACTCCCGGGGGGGGGCGAGAAACGAAC
GGCTGTGGAAGCTGGAGATCAACGGCGATACCGACCCGACGTCGGCGCCC
GTAGGAGCGACACCGCGAGGGCCGCGGCGAGGCGGCGGCCTGCCCCTGCG
ATCGCCCGCCACTCCCTGAGAAATGCCTTCTTGGTTCTCTTTGCCGCCAT
GCTCGCGGCACCGCGGATCAGCAACACGTCGAGCTCGACCGCGCGCTTG
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