prot_Ecto-sp13_S_contig19540.6295.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig19540.6295.1
Unique Nameprot_Ecto-sp13_S_contig19540.6295.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length133
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19540.6295.1 vs. uniprot
Match: D7G0A9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A9_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 3.630e-56
Identity = 109/131 (83.21%), Postives = 116/131 (88.55%), Query Frame = 0 
Query:    3 LEKSVVPSRVSRNERGGGCRPPGAEAKQAMQSRGQTTRGACQPEAQDVARRTRRRALPGGGEKRTAVEAGDQRRYRPDVGARRSDTARAAARRRPAPAIARHSLRNAFLVLFAAMLAAPRISNTSSSTARL 133
            LEKSVVPS VSRNERG GCRPPGAEA+QAM+SRGQT + ACQ EA+DVARR RRRALP GGEKRTA+EA DQRR+RPDV A RSDTA A ARRR APAIARHSLRNAFLVLFAAMLA PRI+N SSSTARL
Sbjct:   60 LEKSVVPSTVSRNERGEGCRPPGAEAEQAMRSRGQTNQRACQQEAKDVARRRRRRALPTGGEKRTALEARDQRRFRPDVAAGRSDTASATARRRSAPAIARHSLRNAFLVLFAAMLATPRINNPSSSTARL 190
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19540.6295.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0A9_ECTSI3.630e-5683.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 105..123
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..104
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 124..133

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19540contigEcto-sp13_S_contig19540:668..3284 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19540.6295.1mRNA_Ecto-sp13_S_contig19540.6295.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig19540 325..3284 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig19540.6295.1 ID=prot_Ecto-sp13_S_contig19540.6295.1|Name=mRNA_Ecto-sp13_S_contig19540.6295.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=133bp
MLLEKSVVPSRVSRNERGGGCRPPGAEAKQAMQSRGQTTRGACQPEAQDV
ARRTRRRALPGGGEKRTAVEAGDQRRYRPDVGARRSDTARAAARRRPAPA
IARHSLRNAFLVLFAAMLAAPRISNTSSSTARL
back to top