mRNA_Ecto-sp13_S_contig19537.6292.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig19537.6292.1 vs. uniprot
Match: A0A6H5KWT8_9PHAE (Ribosomal_S7 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWT8_9PHAE) HSP 1 Score: 178 bits (451), Expect = 1.580e-51 Identity = 94/101 (93.07%), Postives = 97/101 (96.04%), Query Frame = 1
Query: 1 ILTRFSTSKVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKA 303
+LT + +VLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKA
Sbjct: 131 LLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKA 231
BLAST of mRNA_Ecto-sp13_S_contig19537.6292.1 vs. uniprot
Match: A0A812XN14_SYMMI (RPS5 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812XN14_SYMMI) HSP 1 Score: 175 bits (443), Expect = 5.100e-51 Identity = 90/101 (89.11%), Postives = 97/101 (96.04%), Query Frame = 1
Query: 1 ILTRFSTSKVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKA 303
ILT + +VLVDA+INSGPREDSTR+GSAGVVRRQAVD+SPFRRVNQA+YL+TTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKA
Sbjct: 79 ILTDQNPVQVLVDAIINSGPREDSTRIGSAGVVRRQAVDVSPFRRVNQAIYLMTTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKA 179
BLAST of mRNA_Ecto-sp13_S_contig19537.6292.1 vs. uniprot
Match: A0A2R6QRL5_ACTCC (40S ribosomal protein n=1 Tax=Actinidia chinensis var. chinensis TaxID=1590841 RepID=A0A2R6QRL5_ACTCC) HSP 1 Score: 169 bits (428), Expect = 1.230e-49 Identity = 84/101 (83.17%), Postives = 96/101 (95.05%), Query Frame = 1
Query: 1 ILTRFSTSKVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKA 303
+LT + +V+VDAVINSGPRED+TR+GSAGVVRRQAVD+SP RRVNQA+YL+TTGARES+FRNIKTIAECLADE+INAA+GSSNSYAIKKKDEIERVAKA
Sbjct: 15 LLTDLNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKA 115
BLAST of mRNA_Ecto-sp13_S_contig19537.6292.1 vs. uniprot
Match: A0A1Q3D0W5_CEPFO (Ribosomal_S7 domain-containing protein (Fragment) n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3D0W5_CEPFO) HSP 1 Score: 169 bits (429), Expect = 1.230e-49 Identity = 84/101 (83.17%), Postives = 96/101 (95.05%), Query Frame = 1
Query: 1 ILTRFSTSKVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKA 303
+LT + +V+VDAV+NSGPRED+TR+GSAGVVRRQAVD+SP RRVNQALYL+TTGARES+FRNIKTIAECLADE+INAA+GSSNSYAIKKKDEIERVAKA
Sbjct: 26 LLTDLNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQALYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKA 126
BLAST of mRNA_Ecto-sp13_S_contig19537.6292.1 vs. uniprot
Match: A0A7S0Q8A7_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q8A7_9EUKA) HSP 1 Score: 171 bits (433), Expect = 2.440e-49 Identity = 88/101 (87.13%), Postives = 95/101 (94.06%), Query Frame = 1
Query: 1 ILTRFSTSKVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKA 303
ILT + +V +DA+INSGPREDSTRVGSAGVVRRQAVD+SPFRRVNQA+YL+ TGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKA
Sbjct: 92 ILTDQNPVQVYIDAIINSGPREDSTRVGSAGVVRRQAVDVSPFRRVNQAIYLMATGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKA 192
BLAST of mRNA_Ecto-sp13_S_contig19537.6292.1 vs. uniprot
Match: A0A835ZGP4_9STRA (Ribosomal protein S7 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGP4_9STRA) HSP 1 Score: 171 bits (432), Expect = 3.340e-49 Identity = 88/101 (87.13%), Postives = 96/101 (95.05%), Query Frame = 1
Query: 1 ILTRFSTSKVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKA 303
+LT + + LV+AVIN+GPREDSTRVGSAGVVRRQAVDLSPFRRVNQA+YL+TTGARESSFRNIKTIAECLADEIINA+RGSSNSYAIKKKDEIERVAKA
Sbjct: 91 LLTDENPLQTLVNAVINAGPREDSTRVGSAGVVRRQAVDLSPFRRVNQAIYLLTTGARESSFRNIKTIAECLADEIINASRGSSNSYAIKKKDEIERVAKA 191
BLAST of mRNA_Ecto-sp13_S_contig19537.6292.1 vs. uniprot
Match: A0A7R9UBY1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UBY1_9STRA) HSP 1 Score: 170 bits (431), Expect = 4.860e-49 Identity = 86/93 (92.47%), Postives = 92/93 (98.92%), Query Frame = 1
Query: 25 KVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKA 303
+VLVDA+INSGPREDSTRVGSAGVVRRQAVD SPFRRVNQA+YL+TTGARE+SFRNIKTI+ECLADEIINAARGSSNSYAIKKKDEIERVAKA
Sbjct: 100 QVLVDAIINSGPREDSTRVGSAGVVRRQAVDCSPFRRVNQAIYLLTTGAREASFRNIKTISECLADEIINAARGSSNSYAIKKKDEIERVAKA 192
BLAST of mRNA_Ecto-sp13_S_contig19537.6292.1 vs. uniprot
Match: A0A0K9P735_ZOSMR (Ribosomal protein 5B n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9P735_ZOSMR) HSP 1 Score: 170 bits (431), Expect = 5.170e-49 Identity = 86/101 (85.15%), Postives = 96/101 (95.05%), Query Frame = 1
Query: 1 ILTRFSTSKVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKA 303
+LT + +V+VDAVINSGPRED+TR+GSAGVVRRQAVD+SP RRVNQALYLITTGARESSFRN+KTIAECLADE+INAA+GSSNSYAIKKKDEIERVAKA
Sbjct: 94 LLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQALYLITTGARESSFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKA 194
BLAST of mRNA_Ecto-sp13_S_contig19537.6292.1 vs. uniprot
Match: A0A2P5B7Z6_PARAD (Ribosomal protein n=4 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5B7Z6_PARAD) HSP 1 Score: 169 bits (427), Expect = 7.890e-49 Identity = 83/101 (82.18%), Postives = 96/101 (95.05%), Query Frame = 1
Query: 1 ILTRFSTSKVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKA 303
+LT + +V+VDAV+NSGPRED+TR+GSAGVVRRQAVD+SP RRVNQA+YL+TTGARES+FRNIKTIAECLADE+INAA+GSSNSYAIKKKDEIERVAKA
Sbjct: 63 LLTDLNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKA 163
BLAST of mRNA_Ecto-sp13_S_contig19537.6292.1 vs. uniprot
Match: A0A804UBJ8_MAIZE (Ribosomal_S7 domain-containing protein n=1 Tax=Zea mays TaxID=4577 RepID=A0A804UBJ8_MAIZE) HSP 1 Score: 167 bits (422), Expect = 9.830e-49 Identity = 82/97 (84.54%), Postives = 93/97 (95.88%), Query Frame = 1
Query: 13 FSTSKVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKA 303
F +V+VDA+INSGPRED+TR+GSAGVVRRQAVD+SP RRVNQA+YL+TTGARES+FRNIKTIAECLADE+INAA+GSSNSYAIKKKDEIERVAKA
Sbjct: 19 FDDVQVVVDAIINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKA 115 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19537.6292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig19537.6292.1 >prot_Ecto-sp13_S_contig19537.6292.1 ID=prot_Ecto-sp13_S_contig19537.6292.1|Name=mRNA_Ecto-sp13_S_contig19537.6292.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=105bp ILTRFSTSKVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALback to top mRNA from alignment at Ecto-sp13_S_contig19537:451..1949+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig19537.6292.1 ID=mRNA_Ecto-sp13_S_contig19537.6292.1|Name=mRNA_Ecto-sp13_S_contig19537.6292.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1499bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19537:451..1949+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19537:451..1949+ >mRNA_Ecto-sp13_S_contig19537.6292.1 ID=mRNA_Ecto-sp13_S_contig19537.6292.1|Name=mRNA_Ecto-sp13_S_contig19537.6292.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19537:451..1949+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |