prot_Ecto-sp13_S_contig19533.6291.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig19533.6291.1
Unique Name	prot_Ecto-sp13_S_contig19533.6291.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	87

Homology

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BLAST of mRNA_Ecto-sp13_S_contig19533.6291.1 vs. uniprot
Match: D8LBR5_ECTSI (Vesicle coat complex COPII, subunit SEC31 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR5_ECTSI)

HSP 1 Score: 193 bits (490), Expect = 1.750e-55
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0

Query:    1 MATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTASGDDNNPVLKLWDLRSSTTLPLATLSGHSEGVLSVAWCP 87
            MATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTASGDDNNPVLKLWDLRSSTTLPLATLSGHSEGVLSVAWCP
Sbjct:  189 MATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTASGDDNNPVLKLWDLRSSTTLPLATLSGHSEGVLSVAWCP 275

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BLAST of mRNA_Ecto-sp13_S_contig19533.6291.1 vs. uniprot
Match: A0A6H5KCD9_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCD9_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 2.650e-55
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0

Query:    1 MATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTASGDDNNPVLKLWDLRSSTTLPLATLSGHSEGVLSVAWCP 87
            MATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTASGDDNNPVLKLWDLRSSTTLPLATLSGHSEGVLSVAWCP
Sbjct:  204 MATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTASGDDNNPVLKLWDLRSSTTLPLATLSGHSEGVLSVAWCP 290

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BLAST of mRNA_Ecto-sp13_S_contig19533.6291.1 vs. uniprot
Match: A0A7S2XZL8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZL8_9STRA)

HSP 1 Score: 164 bits (416), Expect = 2.970e-46
Identity = 69/87 (79.31%), Postives = 79/87 (90.80%), Query Frame = 0

Query:    1 MATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTASGDDNNPVLKLWDLRSSTTLPLATLSGHSEGVLSVAWCP 87
            +AT+AQNG+CIVWDL+QKKPWCELRD  RAPI D+ WNP QG H++TASGDDNNPVLKLWDLRSSTTLPLATL GH++G+LS AWCP
Sbjct:  194 LATSAQNGTCIVWDLRQKKPWCELRDAARAPIPDMCWNPTQGLHIITASGDDNNPVLKLWDLRSSTTLPLATLQGHTQGILSCAWCP 280

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BLAST of mRNA_Ecto-sp13_S_contig19533.6291.1 vs. uniprot
Match: A0A482RVV6_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RVV6_9ARCH)

HSP 1 Score: 152 bits (384), Expect = 4.670e-43
Identity = 63/87 (72.41%), Postives = 76/87 (87.36%), Query Frame = 0

Query:    1 MATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTASGDDNNPVLKLWDLRSSTTLPLATLSGHSEGVLSVAWCP 87
            +A+AAQNGS  +WDL+QK+ WCELRDP    + D+AWNPDQG H+VTASGDD +PV+KLWDLRSST+LPLATL GH+EGVLSV+WCP
Sbjct:  115 LASAAQNGSTYIWDLRQKRAWCELRDPANGVVADIAWNPDQGLHIVTASGDDRHPVIKLWDLRSSTSLPLATLQGHTEGVLSVSWCP 201

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BLAST of mRNA_Ecto-sp13_S_contig19533.6291.1 vs. uniprot
Match: A0A7S3Y0U1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y0U1_HETAK)

HSP 1 Score: 151 bits (381), Expect = 1.170e-42
Identity = 63/86 (73.26%), Postives = 74/86 (86.05%), Query Frame = 0

Query:    1 MATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTASGDDNNPVLKLWDLRSSTTLPLATLSGHSEGVLSVAWC 86
            +ATA QNGSCIVWDL+QKKPWCEL+D  R  I DVAWNPDQG H+VTASGDDNNPV+ LWDLR + T+P ATL GH++G+LS+AWC
Sbjct:  181 LATAGQNGSCIVWDLRQKKPWCELKDTIRGRIADVAWNPDQGLHIVTASGDDNNPVINLWDLRGNYTVPSATLRGHTQGILSLAWC 266

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BLAST of mRNA_Ecto-sp13_S_contig19533.6291.1 vs. uniprot
Match: A0A4D9D4C1_9STRA (WW domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D4C1_9STRA)

HSP 1 Score: 152 bits (385), Expect = 3.790e-41
Identity = 62/87 (71.26%), Postives = 77/87 (88.51%), Query Frame = 0

Query:    1 MATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTASGDDNNPVLKLWDLRSSTTLPLATLSGHSEGVLSVAWCP 87
            +A+ + NGS IVWDL+QKKP+CELRDP R P+ D+AWNPD+G H+VTASGDDNNPV++LWDLRSSTT P+ATL GH +G+LSV+WCP
Sbjct:  193 LASCSGNGSTIVWDLRQKKPYCELRDPARGPVADIAWNPDEGLHMVTASGDDNNPVIRLWDLRSSTTHPMATLKGHDQGLLSVSWCP 279

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BLAST of mRNA_Ecto-sp13_S_contig19533.6291.1 vs. uniprot
Match: A0A7S2GC77_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GC77_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.790e-40
Identity = 62/86 (72.09%), Postives = 77/86 (89.53%), Query Frame = 0

Query:    1 MATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTASGDDNNPVLKLWDLRSSTTLPLATLSGHSEGVLSVAWC 86
            +A+A+QNGSC+VWDL+ KKPWCELRDP RA I D+AWNP +G H++TA GDD NPV+K+WDLRSSTTLPLATL GH++G+LSV+WC
Sbjct:  216 LASASQNGSCMVWDLRSKKPWCELRDPARACIADIAWNPVEGLHMMTAIGDDANPVIKMWDLRSSTTLPLATLQGHTQGLLSVSWC 301

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BLAST of mRNA_Ecto-sp13_S_contig19533.6291.1 vs. uniprot
Match: A0A7S2R415_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R415_9STRA)

HSP 1 Score: 148 bits (374), Expect = 2.500e-40
Identity = 63/87 (72.41%), Postives = 74/87 (85.06%), Query Frame = 0

Query:    1 MATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTASGDDNNPVLKLWDLRSSTTLPLATLSGHSEGVLSVAWCP 87
            +A+A+ NGSCIVWDL+QKK WCELRD NR+ I DVAWNP +G  + T  GDD NPV+KLWDLRSSTTLPLATL GHS+GVLS++WCP
Sbjct:  194 LASASLNGSCIVWDLRQKKAWCELRDQNRSAIADVAWNPIEGLQIATGLGDDQNPVIKLWDLRSSTTLPLATLKGHSQGVLSMSWCP 280

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BLAST of mRNA_Ecto-sp13_S_contig19533.6291.1 vs. uniprot
Match: F0YCL1_AURAN (Sec16_C domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCL1_AURAN)

HSP 1 Score: 149 bits (375), Expect = 5.840e-40
Identity = 63/88 (71.59%), Postives = 78/88 (88.64%), Query Frame = 0

Query:    1 MATAAQNGSCIVWDLKQKKPWCELRDPN-RAPITDVAWNPDQGQHLVTASGDDNNPVLKLWDLRSSTTLPLATLSGHSEGVLSVAWCP 87
            +ATA+QNGS IVWDL+QKKPWCELRD + R+P++ VAWNP +G HL TASGDD NPV+KLWDLRSSTT+PL TL GH++G+LS++WCP
Sbjct:  197 LATASQNGSTIVWDLRQKKPWCELRDASFRSPVSAVAWNPAEGLHLATASGDDANPVIKLWDLRSSTTMPLGTLKGHTQGILSLSWCP 284

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BLAST of mRNA_Ecto-sp13_S_contig19533.6291.1 vs. uniprot
Match: A0A7S4EAB3_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EAB3_9STRA)

HSP 1 Score: 146 bits (369), Expect = 5.420e-39
Identity = 61/88 (69.32%), Postives = 78/88 (88.64%), Query Frame = 0

Query:    1 MATAAQNGSCIVWDLKQKKPWCELRDP-NRAPITDVAWNPDQGQHLVTASGDDNNPVLKLWDLRSSTTLPLATLSGHSEGVLSVAWCP 87
            +ATA+Q+G+ IVWDL+QKKPWCELRD  +R+P++DVAWNP +G HL TASGDD NPV++LWDLRSSTT+PL TL GH++G+LS+ WCP
Sbjct:  193 LATASQSGATIVWDLRQKKPWCELRDAASRSPVSDVAWNPLEGLHLATASGDDGNPVVRLWDLRSSTTMPLGTLRGHTQGILSIDWCP 280

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig19533.6291.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig19533.6291.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LBR5_ECTSI	1.750e-55	100.00	Vesicle coat complex COPII, subunit SEC31 n=1 Tax=...	[more]
A0A6H5KCD9_9PHAE	2.650e-55	100.00	WW domain-containing protein n=1 Tax=Ectocarpus sp...	[more]
A0A7S2XZL8_9STRA	2.970e-46	79.31	Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa...	[more]
A0A482RVV6_9ARCH	4.670e-43	72.41	Uncharacterized protein (Fragment) n=1 Tax=archaeo...	[more]
A0A7S3Y0U1_HETAK	1.170e-42	73.26	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
A0A4D9D4C1_9STRA	3.790e-41	71.26	WW domain-containing protein n=2 Tax=Monodopsidace...	[more]
A0A7S2GC77_9STRA	1.790e-40	72.09	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
A0A7S2R415_9STRA	2.500e-40	72.41	Hypothetical protein (Fragment) n=1 Tax=Rhizochrom...	[more]
F0YCL1_AURAN	5.840e-40	71.59	Sec16_C domain-containing protein (Fragment) n=1 T...	[more]
A0A7S4EAB3_9STRA	5.420e-39	69.32	Hypothetical protein n=2 Tax=Pelagomonas calceolat...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 17..61 e-value: 4.2E-4 score: 29.6
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 31..61 e-value: 0.032 score: 15.1
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 1..87 e-value: 1.4E-27 score: 98.7
IPR040251	Protein transport protein SEC31-like	PANTHER	PTHR13923	SEC31-RELATED PROTEIN	coord: 2..87
None	No IPR available	PANTHER	PTHR13923:SF11	SEC31 ORTHOLOG, ISOFORM D	coord: 2..87
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 1..15
IPR017986	WD40-repeat-containing domain	PROSITE	PS50294	WD_REPEATS_REGION	coord: 1..87 score: 12.763
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 2..87

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig19533	contig	Ecto-sp13_S_contig19533:2464..3204 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig19533.6291.1	mRNA_Ecto-sp13_S_contig19533.6291.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig19533 2464..3219 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig19533.6291.1 ID=prot_Ecto-sp13_S_contig19533.6291.1|Name=mRNA_Ecto-sp13_S_contig19533.6291.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=87bp
MATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTASG
DDNNPVLKLWDLRSSTTLPLATLSGHSEGVLSVAWCP

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_repeat
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR040251	SEC31-like
IPR019775	WD40_repeat_CS
IPR017986	WD40_repeat_dom
IPR036322	WD40_repeat_dom_sf