mRNA_Ecto-sp13_S_contig19533.6291.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19533.6291.1
Unique NamemRNA_Ecto-sp13_S_contig19533.6291.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19533.6291.1 vs. uniprot
Match: D8LBR5_ECTSI (Vesicle coat complex COPII, subunit SEC31 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR5_ECTSI)

HSP 1 Score: 200 bits (508), Expect = 6.990e-58
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1 
Query:    4 VSHIMATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTASGDDNNPVLKLWDLRSSTTLPLATLSGHSEGVLSVAWCP 276
            VSHIMATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTASGDDNNPVLKLWDLRSSTTLPLATLSGHSEGVLSVAWCP
Sbjct:  185 VSHIMATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTASGDDNNPVLKLWDLRSSTTLPLATLSGHSEGVLSVAWCP 275
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BLAST of mRNA_Ecto-sp13_S_contig19533.6291.1 vs. uniprot
Match: A0A6H5KCD9_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCD9_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 1.220e-57
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 1 
Query:    1 QVSHIMATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTASGDDNNPVLKLWDLRSSTTLPLATLSGHSEGVLSVAWCP 276
            QV HIMATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTASGDDNNPVLKLWDLRSSTTLPLATLSGHSEGVLSVAWCP
Sbjct:  199 QVCHIMATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTASGDDNNPVLKLWDLRSSTTLPLATLSGHSEGVLSVAWCP 290
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BLAST of mRNA_Ecto-sp13_S_contig19533.6291.1 vs. uniprot
Match: A0A7S2XZL8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZL8_9STRA)

HSP 1 Score: 172 bits (436), Expect = 4.710e-49
Identity = 73/92 (79.35%), Postives = 84/92 (91.30%), Query Frame = 1 
Query:    1 QVSHIMATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTASGDDNNPVLKLWDLRSSTTLPLATLSGHSEGVLSVAWCP 276
            QV+HI+AT+AQNG+CIVWDL+QKKPWCELRD  RAPI D+ WNP QG H++TASGDDNNPVLKLWDLRSSTTLPLATL GH++G+LS AWCP
Sbjct:  189 QVAHILATSAQNGTCIVWDLRQKKPWCELRDAARAPIPDMCWNPTQGLHIITASGDDNNPVLKLWDLRSSTTLPLATLQGHTQGILSCAWCP 280
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BLAST of mRNA_Ecto-sp13_S_contig19533.6291.1 vs. uniprot
Match: A0A7S3Y0U1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y0U1_HETAK)

HSP 1 Score: 159 bits (401), Expect = 1.530e-45
Identity = 67/91 (73.63%), Postives = 79/91 (86.81%), Query Frame = 1 
Query:    1 QVSHIMATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTASGDDNNPVLKLWDLRSSTTLPLATLSGHSEGVLSVAWC 273
            QV+HI+ATA QNGSCIVWDL+QKKPWCEL+D  R  I DVAWNPDQG H+VTASGDDNNPV+ LWDLR + T+P ATL GH++G+LS+AWC
Sbjct:  176 QVAHILATAGQNGSCIVWDLRQKKPWCELKDTIRGRIADVAWNPDQGLHIVTASGDDNNPVINLWDLRGNYTVPSATLRGHTQGILSLAWC 266
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BLAST of mRNA_Ecto-sp13_S_contig19533.6291.1 vs. uniprot
Match: A0A482RVV6_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RVV6_9ARCH)

HSP 1 Score: 159 bits (401), Expect = 1.700e-45
Identity = 67/92 (72.83%), Postives = 80/92 (86.96%), Query Frame = 1 
Query:    1 QVSHIMATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTASGDDNNPVLKLWDLRSSTTLPLATLSGHSEGVLSVAWCP 276
            QV HI+A+AAQNGS  +WDL+QK+ WCELRDP    + D+AWNPDQG H+VTASGDD +PV+KLWDLRSST+LPLATL GH+EGVLSV+WCP
Sbjct:  110 QVVHILASAAQNGSTYIWDLRQKRAWCELRDPANGVVADIAWNPDQGLHIVTASGDDRHPVIKLWDLRSSTSLPLATLQGHTEGVLSVSWCP 201
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BLAST of mRNA_Ecto-sp13_S_contig19533.6291.1 vs. uniprot
Match: A0A4D9D4C1_9STRA (WW domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D4C1_9STRA)

HSP 1 Score: 159 bits (403), Expect = 1.750e-43
Identity = 66/92 (71.74%), Postives = 81/92 (88.04%), Query Frame = 1 
Query:    1 QVSHIMATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTASGDDNNPVLKLWDLRSSTTLPLATLSGHSEGVLSVAWCP 276
            QV HI+A+ + NGS IVWDL+QKKP+CELRDP R P+ D+AWNPD+G H+VTASGDDNNPV++LWDLRSSTT P+ATL GH +G+LSV+WCP
Sbjct:  188 QVPHILASCSGNGSTIVWDLRQKKPYCELRDPARGPVADIAWNPDEGLHMVTASGDDNNPVIRLWDLRSSTTHPMATLKGHDQGLLSVSWCP 279
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BLAST of mRNA_Ecto-sp13_S_contig19533.6291.1 vs. uniprot
Match: F0YCL1_AURAN (Sec16_C domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCL1_AURAN)

HSP 1 Score: 157 bits (398), Expect = 4.600e-43
Identity = 68/93 (73.12%), Postives = 83/93 (89.25%), Query Frame = 1 
Query:    1 QVSHIMATAAQNGSCIVWDLKQKKPWCELRDPN-RAPITDVAWNPDQGQHLVTASGDDNNPVLKLWDLRSSTTLPLATLSGHSEGVLSVAWCP 276
            QVSHI+ATA+QNGS IVWDL+QKKPWCELRD + R+P++ VAWNP +G HL TASGDD NPV+KLWDLRSSTT+PL TL GH++G+LS++WCP
Sbjct:  192 QVSHILATASQNGSTIVWDLRQKKPWCELRDASFRSPVSAVAWNPAEGLHLATASGDDANPVIKLWDLRSSTTMPLGTLKGHTQGILSLSWCP 284
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BLAST of mRNA_Ecto-sp13_S_contig19533.6291.1 vs. uniprot
Match: A0A7S2R415_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R415_9STRA)

HSP 1 Score: 155 bits (392), Expect = 8.050e-43
Identity = 67/92 (72.83%), Postives = 78/92 (84.78%), Query Frame = 1 
Query:    1 QVSHIMATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTASGDDNNPVLKLWDLRSSTTLPLATLSGHSEGVLSVAWCP 276
            QV HI+A+A+ NGSCIVWDL+QKK WCELRD NR+ I DVAWNP +G  + T  GDD NPV+KLWDLRSSTTLPLATL GHS+GVLS++WCP
Sbjct:  189 QVPHILASASLNGSCIVWDLRQKKAWCELRDQNRSAIADVAWNPIEGLQIATGLGDDQNPVIKLWDLRSSTTLPLATLKGHSQGVLSMSWCP 280
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BLAST of mRNA_Ecto-sp13_S_contig19533.6291.1 vs. uniprot
Match: A0A7S2GC77_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GC77_9STRA)

HSP 1 Score: 156 bits (395), Expect = 2.090e-42
Identity = 65/90 (72.22%), Postives = 81/90 (90.00%), Query Frame = 1 
Query:    4 VSHIMATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTASGDDNNPVLKLWDLRSSTTLPLATLSGHSEGVLSVAWC 273
            V+HI+A+A+QNGSC+VWDL+ KKPWCELRDP RA I D+AWNP +G H++TA GDD NPV+K+WDLRSSTTLPLATL GH++G+LSV+WC
Sbjct:  212 VAHILASASQNGSCMVWDLRSKKPWCELRDPARACIADIAWNPVEGLHMMTAIGDDANPVIKMWDLRSSTTLPLATLQGHTQGLLSVSWC 301
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BLAST of mRNA_Ecto-sp13_S_contig19533.6291.1 vs. uniprot
Match: A0A7S4EAB3_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EAB3_9STRA)

HSP 1 Score: 155 bits (392), Expect = 5.250e-42
Identity = 66/93 (70.97%), Postives = 83/93 (89.25%), Query Frame = 1 
Query:    1 QVSHIMATAAQNGSCIVWDLKQKKPWCELRDP-NRAPITDVAWNPDQGQHLVTASGDDNNPVLKLWDLRSSTTLPLATLSGHSEGVLSVAWCP 276
            QVSHI+ATA+Q+G+ IVWDL+QKKPWCELRD  +R+P++DVAWNP +G HL TASGDD NPV++LWDLRSSTT+PL TL GH++G+LS+ WCP
Sbjct:  188 QVSHILATASQSGATIVWDLRQKKPWCELRDAASRSPVSDVAWNPLEGLHLATASGDDGNPVVRLWDLRSSTTMPLGTLRGHTQGILSIDWCP 280
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19533.6291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBR5_ECTSI6.990e-58100.00Vesicle coat complex COPII, subunit SEC31 n=1 Tax=... [more]
A0A6H5KCD9_9PHAE1.220e-5798.91WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A7S2XZL8_9STRA4.710e-4979.35Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3Y0U1_HETAK1.530e-4573.63Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A482RVV6_9ARCH1.700e-4572.83Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A4D9D4C1_9STRA1.750e-4371.74WW domain-containing protein n=2 Tax=Monodopsidace... [more]
F0YCL1_AURAN4.600e-4373.12Sec16_C domain-containing protein (Fragment) n=1 T... [more]
A0A7S2R415_9STRA8.050e-4372.83Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2GC77_9STRA2.090e-4272.22Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S4EAB3_9STRA5.250e-4270.97Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19533contigEcto-sp13_S_contig19533:2464..3219 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score193.0
Seed ortholog evalue5.9e-47
Seed eggNOG ortholog2880.D8LBR5
Model size276
KEGG koko:K14005
KEGG Pathwayko04141,map04141
KEGG ModuleM00404
Hectar predicted targeting categoryother localisation
GOsGO:0006810,GO:0006886,GO:0006888,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016192,GO:0033036,GO:0034613,GO:0042886,GO:0045184,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705
Exons2
EggNOG free text desc.vesicle-mediated transport
EggNOG OGsKOG0307@1,KOG0307@2759
Cds size261
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462990.1324766-CDS-Ecto-sp13_S_contig19533:2463..25821681462990.1324766-CDS-Ecto-sp13_S_contig19533:2463..2582Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19533 2464..2582 -
1681462990.1449466-CDS-Ecto-sp13_S_contig19533:3062..32041681462990.1449466-CDS-Ecto-sp13_S_contig19533:3062..3204Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19533 3063..3204 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462990.1546657-UTR-Ecto-sp13_S_contig19533:3204..32191681462990.1546657-UTR-Ecto-sp13_S_contig19533:3204..3219Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19533 3205..3219 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19533.6291.1prot_Ecto-sp13_S_contig19533.6291.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19533 2464..3204 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19533.6291.1

>prot_Ecto-sp13_S_contig19533.6291.1 ID=prot_Ecto-sp13_S_contig19533.6291.1|Name=mRNA_Ecto-sp13_S_contig19533.6291.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=87bp
MATAAQNGSCIVWDLKQKKPWCELRDPNRAPITDVAWNPDQGQHLVTASG
DDNNPVLKLWDLRSSTTLPLATLSGHSEGVLSVAWCP
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mRNA from alignment at Ecto-sp13_S_contig19533:2464..3219-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19533.6291.1 ID=mRNA_Ecto-sp13_S_contig19533.6291.1|Name=mRNA_Ecto-sp13_S_contig19533.6291.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=756bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19533:2464..3219- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGTCCCACATCATGGCGACCGCCGCCCAGAACGGGTCGTGCATCGT
TTGGGACCTAAAGCAAAAGAAGCCGTGGTGCGAGCTGAGGGACCCCAACC
GGGCTCCGATCACGGACGTTGCTTGGAACCCGGACCAAGGGCAGCATCTC
GTTACCGGTGGGAGAGACAGAAATGAGGCAGAGACAGAGACAGACAGAGA
CAGACAGGCAGACAGAGAGGCAGACAGAGACAGACAGTGGAGAGAGGAAG
AGATACGAAGAGACACAGAGACAGAGATAGAGACTGACGACATGCAGAGA
GATAGGTTGAGAGAGATCGAGAGAGAGATAGAGAGAGAGGTGCGGATAGA
CAGGCAGACAGGCGGACAAGTAGCCGCCGTTATGGCCACGGTGTGTGTGC
GTGTGCAGGGTGCTCTCTCTCTCTATCTCTCCCTCCCTCCCTCCCTCCCT
CTCTCTCTCTGCTATTCTTGCAGTGTCATCCTCGGCCGCCCTGTGGTCGT
GTGCCTTGTGCTACCTACCAACCTATCGGTGTTTTTTTTTTCACGCGTCG
TGTGTTGTTGCGTGCACCCCATCTGTTTCTGTGTATTGTATGGACTGACT
GCTGACTGGTGTCGTATGGTGGTATGGTGGTTTGCAGCCTCCGGGGACGA
CAATAACCCGGTGCTCAAGCTGTGGGATCTCCGGTCCTCGACAACCCTGC
CGCTGGCCACACTCTCGGGACACTCGGAGGGCGTCCTCTCCGTGGCGTGG
TGCCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19533:2464..3219-

>mRNA_Ecto-sp13_S_contig19533.6291.1 ID=mRNA_Ecto-sp13_S_contig19533.6291.1|Name=mRNA_Ecto-sp13_S_contig19533.6291.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19533:2464..3219- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGACCGCCGCCCAGAACGGGTCGTGCATCGTTTGGGACCTAAAGCA
AAAGAAGCCGTGGTGCGAGCTGAGGGACCCCAACCGGGCTCCGATCACGG
ACGTTGCTTGGAACCCGGACCAAGGGCAGCATCTCGTTACCGCCTCCGGG
GACGACAATAACCCGGTGCTCAAGCTGTGGGATCTCCGGTCCTCGACAAC
CCTGCCGCTGGCCACACTCTCGGGACACTCGGAGGGCGTCCTCTCCGTGG
CGTGGTGCCCG
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