mRNA_Ecto-sp13_S_contig1953.6287.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1953.6287.1
Unique NamemRNA_Ecto-sp13_S_contig1953.6287.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1953.6287.1 vs. uniprot
Match: A0A6H5JRK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK9_9PHAE)

HSP 1 Score: 684 bits (1765), Expect = 3.010e-238
Identity = 411/464 (88.58%), Postives = 418/464 (90.09%), Query Frame = 1 
Query:    1 ENGTNGQEEGFPASLPGTPQPGSGINSTSSPSSETLGDEATAVTHPGVTADAPPAAVNGAAPTNIDGGAVSSYSAFSGIFRRALTATALPPDTPTAHGSPSVCHDAQLRQHQHGLDGSGGDGTRDENPLALCPTGDGGGSSGDIALVLGEEKQSENDSHTTTDAARPRGRPLLRPSGGASTGTPWMHRFWARLSGDSCRHEAGTRWGMGGGPAFGVSDGSPERSSGEIVSPEGSLVEAAAFEGHHGLVDALSHRRRVARWARLTGGSRAQERGRGSSDGHLTSAAXXXXXXXXXXXRGGRNNRRSRGNAAGCVVGATADRQVSPEPAVLATPSPPEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEVSQAERGFVPRGGGVAEDAGNGDEERGEERPSFAPGDTESMSPALPRARMLWRAFSEVDHNKIEDNHRRAAQRHLARFDPAPGVRNPPMCYGPI 1392
            +NGTNGQEEGFPASLP TPQPGS I STSS SSETLGDEAT V H GVTADAPPAAVNGAAPTNIDGGAVSSYSAFS IFRRALTATALPPDTPT+HGS SVCH AQLRQ QHGLDGSGGDG  DENP ALCPTGDGGGSSGDIALV GEEKQSEN SHTTTDAARPRGRP LRPSGGAS+GTPWMHRFWAR SGDSC HEAG RWG GGG A GVSDG P+RSS E  SPEGSL EAAAFEGHHGLVDALSHRRRVARWARL G SRAQERGRGSSDGHLT AAXXXXXXXXXXX       RSRGNAAGCVVGATADRQVSPEPAVLATP+PPE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  VSQAERGF+PRGGG+AEDAGNGD ERGEER SFAPGDTESMSP LPRARMLWRAFSEVDHNKIEDNHRRAAQRHLAR DPAPGVRNP MCYGPI
Sbjct:  258 KNGTNGQEEGFPASLPCTPQPGSSIGSTSSRSSETLGDEATTVAHAGVTADAPPAAVNGAAPTNIDGGAVSSYSAFSEIFRRALTATALPPDTPTSHGSLSVCHGAQLRQQQHGLDGSGGDGNSDENP-ALCPTGDGGGSSGDIALVWGEEKQSENGSHTTTDAARPRGRPFLRPSGGASSGTPWMHRFWARFSGDSCSHEAGRRWGTGGGHASGVSDGPPQRSSRENDSPEGSLGEAAAFEGHHGLVDALSHRRRVARWARLAGRSRAQERGRGSSDGHLTFAAXXXXXXXXXXXXXXXXXSRSRGNAAGCVVGATADRQVSPEPAVLATPTPPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV-VSQAERGFLPRGGGIAEDAGNGDGERGEERGSFAPGDTESMSPGLPRARMLWRAFSEVDHNKIEDNHRRAAQRHLARLDPAPGVRNPSMCYGPI 719
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BLAST of mRNA_Ecto-sp13_S_contig1953.6287.1 vs. uniprot
Match: D7FU87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU87_ECTSI)

HSP 1 Score: 612 bits (1578), Expect = 2.860e-211
Identity = 378/464 (81.47%), Postives = 393/464 (84.70%), Query Frame = 1 
Query:    1 ENGTNGQEEGFPASLPGTPQPGSGINSTSSPSSETLGDEATAVTHPGVTADAPPAAVNGAAPTNIDGGAVSSYSAFSGIFRRALTATALPPDTPTAHGSPSVCHDAQLRQHQHGLDGSGGDGTRDENPLALCPTGDGGGSSGDIALVLGEEKQSENDSHTTTDAARPRGRPLLRPSGGASTGTPWMHRFWARLSGDSCRHEAGTRWGMGGGPAFGVSDGSPERSSGEIVSPEGSLVEAAAFEGHHGLVDALSHRRRVARWARLTGGSRAQERGRGSSDGHLTSAAXXXXXXXXXXXRGGRNNRRSRGNAAGCVVGATADRQVSPEPAVLATPSPPEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEVSQAERGFVPRGGGVAEDAGNGDEERGEERPSFAPGDTESMSPALPRARMLWRAFSEVDHNKIEDNHRRAAQRHLARFDPAPGVRNPPMCYGPI 1392
            +N TNGQE+GFPASLP TPQPGS I STSS  SE L DEA AVTH GVTADAPPAA+ GAAP NIDGGA SSYSAFSG+FRRALTATALPPDTPTAHGSPS  H AQLRQ QHGLDG+GGDG+ D+NPLALCPTGDGGGSSGDIALV GEEKQSEN SHTTTDAARPRGRP LR SGGAS  TPW HRFWAR SGDSCRHEAG RWG GGGPA GVS+GSPERSSGE                HHGL DALSHRRR A  ARL GGSRAQERGRG  DGHLTSA XXXXXXXXXXX       RSRGNAAGCVVGATAD+QVSPEPAVLATP+P   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAE+S+ ERG  PRGGGVAEDAGNGDEERGE+R SF PGDTES+ P LPRARMLWRAFSEVDHNKIEDNHRRAAQRHLARF PAPGVRNPPMCYGP+
Sbjct:  175 KNDTNGQEDGFPASLPCTPQPGSSIGSTSS--SENLVDEAAAVTHAGVTADAPPAAIKGAAPVNIDGGAASSYSAFSGMFRRALTATALPPDTPTAHGSPSAGHGAQLRQQQHGLDGNGGDGSSDQNPLALCPTGDGGGSSGDIALVWGEEKQSENGSHTTTDAARPRGRPFLRSSGGASDRTPWTHRFWARSSGDSCRHEAGRRWGTGGGPASGVSNGSPERSSGEXXXXXXXXXXXXXXXXHHGLFDALSHRRREAHRARLAGGSRAQERGRGG-DGHLTSAXXXXXXXXXXXXXX-----RSRGNAAGCVVGATADQQVSPEPAVLATPAP-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEISRVERGCPPRGGGVAEDAGNGDEERGEDRGSFPPGDTESIPPGLPRARMLWRAFSEVDHNKIEDNHRRAAQRHLARFGPAPGVRNPPMCYGPM 629
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1953.6287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JRK9_9PHAE3.010e-23888.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FU87_ECTSI2.860e-21181.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1953contigEcto-sp13_S_contig1953:540..2376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1837
Hectar predicted targeting categoryother localisation
Exons1
Cds size840
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462989.7159483-UTR-Ecto-sp13_S_contig1953:539..10941681462989.7159483-UTR-Ecto-sp13_S_contig1953:539..1094Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1953 540..1094 +
1681462989.7446988-UTR-Ecto-sp13_S_contig1953:1934..23761681462989.7446988-UTR-Ecto-sp13_S_contig1953:1934..2376Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1953 1935..2376 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462989.729584-CDS-Ecto-sp13_S_contig1953:1094..19341681462989.729584-CDS-Ecto-sp13_S_contig1953:1094..1934Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1953 1095..1934 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1953.6287.1prot_Ecto-sp13_S_contig1953.6287.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1953 1095..1934 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1953.6287.1

>prot_Ecto-sp13_S_contig1953.6287.1 ID=prot_Ecto-sp13_S_contig1953.6287.1|Name=mRNA_Ecto-sp13_S_contig1953.6287.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=280bp
MHRFWARLSGDSCRHEAGTRWGMGGGPAFGVSDGSPERSSGEIVSPEGSL
VEAAAFEGHHGLVDALSHRRRVARWARLTGGSRAQERGRGSSDGHLTSAA
AAAAAAAAEADRGGRNNRRSRGNAAGCVVGATADRQVSPEPAVLATPSPP
EAAAGSAPRSSITTTNDNEGGGDEVTAAGGGAAAEVSQAERGFVPRGGGV
AEDAGNGDEERGEERPSFAPGDTESMSPALPRARMLWRAFSEVDHNKIED
NHRRAAQRHLARFDPAPGVRNPPMCYGPI*
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mRNA from alignment at Ecto-sp13_S_contig1953:540..2376+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1953.6287.1 ID=mRNA_Ecto-sp13_S_contig1953.6287.1|Name=mRNA_Ecto-sp13_S_contig1953.6287.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1837bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1953:540..2376+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAAAATGGCACCAACGGCCAGGAGGAGGGGTTTCCTGCTTCACTTCCGGG
CACCCCCCAGCCCGGCAGCGGCATCAATAGCACCAGCAGCCCCAGCAGCG
AAACCCTAGGCGACGAGGCAACTGCTGTCACCCATCCCGGAGTTACCGCG
GATGCTCCTCCCGCCGCAGTCAACGGCGCCGCTCCCACGAACATCGACGG
TGGCGCGGTTTCGAGTTACTCGGCTTTTTCGGGAATATTTCGGCGCGCGC
TCACTGCGACCGCCCTCCCTCCCGACACCCCAACCGCACACGGCTCTCCC
TCCGTGTGCCACGACGCACAACTCCGGCAGCATCAGCACGGGCTCGACGG
CAGCGGTGGAGATGGCACCCGCGATGAAAACCCCCTCGCCTTGTGCCCCA
CCGGCGACGGCGGCGGCAGCAGTGGCGATATTGCTTTGGTCTTGGGAGAA
GAGAAGCAGAGCGAGAACGACAGTCACACCACCACCGACGCCGCGCGACC
TCGTGGCCGCCCGCTCCTGAGGCCGTCCGGCGGCGCTAGCACCGGAACGC
CCTGGATGCATCGTTTCTGGGCGAGGTTGAGCGGAGACAGCTGCAGGCAT
GAAGCGGGCACAAGGTGGGGTATGGGAGGGGGCCCCGCGTTTGGGGTTTC
GGACGGTTCTCCAGAACGTTCTTCGGGGGAGATCGTTTCTCCAGAAGGTT
CTTTGGTGGAGGCCGCCGCCTTCGAGGGACACCACGGGTTGGTCGACGCC
CTGTCGCACCGAAGGAGGGTGGCCCGTTGGGCCCGCCTGACCGGCGGGAG
TCGGGCTCAGGAAAGGGGGCGCGGTAGCAGCGACGGACACCTGACTTCCG
CCGCCGCCGCCGCCGCCGCCGCCGCCGCAGAGGCCGACAGAGGTGGTCGC
AACAACAGGAGGAGCCGAGGAAACGCTGCTGGCTGTGTTGTTGGTGCGAC
GGCGGACCGGCAGGTGTCGCCGGAACCAGCCGTCCTCGCGACGCCAAGTC
CGCCGGAAGCCGCAGCCGGGAGCGCGCCACGCAGCAGCATCACCACTACC
AACGATAACGAGGGAGGAGGAGACGAGGTAACAGCGGCAGGAGGCGGAGC
TGCCGCAGAGGTTTCCCAGGCGGAGAGAGGTTTCGTACCCCGAGGGGGCG
GTGTTGCCGAAGACGCAGGGAACGGTGACGAAGAACGGGGAGAAGAACGC
CCGTCCTTTGCCCCTGGAGACACGGAGTCGATGTCCCCGGCGTTGCCGAG
GGCGAGGATGTTGTGGCGCGCGTTTTCGGAGGTGGATCACAACAAGATCG
AGGACAACCATCGCCGGGCGGCGCAGCGACACCTTGCGAGATTTGACCCG
GCGCCCGGAGTCCGAAATCCGCCTATGTGTTACGGGCCCATTTAGTATTT
TTCTTGCCATCTTATTTTTCGTTCTAGAAAGGTGTACCCCTCTTTGGGTA
GTAGTTGGTCTGTGACCTAGGAAGGCGTCCGGTCAGTTTGACCAGTACGG
ACATCAGAAGGCACTGCAGGGGAGGCCGGAACGGTGTTTAATTACTGTTG
AGACAGCAGCAGCAGCAGCAGCAACAACAACAACAATCGCCGATGTTTTC
GTTTCTCCGATGTGCACCTTATTTAGGCCGCCTCTGGGGTTGTGTTGTGC
TGTCGAGCAAGCTAAGGGGCAAGGTAGCAGGCGTTTACCACAGAGAGGCG
AAGAAGACACGAGGTTGCGCGTGCGCAGCGTACCTGCTTTCTTCCCGTTC
CCCGTCATTAGCTGTGTTGTGTGTGCGTGTGTGTGTGATGTGTGCGTGTG
TGATGTTATCAAGTTTTTCGAGAGTTTCTCGCCGGCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1953:540..2376+

>mRNA_Ecto-sp13_S_contig1953.6287.1 ID=mRNA_Ecto-sp13_S_contig1953.6287.1|Name=mRNA_Ecto-sp13_S_contig1953.6287.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=840bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1953:540..2376+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCATCGTTTCTGGGCGAGGTTGAGCGGAGACAGCTGCAGGCATGAAGC
GGGCACAAGGTGGGGTATGGGAGGGGGCCCCGCGTTTGGGGTTTCGGACG
GTTCTCCAGAACGTTCTTCGGGGGAGATCGTTTCTCCAGAAGGTTCTTTG
GTGGAGGCCGCCGCCTTCGAGGGACACCACGGGTTGGTCGACGCCCTGTC
GCACCGAAGGAGGGTGGCCCGTTGGGCCCGCCTGACCGGCGGGAGTCGGG
CTCAGGAAAGGGGGCGCGGTAGCAGCGACGGACACCTGACTTCCGCCGCC
GCCGCCGCCGCCGCCGCCGCCGCAGAGGCCGACAGAGGTGGTCGCAACAA
CAGGAGGAGCCGAGGAAACGCTGCTGGCTGTGTTGTTGGTGCGACGGCGG
ACCGGCAGGTGTCGCCGGAACCAGCCGTCCTCGCGACGCCAAGTCCGCCG
GAAGCCGCAGCCGGGAGCGCGCCACGCAGCAGCATCACCACTACCAACGA
TAACGAGGGAGGAGGAGACGAGGTAACAGCGGCAGGAGGCGGAGCTGCCG
CAGAGGTTTCCCAGGCGGAGAGAGGTTTCGTACCCCGAGGGGGCGGTGTT
GCCGAAGACGCAGGGAACGGTGACGAAGAACGGGGAGAAGAACGCCCGTC
CTTTGCCCCTGGAGACACGGAGTCGATGTCCCCGGCGTTGCCGAGGGCGA
GGATGTTGTGGCGCGCGTTTTCGGAGGTGGATCACAACAAGATCGAGGAC
AACCATCGCCGGGCGGCGCAGCGACACCTTGCGAGATTTGACCCGGCGCC
CGGAGTCCGAAATCCGCCTATGTGTTACGGGCCCATTTAG
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