mRNA_Ecto-sp13_S_contig19524.6285.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig19524.6285.1 vs. uniprot
Match: D7FW88_ECTSI (40S ribosomal protein S21 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW88_ECTSI) HSP 1 Score: 133 bits (334), Expect = 3.610e-36 Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1
Query: 1 SWTNRLLQAKDHSSTQINVGKLDPVSGTFTGESDVYALAGYLRGRGEADEALTCLVNKKDESEL 192
SWTNRLLQAKDHSSTQINVGKLDPVSGTFTGESDVYALAGYLRGRGEADEALTCLVNKKDESEL
Sbjct: 18 SWTNRLLQAKDHSSTQINVGKLDPVSGTFTGESDVYALAGYLRGRGEADEALTCLVNKKDESEL 81
BLAST of mRNA_Ecto-sp13_S_contig19524.6285.1 vs. uniprot
Match: A0A1Z5KP36_FISSO (40S ribosomal protein S21 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KP36_FISSO) HSP 1 Score: 81.6 bits (200), Expect = 2.790e-16 Identity = 37/64 (57.81%), Postives = 49/64 (76.56%), Query Frame = 1
Query: 1 SWTNRLLQAKDHSSTQINVGKLDPVSGTFTGESDVYALAGYLRGRGEADEALTCLVNKKDESEL 192
S+TNRL+QAKDH++ QINV +DPV+G TG+S+VY LAGY+R + E D ALT LV KD + +
Sbjct: 18 SYTNRLIQAKDHAAVQINVANVDPVTGIMTGDSNVYCLAGYIRFKSEGDMALTSLVRAKDAAAV 81
BLAST of mRNA_Ecto-sp13_S_contig19524.6285.1 vs. uniprot
Match: G4ZUD9_PHYSP (40S ribosomal protein S21 n=7 Tax=Peronosporaceae TaxID=4777 RepID=G4ZUD9_PHYSP) HSP 1 Score: 80.1 bits (196), Expect = 9.280e-16 Identity = 37/60 (61.67%), Postives = 47/60 (78.33%), Query Frame = 1
Query: 1 SWTNRLLQAKDHSSTQINVGKLDPVSGTFTGESDVYALAGYLRGRGEADEALTCLVNKKD 180
SWTNR+L AKDH+S QINVG+++ +G FTGESD YALAGY+R GE D+A+T L + D
Sbjct: 18 SWTNRILAAKDHASVQINVGRVN-ANGVFTGESDTYALAGYIRHHGEGDQAITELARQTD 76
BLAST of mRNA_Ecto-sp13_S_contig19524.6285.1 vs. uniprot
Match: K3WSU9_GLOUD (40S ribosomal protein S21 n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WSU9_GLOUD) HSP 1 Score: 78.2 bits (191), Expect = 4.920e-15 Identity = 37/60 (61.67%), Postives = 47/60 (78.33%), Query Frame = 1
Query: 1 SWTNRLLQAKDHSSTQINVGKLDPVSGTFTGESDVYALAGYLRGRGEADEALTCLVNKKD 180
SWTNR+L AKDH+S QINV +++ +G FTGESD +ALAGY+R +GEAD ALT L + D
Sbjct: 18 SWTNRILAAKDHASVQINVARVN-ANGVFTGESDTFALAGYIRSKGEADLALTELARQAD 76
BLAST of mRNA_Ecto-sp13_S_contig19524.6285.1 vs. uniprot
Match: A0A448Z9N0_9STRA (40S ribosomal protein S21 n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z9N0_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 2.190e-14 Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 1
Query: 1 SWTNRLLQAKDHSSTQINVGKLDPVSGTFTGESDVYALAGYLRGRGEADEALTCLVNKKD 180
+WTNRL++AKDHSS Q+NV +DPV+G TG++ Y L GY+R E D ALT LV K D
Sbjct: 18 NWTNRLVEAKDHSSVQVNVANVDPVTGLATGDATPYCLVGYIRKISEGDMALTALVEKND 77
BLAST of mRNA_Ecto-sp13_S_contig19524.6285.1 vs. uniprot
Match: A0A7S1UVR1_9STRA (40S ribosomal protein S21 n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UVR1_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 3.220e-14 Identity = 36/60 (60.00%), Postives = 43/60 (71.67%), Query Frame = 1
Query: 1 SWTNRLLQAKDHSSTQINVGKLDPVSGTFTGESDVYALAGYLRGRGEADEALTCLVNKKD 180
S+TNRL+ AKDHSS QINV +DPV+G TG+ Y L GYLR + E D ALT L+ KKD
Sbjct: 18 SYTNRLVSAKDHSSVQINVANVDPVTGIATGDYTPYCLCGYLRFKSEGDMALTTLITKKD 77
BLAST of mRNA_Ecto-sp13_S_contig19524.6285.1 vs. uniprot
Match: A0A0P1AAL2_PLAHL (40S ribosomal protein S21 n=16 Tax=Peronosporaceae TaxID=4777 RepID=A0A0P1AAL2_PLAHL) HSP 1 Score: 75.9 bits (185), Expect = 3.630e-14 Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 1
Query: 1 SWTNRLLQAKDHSSTQINVGKLDPVSGTFTGESDVYALAGYLRGRGEADEALTCLVNKKD 180
SWTNR+L AKDH+S QINVG+++ +G FTGESD +ALAGY+R GE D A+T L + D
Sbjct: 18 SWTNRILAAKDHASVQINVGRVN-ANGVFTGESDTFALAGYIRHHGEGDIAITELSRQAD 76
BLAST of mRNA_Ecto-sp13_S_contig19524.6285.1 vs. uniprot
Match: A0A067BLB8_SAPPC (40S ribosomal protein S21 n=5 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BLB8_SAPPC) HSP 1 Score: 75.9 bits (185), Expect = 3.630e-14 Identity = 35/61 (57.38%), Postives = 46/61 (75.41%), Query Frame = 1
Query: 1 SWTNRLLQAKDHSSTQINVGKLDPVSGTFTGESDVYALAGYLRGRGEADEALTCLVNKKDE 183
SWTNR+L AKDH+S QI V ++D +G +TG +DVYALAGY+R +GE D ALT L + +E
Sbjct: 18 SWTNRILAAKDHASVQIAVAQVD-ANGVYTGHNDVYALAGYIRNKGEGDHALTELARRAEE 77
BLAST of mRNA_Ecto-sp13_S_contig19524.6285.1 vs. uniprot
Match: A0A1E7F2P4_9STRA (40S ribosomal protein S21 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F2P4_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 5.920e-14 Identity = 35/60 (58.33%), Postives = 43/60 (71.67%), Query Frame = 1
Query: 1 SWTNRLLQAKDHSSTQINVGKLDPVSGTFTGESDVYALAGYLRGRGEADEALTCLVNKKD 180
+WTNRL++AKDHSS QINV +DPV+G TG++ Y L GY+R E D ALT LV K D
Sbjct: 18 NWTNRLVEAKDHSSVQINVANVDPVTGMATGDATPYCLVGYIRMVSEGDMALTQLVKKND 77
BLAST of mRNA_Ecto-sp13_S_contig19524.6285.1 vs. uniprot
Match: F0YCY8_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCY8_AURAN) HSP 1 Score: 73.9 bits (180), Expect = 1.900e-13 Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 1
Query: 1 SWTNRLLQAKDHSSTQINVGKLDPVSGTFTGESDVYALAGYLRGRGEADEALTCLVNKKDES 186
SWTNRL++A D +S QINVG +D +G +T YAL+GY+R +GE+D ALT LV K DE+
Sbjct: 17 SWTNRLIEAFDKASVQINVGSIDANTGLYTNTYKTYALSGYVRNKGESDMALTDLVRKSDEA 78 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19524.6285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig19524.6285.1 >prot_Ecto-sp13_S_contig19524.6285.1 ID=prot_Ecto-sp13_S_contig19524.6285.1|Name=mRNA_Ecto-sp13_S_contig19524.6285.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=65bp SWTNRLLQAKDHSSTQINVGKLDPVSGTFTGESDVYALAGYLRGRGEADEback to top mRNA from alignment at Ecto-sp13_S_contig19524:329..2456+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig19524.6285.1 ID=mRNA_Ecto-sp13_S_contig19524.6285.1|Name=mRNA_Ecto-sp13_S_contig19524.6285.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2128bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19524:329..2456+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19524:329..2456+ >mRNA_Ecto-sp13_S_contig19524.6285.1 ID=mRNA_Ecto-sp13_S_contig19524.6285.1|Name=mRNA_Ecto-sp13_S_contig19524.6285.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19524:329..2456+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |