mRNA_Ecto-sp13_S_contig19522.6284.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19522.6284.1
Unique NamemRNA_Ecto-sp13_S_contig19522.6284.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19522.6284.1 vs. uniprot
Match: D7FW99_ECTSI (PObg1, plastid Obg/CgtA-like GTPase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW99_ECTSI)

HSP 1 Score: 192 bits (489), Expect = 2.490e-56
Identity = 106/120 (88.33%), Postives = 110/120 (91.67%), Query Frame = 1 
Query:    1 MTRTHRSRRIPLLTLAACIVLLQRGNCFLLIPNTAARSGSHGYGSTATATLHPAAAAPSPLSPARCRSSRVGIRRGRGGVRIMGSGNVAAAAEALEAEEKAEREALRARNDQEWQFFDTA 360
            MTRTHRSRRI L TLAACIVLLQRGNCFLLIPNTAARSGSH + STATATLH AAAAPSP SPARCR+S VG RRGRGGV++MG GN AAAAEALEAEEKAEREALRARNDQEWQFFDTA
Sbjct:    1 MTRTHRSRRIRLPTLAACIVLLQRGNCFLLIPNTAARSGSHRFRSTATATLHRAAAAPSPFSPARCRTSVVGGRRGRGGVQMMGGGNAAAAAEALEAEEKAEREALRARNDQEWQFFDTA 120
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19522.6284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FW99_ECTSI2.490e-5688.33PObg1, plastid Obg/CgtA-like GTPase 1 n=2 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19522contigEcto-sp13_S_contig19522:2..361 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score196.1
Seed ortholog evalue9.7e-48
Seed eggNOG ortholog2880.D7FW99
Model size360
KEGG koko:K03979
Hectar predicted targeting categorysignal peptide
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0003924,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009507,GO:0009526,GO:0009528,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009657,GO:0009658,GO:0009668,GO:0009706,GO:0009790,GO:0009791,GO:0009793,GO:0009941,GO:0009987,GO:0010027,GO:0010154,GO:0010467,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0019866,GO:0022414,GO:0022613,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0032501,GO:0032502,GO:0034470,GO:0034641,GO:0034660,GO:0042170,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0061024,GO:0061458,GO:0071704,GO:0071840,GO:0090304,GO:1901360
Exons1
EggNOG free text desc.GTP-binding protein
EggNOG OGsCOG0536@1,KOG1489@2759
Cds size360
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462989.5531-CDS-Ecto-sp13_S_contig19522:1..3611681462989.5531-CDS-Ecto-sp13_S_contig19522:1..361Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19522 2..361 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19522.6284.1prot_Ecto-sp13_S_contig19522.6284.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19522 2..361 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19522.6284.1

>prot_Ecto-sp13_S_contig19522.6284.1 ID=prot_Ecto-sp13_S_contig19522.6284.1|Name=mRNA_Ecto-sp13_S_contig19522.6284.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=120bp
MTRTHRSRRIPLLTLAACIVLLQRGNCFLLIPNTAARSGSHGYGSTATAT
LHPAAAAPSPLSPARCRSSRVGIRRGRGGVRIMGSGNVAAAAEALEAEEK
AEREALRARNDQEWQFFDTA
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mRNA from alignment at Ecto-sp13_S_contig19522:2..361-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19522.6284.1 ID=mRNA_Ecto-sp13_S_contig19522.6284.1|Name=mRNA_Ecto-sp13_S_contig19522.6284.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=360bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19522:2..361- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCAGGACACACAGATCGAGAAGAATACCGTTGCTAACGCTGGCCGC
GTGCATTGTCCTCCTCCAGCGGGGCAATTGTTTCCTCTTGATACCCAACA
CAGCAGCCAGAAGCGGCTCCCACGGGTATGGATCAACAGCAACAGCAACT
CTGCACCCCGCTGCTGCTGCCCCATCGCCACTTTCACCAGCGCGATGTAG
GTCGAGCAGGGTGGGTATAAGGAGAGGACGAGGAGGAGTGCGGATAATGG
GGAGCGGGAACGTAGCAGCAGCTGCTGAAGCCTTGGAGGCCGAGGAGAAG
GCGGAGCGGGAGGCCTTGAGGGCAAGGAATGATCAGGAGTGGCAGTTCTT
CGACACGGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19522:2..361-

>mRNA_Ecto-sp13_S_contig19522.6284.1 ID=mRNA_Ecto-sp13_S_contig19522.6284.1|Name=mRNA_Ecto-sp13_S_contig19522.6284.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=360bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19522:2..361- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCAGGACACACAGATCGAGAAGAATACCGTTGCTAACGCTGGCCGC
GTGCATTGTCCTCCTCCAGCGGGGCAATTGTTTCCTCTTGATACCCAACA
CAGCAGCCAGAAGCGGCTCCCACGGGTATGGATCAACAGCAACAGCAACT
CTGCACCCCGCTGCTGCTGCCCCATCGCCACTTTCACCAGCGCGATGTAG
GTCGAGCAGGGTGGGTATAAGGAGAGGACGAGGAGGAGTGCGGATAATGG
GGAGCGGGAACGTAGCAGCAGCTGCTGAAGCCTTGGAGGCCGAGGAGAAG
GCGGAGCGGGAGGCCTTGAGGGCAAGGAATGATCAGGAGTGGCAGTTCTT
CGACACGGCC
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