prot_Ecto-sp13_S_contig19522.6284.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig19522.6284.1
Unique Nameprot_Ecto-sp13_S_contig19522.6284.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length120
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19522.6284.1 vs. uniprot
Match: D7FW99_ECTSI (PObg1, plastid Obg/CgtA-like GTPase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW99_ECTSI)

HSP 1 Score: 192 bits (489), Expect = 2.490e-56
Identity = 106/120 (88.33%), Postives = 110/120 (91.67%), Query Frame = 0 
Query:    1 MTRTHRSRRIPLLTLAACIVLLQRGNCFLLIPNTAARSGSHGYGSTATATLHPAAAAPSPLSPARCRSSRVGIRRGRGGVRIMGSGNVAAAAEALEAEEKAEREALRARNDQEWQFFDTA 120
            MTRTHRSRRI L TLAACIVLLQRGNCFLLIPNTAARSGSH + STATATLH AAAAPSP SPARCR+S VG RRGRGGV++MG GN AAAAEALEAEEKAEREALRARNDQEWQFFDTA
Sbjct:    1 MTRTHRSRRIRLPTLAACIVLLQRGNCFLLIPNTAARSGSHRFRSTATATLHRAAAAPSPFSPARCRTSVVGGRRGRGGVQMMGGGNAAAAAEALEAEEKAEREALRARNDQEWQFFDTA 120
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19522.6284.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FW99_ECTSI2.490e-5688.33PObg1, plastid Obg/CgtA-like GTPase 1 n=2 Tax=Ecto... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 89..112
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 12..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..11
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 23..27
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 28..120
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..27
score: 0.69

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19522contigEcto-sp13_S_contig19522:2..361 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19522.6284.1mRNA_Ecto-sp13_S_contig19522.6284.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig19522 2..361 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig19522.6284.1 ID=prot_Ecto-sp13_S_contig19522.6284.1|Name=mRNA_Ecto-sp13_S_contig19522.6284.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=120bp
MTRTHRSRRIPLLTLAACIVLLQRGNCFLLIPNTAARSGSHGYGSTATAT
LHPAAAAPSPLSPARCRSSRVGIRRGRGGVRIMGSGNVAAAAEALEAEEK
AEREALRARNDQEWQFFDTA
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