mRNA_Ecto-sp13_S_contig1952.6282.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1952.6282.1 vs. uniprot
Match: A0A6H5KJL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJL2_9PHAE) HSP 1 Score: 316 bits (809), Expect = 6.880e-96 Identity = 165/219 (75.34%), Postives = 169/219 (77.17%), Query Frame = 3
Query: 96 VACCTGVTNTLKEDLRDKVNAMGGSFDVNLTMSTTHLLAASLDTEKYRVATGMKGVVVVRPDWVIESCREGRKLPCELHSLPPFEGLRITITGLSLDRKAELRAMIESGGGTYMGAMEARNTTHLVAEEATGMKYEAAISPEWNGSIKVVHSRWLQQSHARN---------------------------------------LRLPEEQFPVAPHHDEKQ 635
V C + +EDLR+KVNAMGGSFDVNLTMSTTHLLAASLDTEKYRVATGMKGVVVVRPDWV ESCREGRKLPCE HSLPPFEGLRITITGLSLDRKAELRAMIESGGG YMGAMEARNTTHLVAEEATGMKYEAAISPEWNGSIKVVHSRWLQQSHARN +RLPEEQFPVAPHHDEKQ
Sbjct: 13 VLCVNLLLGETQEDLREKVNAMGGSFDVNLTMSTTHLLAASLDTEKYRVATGMKGVVVVRPDWVTESCREGRKLPCERHSLPPFEGLRITITGLSLDRKAELRAMIESGGGEYMGAMEARNTTHLVAEEATGMKYEAAISPEWNGSIKVVHSRWLQQSHARNQARSPAWKPAPIVDIHPAERSDRPFCIVFPPLLLALSLPVRLPEEQFPVAPHHDEKQ 231
BLAST of mRNA_Ecto-sp13_S_contig1952.6282.1 vs. uniprot
Match: D7G795_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G795_ECTSI) HSP 1 Score: 300 bits (769), Expect = 1.300e-90 Identity = 146/151 (96.69%), Postives = 149/151 (98.68%), Query Frame = 3
Query: 129 KEDLRDKVNAMGGSFDVNLTMSTTHLLAASLDTEKYRVATGMKGVVVVRPDWVIESCREGRKLPCELHSLPPFEGLRITITGLSLDRKAELRAMIESGGGTYMGAMEARNTTHLVAEEATGMKYEAAISPEWNGSIKVVHSRWLQQSHARN 581
+EDLR+KVNAMGGSFDVNLTMSTTHLLAASLDTEKYRVATGMKGVVVVRPDWVIESCREGRKLPCE HSLPPFEGLRITITGLS+DRKAELRAMIESGGG YMGAMEARNTTHLVAEEATGMKYEAAISPEWNGSIKVVHSRWLQQSHARN
Sbjct: 21 QEDLREKVNAMGGSFDVNLTMSTTHLLAASLDTEKYRVATGMKGVVVVRPDWVIESCREGRKLPCECHSLPPFEGLRITITGLSMDRKAELRAMIESGGGEYMGAMEARNTTHLVAEEATGMKYEAAISPEWNGSIKVVHSRWLQQSHARN 171
BLAST of mRNA_Ecto-sp13_S_contig1952.6282.1 vs. uniprot
Match: K1PRR5_CRAGI (DNA topoisomerase 2-binding protein 1 n=1 Tax=Crassostrea gigas TaxID=29159 RepID=K1PRR5_CRAGI) HSP 1 Score: 109 bits (272), Expect = 7.680e-24 Identity = 63/180 (35.00%), Postives = 94/180 (52.22%), Query Frame = 3
Query: 93 VVACCTGVTNTLKEDLRDKVNAMGGSFDVNLTMSTTHLLAASLDTEKYRVATGMKGVVVVRPDWVIESCR-------EGRKLPCELHSLPPFEGLRITITGLSLDRKAELRAMIESGGGTYMGAMEARNTTHLVAEEATGMKYEAAISPEWNGSIKVVHSRWLQQSHARNLRLPEEQFPV 611
VV CCT + L+ +L +KV AMGG+ +LT S THL+A + ++KY+VA G + P WV + G +S P F+GL IT++GL + + +++ +E GG Y G M+ THL+ + G KYE A +W I +V S WL S + L E+QF +
Sbjct: 111 VVVCCTNLVKQLRNELHEKVEAMGGTVSRDLTSSVTHLIAGEVGSKKYQVAASA-GKQIYLPSWVNKVWEASQTKHIHGSSSQFLEYSCPIFKGLVITVSGLDSEERNQVKKAVEDEGGKYTGEMKVNECTHLIINKPKGAKYEFA--KKWR--INIVKSDWLYDSIEKGYCLEEKQFSL 285
BLAST of mRNA_Ecto-sp13_S_contig1952.6282.1 vs. uniprot
Match: UPI00148AD0A1 (DNA topoisomerase 2-binding protein 1-A n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148AD0A1) HSP 1 Score: 109 bits (272), Expect = 7.970e-24 Identity = 63/180 (35.00%), Postives = 94/180 (52.22%), Query Frame = 3
Query: 93 VVACCTGVTNTLKEDLRDKVNAMGGSFDVNLTMSTTHLLAASLDTEKYRVATGMKGVVVVRPDWVIESCR-------EGRKLPCELHSLPPFEGLRITITGLSLDRKAELRAMIESGGGTYMGAMEARNTTHLVAEEATGMKYEAAISPEWNGSIKVVHSRWLQQSHARNLRLPEEQFPV 611
VV CCT + L+ +L +KV AMGG+ +LT S THL+A + ++KY+VA G + P WV + G +S P F+GL IT++GL + + +++ +E GG Y G M+ THL+ + G KYE A +W I +V S WL S + L E+QF +
Sbjct: 111 VVVCCTNLVKQLRNELHEKVEAMGGTVSRDLTSSVTHLIAGEVGSKKYQVAASA-GKQIYLPSWVNKVWEASQTKHIHGSSSQFLEYSCPIFKGLVITVSGLDSEERNQVKKAVEDEGGKYTGEMKVNECTHLIINKPKGAKYEFA--KKWR--INIVKSDWLYDSIEKGYCLEEKQFSL 285
BLAST of mRNA_Ecto-sp13_S_contig1952.6282.1 vs. uniprot
Match: A0A087UFW7_STEMI (DNA topoisomerase 2-binding protein 1 (Fragment) n=1 Tax=Stegodyphus mimosarum TaxID=407821 RepID=A0A087UFW7_STEMI) HSP 1 Score: 108 bits (269), Expect = 1.920e-23 Identity = 57/166 (34.34%), Postives = 91/166 (54.82%), Query Frame = 3
Query: 93 VVACCTGVTNTLKEDLRDKVNAMGGSFDVNLTMSTTHLLAASLDTEKYRVATGMKGVVVVRPDWVIESCREGRKL-------PCELHSLPPFEGLRITITGLSLDRKAELRAMIESGGGTYMGAMEARNTTHLVAEEATGMKYEAAISPEWNGSIKVVHSRWLQQS 569
+ C+ + +ED+ KV MGG F +LT S THL+ + ++KY+VA G++++ PDWV G+ + + P F+GL IT++ LS + +A +++++E GG YMGA++AR TTHLV E +G KY A N + V+ W+ S
Sbjct: 112 ITVSCSNIDTKSREDINKKVELMGGFFSKDLTKSVTHLVVGEVGSKKYQVAASC-GLLIMVPDWVNAVWENGQHALLHATDSSFDKYKCPVFKGLIITVSQLSAEERAAIKSLVERNGGIYMGALKARETTHLVLSEPSGDKYRYAR----NWKVFCVNVSWIYDS 272
BLAST of mRNA_Ecto-sp13_S_contig1952.6282.1 vs. uniprot
Match: UPI0015AF7E8E (DNA topoisomerase 2-binding protein 1-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015AF7E8E) HSP 1 Score: 105 bits (261), Expect = 2.310e-22 Identity = 55/166 (33.13%), Postives = 90/166 (54.22%), Query Frame = 3
Query: 93 VVACCTGVTNTLKEDLRDKVNAMGGSFDVNLTMSTTHLLAASLDTEKYRVATGMKGVVVVRPDWVIESCREGRKL-------PCELHSLPPFEGLRITITGLSLDRKAELRAMIESGGGTYMGAMEARNTTHLVAEEATGMKYEAAISPEWNGSIKVVHSRWLQQS 569
+ C+ + +ED+ KV MGG F +LT S THL+ + ++KY+VA G++++ PDW+ G+ + + P F+GL IT++ LS + + +++++E GG YMGA++AR TTHLV E +G KY A N + V+ W+ S
Sbjct: 112 ITVSCSNIDTKSREDISKKVEFMGGFFSKDLTKSVTHLVVGEVGSKKYQVAASC-GLLIMVPDWINAIWESGQHSLLHATDSSFDKYKCPVFKGLVITVSQLSAEERTAIKSLVERNGGIYMGALKARETTHLVLSEPSGDKYRYAR----NWKVFCVNVSWIYDS 272
BLAST of mRNA_Ecto-sp13_S_contig1952.6282.1 vs. uniprot
Match: A0A4Y2J2I5_ARAVE (DNA topoisomerase 2-binding protein 1-A n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2J2I5_ARAVE) HSP 1 Score: 103 bits (257), Expect = 7.900e-22 Identity = 53/166 (31.93%), Postives = 91/166 (54.82%), Query Frame = 3
Query: 93 VVACCTGVTNTLKEDLRDKVNAMGGSFDVNLTMSTTHLLAASLDTEKYRVATGMKGVVVVRPDWVIESCREGRKL-------PCELHSLPPFEGLRITITGLSLDRKAELRAMIESGGGTYMGAMEARNTTHLVAEEATGMKYEAAISPEWNGSIKVVHSRWLQQS 569
+ C+ ++N +ED+R K+ MGG F +LT S THL+ + ++KYRVA G+ ++ P WV + G+ + + P F GL +T++ L+++ ++ +++++E GG+Y+ ++A TTHLV E TG KY A N I V+ W+ S
Sbjct: 112 ITVSCSNISNEKREDMRYKIELMGGFFSKDLTKSVTHLVVGEVGSKKYRVAANF-GLSIMMPAWVEDVWETGQHQLIHALDKAYDKYKCPVFRGLVVTVSQLTVNERSSIQSLVEENGGSYLAPLKANQTTHLVLTEPTGDKYRYAK----NWKIFCVNVNWVYDS 272
BLAST of mRNA_Ecto-sp13_S_contig1952.6282.1 vs. uniprot
Match: A0A8B8EDC5_CRAVI (DNA topoisomerase 2-binding protein 1-like isoform X1 n=2 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8EDC5_CRAVI) HSP 1 Score: 102 bits (255), Expect = 1.470e-21 Identity = 60/181 (33.15%), Postives = 95/181 (52.49%), Query Frame = 3
Query: 93 VVACCTGVTNTLKEDLRDKVNAMGGSFDVNLTMSTTHLLAASLDTEKYRVATGMKGVVVVRPDWVIESCR-------EGRKLPCELHSLPPFEGLRITITGLSLDRKAELRAMIESGGGTYMGAMEARNTTHLVAEEATGMKYEAAISPEWNGSIKVVHSRWLQQSHARNLRLPEEQFPVA 614
VV CCT + + +L +KV AMGG+ +LT + THL+A + ++KY+VA G + P WV + G ++ P F+GL IT++GL + + +++ +E+ GG Y G M+ THL+ + G KYE A +W I +V S WL S + L E+QF ++
Sbjct: 111 VVLCCTNLVKQKRNELHEKVEAMGGTVSRDLTNNVTHLIAGEVGSKKYQVAAST-GKQIYLPCWVDKVWEASQTKHIHGSSSQFLEYACPIFKGLVITVSGLDSEERNQVKKAVEAEGGKYTGEMKVNECTHLIINKPKGPKYEFA--KKWK--IHIVKSDWLYDSIEKGYCLEEKQFALS 286
BLAST of mRNA_Ecto-sp13_S_contig1952.6282.1 vs. uniprot
Match: A0A507CC56_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507CC56_9FUNG) HSP 1 Score: 102 bits (255), Expect = 1.480e-21 Identity = 60/185 (32.43%), Postives = 104/185 (56.22%), Query Frame = 3
Query: 84 LHGVVACCTGV-TNTLKEDLRDKVNAMGGSFDVNLTMSTTHLLAASLDTEKYRVATGMKGVVVVRPDWVIESCREGRKLPC-------ELHSLPPFEGLRITITGLS-LDRKAELRAMIESGGGTYMGAMEARNTTHLVAEEATGMKYEAAISPEWNGSIKVVHSRWLQQSHARNLRLPEEQFPV 611
L G++ C TG+ N L++D+ D++ MGG ++ T T+HL+A S + KY+ A ++ VV +P+W+ + R P + + LPPF GL I +TG + + ++++++ +IE GG + + + THLVA TG KY+ A+ W + +V WL++S + RL E ++PV
Sbjct: 8 LEGMLFCSTGLPANQLRDDMIDRIVKMGGQYNAAFTSDTSHLIALSTVSPKYKYAAKLEKPVV-KPEWIEVCWNQCRSSPSFDALSIMDEYRLPPFGGLVICVTGFTGVAQRSDIKKLIEDNGGVFSADL-LKTCTHLVASAPTGKKYDFAV--RWK--LMIVSLVWLEESVQKKARLEELEYPV 186
BLAST of mRNA_Ecto-sp13_S_contig1952.6282.1 vs. uniprot
Match: L0PGQ1_PNEJ8 (Uncharacterized protein n=1 Tax=Pneumocystis jirovecii (strain SE8) TaxID=1209962 RepID=L0PGQ1_PNEJ8) HSP 1 Score: 97.8 bits (242), Expect = 2.170e-21 Identity = 61/184 (33.15%), Postives = 94/184 (51.09%), Query Frame = 3
Query: 84 LHGVVACCTGVTNTLKEDLRDKVNAMGGSFDVNLTMSTTHLLAASLDTEKYR-VATGMKGVVVVRPDWVI---ESCREGRKLPC----ELHSLPPFEGLRITITGLSLDRKAELRAMIESGGGTYMGAMEARNTTHLVAEEATGMKYEAAISPEWNGSIKVVHSRWLQQSHARNLRLPEEQFPV 611
L G+V CCT + + +K DL K + +G + +LT THL+A L+T KY+ VA + ++ W+ E G + + H LPPF L I +T + ++++E+ I GG Y + ++TTHL+A +A+G KYE I +W IKV+ W QS R L E F +
Sbjct: 12 LCGIVVCCTSIPSEIKTDLALKASKLGAIYTQDLTSQVTHLIAGKLNTMKYKYVAMHRVDMKIMHVGWIFDIYEQWLNGDDIDFLEFEKKHILPPFYNLLICVTNIPAEQRSEIEEKITCFGGKYTPDLT-KDTTHLIATDASGRKYEFGI--KWG--IKVIRPEWFWQSIERGACLEEHFFSL 190 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1952.6282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1952.6282.1 >prot_Ecto-sp13_S_contig1952.6282.1 ID=prot_Ecto-sp13_S_contig1952.6282.1|Name=mRNA_Ecto-sp13_S_contig1952.6282.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=211bp MKRSRSGARQARGKGGNLLHGVVACCTGVTNTLKEDLRDKVNAMGGSFDVback to top mRNA from alignment at Ecto-sp13_S_contig1952:677..4419- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1952.6282.1 ID=mRNA_Ecto-sp13_S_contig1952.6282.1|Name=mRNA_Ecto-sp13_S_contig1952.6282.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3743bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1952:677..4419- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1952:677..4419- >mRNA_Ecto-sp13_S_contig1952.6282.1 ID=mRNA_Ecto-sp13_S_contig1952.6282.1|Name=mRNA_Ecto-sp13_S_contig1952.6282.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=633bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1952:677..4419- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |