mRNA_Ecto-sp13_S_contig1951.6278.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1951.6278.1
Unique NamemRNA_Ecto-sp13_S_contig1951.6278.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1951.6278.1 vs. uniprot
Match: D7FJI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJI2_ECTSI)

HSP 1 Score: 811 bits (2095), Expect = 6.360e-291
Identity = 535/579 (92.40%), Postives = 540/579 (93.26%), Query Frame = 1
Query:   16 MSTRRGAPAPAVVGSHFVKQYYGEVLSKKPVELHRFYKDESTFCHASGTKEEEPVSGLEDIKAKIKHLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITIANTDPRQFCQTFFLARQHQDNDRHNYFVRNDIFRFLDVLPEVVQAALKARDEEDGSTARSAPAPAEESSKPESVGEETVAAAVTQVKVQDTSAPQQTTDSPVATAAXXXSSPPSMAAGXXPPSESQVAASTDADAGAAXXXXXXXXXXXX-PAASAGLDNGSTEKTPASKVPPSPVAASTPAESTETSAAEVAPPASXXXXXXXXXXXXXMTYASLAKSWATVAADSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLTIEQPVSQPGPGVVQHGSRPSSATGKGQKGPGAYIPHHASPAVAASAXXXXXAAAAGNGEIMPATSLFVRKVDMTIDRDEMIAHFSAYGEVTGISMNPTRGYAFIDYRTNECVQIALSTKEHYVNRKLLVVEERHSPMVQRNSRGEHGGGRGGRNXXXXRVSSXXDGRDGDRRPTGRGGRDRPDGPKDGGYRARGRAE 1749
            MST+RGAPAPAVVGSHFVKQYYGEVLSKKPVELHRFYKDESTFCHASGTKEEEPVSGLEDIKAKIKHLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITIANTDPRQFCQTFFLARQHQDNDRHNYFVRNDIFRFLDVLPEVVQAALKARDEEDGSTARSA  PAEESSKPESVGEETVAAAVTQV VQDT  PQQTT SPVATAA   SSPP+MAAG  PPSESQVAASTDA     XXXXXXXXXXXX PAA AGLDNGS +KTPA+KVPPSPV ASTPAESTET+AAE      XXXXXXXXXXXXXMTYASLAKSWATVAADSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        LTIEQPV QPGPGVVQHGSRPSSATGKGQKGPGAYIPHHASPAVAASAXXXX AAAAGNGEIMPATSLFVRKVDMTIDRDEMIAHFSAYGEVTGISMNPTRGYAFIDYRTNECVQIALSTKEHYVNRKLLVVEERHSPMVQRNSRGEHGGGRGG  XXXXRVSSX DGRDGDRRPTGRGGRDRPDGPKDGGYRARGRAE
Sbjct:    1 MSTKRGAPAPAVVGSHFVKQYYGEVLSKKPVELHRFYKDESTFCHASGTKEEEPVSGLEDIKAKIKHLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITIANTDPRQFCQTFFLARQHQDNDRHNYFVRNDIFRFLDVLPEVVQAALKARDEEDGSTARSALPPAEESSKPESVGEETVAAAVTQVHVQDTPVPQQTTASPVATAAVPESSPPAMAAGAAPPSESQVAASTDAXXXXXXXXXXXXXXXXXAPAAVAGLDNGSADKTPAAKVPPSPVGASTPAESTETAAAEXXXXXXXXXXXXXXXXXXXMTYASLAKSWATVAADSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAVAGGAVLTIEQPVGQPGPGVVQHGSRPSSATGKGQKGPGAYIPHHASPAVAASAXXXXEAAAAGNGEIMPATSLFVRKVDMTIDRDEMIAHFSAYGEVTGISMNPTRGYAFIDYRTNECVQIALSTKEHYVNRKLLVVEERHSPMVQRNSRGEHGGGRGGXXXXXXRVSSXRDGRDGDRRPTGRGGRDRPDGPKDGGYRARGRAE 579          
BLAST of mRNA_Ecto-sp13_S_contig1951.6278.1 vs. uniprot
Match: A0A6H5L110_9PHAE (NTF2 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L110_9PHAE)

HSP 1 Score: 467 bits (1202), Expect = 1.800e-158
Identity = 296/334 (88.62%), Postives = 302/334 (90.42%), Query Frame = 1
Query:   16 MSTRRGAPAPAVVGSHFVKQYYGEVLSKKPVELHRFYKDESTFCHASGTKEEEPVSGLEDIKAKIKHLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITIANTDPRQFCQTFFLARQHQDNDRHNYFVRNDIFRFLDVLPEVVQAALKARDEEDGSTARSAPAPAEESSKPESVGEETVAAAVTQVKVQDTSAPQQTTDSPVATAAXXXSSPPSMAAGXXPPSESQVAASTDADAGAAXXXXXXXXXXXX--PAASAGLDNGSTEKTPASKVPPSPVAASTPAESTETSAAEVAPPASXXXXXXXXXXXXX---MTYASLAKSWATVAADSG 1002
            MSTRRGAPAPAVVGSHFVKQYYGEVLSKKPVELHRFYKDESTFCHASGTKEEEPVSGLEDIKAKIKHLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITIANTDPRQFCQTFFLARQHQDNDRHNYFVRNDIFRFLDVLPEVVQAALKARDEEDGS+A    APAEES KPESVGEETVAAAVTQV V+DTSAPQQTT SPVATAAXX SSPPSMAAG  PPSESQVA   DAD    XXXXXXXXXXXX  PAA AGLDNGS ++TPA+KVPPSPVAASTP ESTE +AAE      XXXXXXXXXXXXX   MTYASLAKSWATVAADSG
Sbjct:    1 MSTRRGAPAPAVVGSHFVKQYYGEVLSKKPVELHRFYKDESTFCHASGTKEEEPVSGLEDIKAKIKHLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITIANTDPRQFCQTFFLARQHQDNDRHNYFVRNDIFRFLDVLPEVVQAALKARDEEDGSSAL---APAEESLKPESVGEETVAAAVTQVHVRDTSAPQQTTASPVATAAXXESSPPSMAAGAAPPSESQVAVPADADXXXXXXXXXXXXXXXXXXPAALAGLDNGSADRTPAAKVPPSPVAASTPVESTEKAAAEXXXXXXXXXXXXXXXXXXXXXXMTYASLAKSWATVAADSG 331          
BLAST of mRNA_Ecto-sp13_S_contig1951.6278.1 vs. uniprot
Match: A0A835Z9L7_9STRA (NTF2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9L7_9STRA)

HSP 1 Score: 194 bits (492), Expect = 1.850e-53
Identity = 96/152 (63.16%), Postives = 114/152 (75.00%), Query Frame = 1
Query:   13 AMSTRRGAPAPAVVGSHFVKQYYGEVLSKKPVELHRFYKDESTFCHASGTKEEEPVSGLEDIKAKIKHLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITIANTDPRQFCQTFFLARQHQDNDRHNYFVRNDIFRFLDVLPEVVQAALKA 468
            A ST    P+ AVVG HF+KQYYG+VL  KP EL RFY ++STFCHA G+ +E+PV+GLE+IKAKI  LGL  ATVDL CGSVDAQPS   G++LMVTGSI +     RQF QTFFLA Q Q N RHNY V NDIFR LD +P+V++AA+ A
Sbjct:    2 ASSTVDTQPSAAVVGGHFIKQYYGQVLPNKPTELFRFYHEKSTFCHADGSSQEDPVTGLENIKAKILSLGLADATVDLDCGSVDAQPSVDDGIILMVTGSIKLQGQRLRQFAQTFFLALQLQKNGRHNYVVMNDIFRLLDTIPDVLKAAVDA 153          
BLAST of mRNA_Ecto-sp13_S_contig1951.6278.1 vs. uniprot
Match: A0A835YRG6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRG6_9STRA)

HSP 1 Score: 191 bits (485), Expect = 1.310e-49
Identity = 91/142 (64.08%), Postives = 111/142 (78.17%), Query Frame = 1
Query:   49 VVGSHFVKQYYGEVLSKKPVELHRFYKDESTFCHASGTKEEEPVSGLEDIKAKIKHLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITIANTDPRQFCQTFFLARQHQDNDRHNYFVRNDIFRFLDVLPEVVQAAL-KAR 471
            VVG HF+K +YGEVL +KP+ELHRFY ++STFCHA G K+E+PV GLE+IK KI+ LGL  ATVDL CGSVD Q S+ G +LLMVTG+IT+    PRQF QTF LA   Q + RHN+FV ND+FR LD +PEV++AAL KAR
Sbjct:   11 VVGHHFIKSFYGEVLPRKPLELHRFYSEQSTFCHAEGNKQEQPVMGLENIKEKIRGLGLADATVDLDCGSVDIQASQNGSILLMVTGAITLRGQAPRQFAQTFLLATHRQMDGRHNFFVLNDVFRLLDTIPEVLEAALAKAR 152          
BLAST of mRNA_Ecto-sp13_S_contig1951.6278.1 vs. uniprot
Match: A0A7S2GVT4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GVT4_9STRA)

HSP 1 Score: 140 bits (352), Expect = 4.020e-32
Identity = 74/153 (48.37%), Postives = 98/153 (64.05%), Query Frame = 1
Query:   19 STRRGAPAPAVVGSHFVKQYYGEVLSKKPVELHRFYKDESTFCHASGTKEEEPVSGLEDIKAKIKHLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITIANTDPRQFCQTFFLARQHQDNDRHN--YFVRNDIFRFLDVLPEVVQAALKAR 471
            +TRRG P+PAVVG  F+K+YY ++L+  P  ++RFY+D+S      GT  E+PV G+E IKAKI   G   A  +L  GS+DAQPS+ GGVLLMVTG+IT  N  PRQF Q+FFLA Q      +   YFV ND FR +   P V+ + +  +
Sbjct:    7 ATRRGRPSPAVVGKQFIKRYY-DLLTTDPSLMYRFYQDQSAMVCGEGTHSEDPVMGMEQIKAKIAERGCLNAIFNLEHGSIDAQPSKDGGVLLMVTGTITKKNAPPRQFVQSFFLAEQQNSIKTYPPAYFVLNDTFRIVTPPPNVINSYMSVK 158          
BLAST of mRNA_Ecto-sp13_S_contig1951.6278.1 vs. uniprot
Match: A0A485LI37_9STRA (Aste57867_20882 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LI37_9STRA)

HSP 1 Score: 131 bits (330), Expect = 4.070e-29
Identity = 70/134 (52.24%), Postives = 88/134 (65.67%), Query Frame = 1
Query:   34 APAPAVVGSHFVKQYYGEVLSKKPVELHRFYKDESTFCHASGTKEEEPVSGLEDIKAKIKHLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITIANTDPRQFCQTFFLARQHQDNDRHNYFVRNDIFRFLDV 435
            AP P  VG+ FVKQYY  +L++ P +LHRFYKDESTF H SG++ EE VSG   I + I      GA V L  GS+D Q S+ GGV+++VTG IT+ N+ P  F QTFFLA QH     + YFV ND+ RFL +
Sbjct:    8 APHPTTVGNTFVKQYYS-LLTESPDKLHRFYKDESTFSHGSGSQLEESVSGQASINSTILKKNYYGAVVQLDHGSIDCQASQAGGVVVLVTGVITLQNSAPAHFVQTFFLAVQH-----NGYFVLNDVLRFLHI 135          
BLAST of mRNA_Ecto-sp13_S_contig1951.6278.1 vs. uniprot
Match: A0A7S2DLV2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DLV2_9STRA)

HSP 1 Score: 130 bits (328), Expect = 5.460e-29
Identity = 70/154 (45.45%), Postives = 102/154 (66.23%), Query Frame = 1
Query:   16 MSTRRGAPAPAVVGSHFVKQYYGEVLSKKPVELHRFYKDESTFCHASGTKEEEPVSGLEDIKAKI----KHLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITIA-NTDPRQFCQTFFLARQHQDNDRHNYFVRNDIFRFLDVLPEVVQAAL 462
            M  ++G P+P  V   FVKQYY ++  K+P +L RFYK+ES F H++G +E + ++G+E+IKA I         G   VDL CGSVDAQPS+ GGV+L+VTG++T   +   R F Q F+LA Q  + ++ +YFV ND FR+LD+ P ++ AA+
Sbjct:    1 MPPKKGHPSPRQVAQSFVKQYY-DMYMKQPKDLFRFYKEESHFLHSAGNQERKSITGIEEIKAAIASGYSSNVAGQVQVDLECGSVDAQPSKDGGVILIVTGAMTSKEDKHSRMFVQNFYLAPQ--ETEQASYFVLNDAFRYLDISPSIMDAAM 151          
BLAST of mRNA_Ecto-sp13_S_contig1951.6278.1 vs. uniprot
Match: A0A6G0XNH0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XNH0_9STRA)

HSP 1 Score: 129 bits (324), Expect = 2.000e-28
Identity = 70/145 (48.28%), Postives = 90/145 (62.07%), Query Frame = 1
Query:   34 APAPAVVGSHFVKQYYGEVLSKKPVELHRFYKDESTFCHASGTKEEEPVSGLEDIKAKIKHLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITIANTDPRQFCQTFFLARQHQDNDRHNYFVRNDIFRFLDVLPEVVQAALKA 468
            AP P  VG+ FVKQYY  +L++ P  LHRFYKDESTF H SG++ EE VSG   I + I      GA V L  GS+D Q S+ GGV+++VTG IT+ N+ P  F QTFFLA Q +      +FV ND+ RFL++  +      KA
Sbjct:    8 APHPTTVGNAFVKQYYS-LLTESPETLHRFYKDESTFSHGSGSQPEESVSGQASINSTILKKRYSGAVVQLDHGSIDCQASQAGGVVVLVTGVITLQNSAPTHFVQTFFLAVQEK-----GFFVLNDVLRFLNIPTKPASPVKKA 146          
BLAST of mRNA_Ecto-sp13_S_contig1951.6278.1 vs. uniprot
Match: A0A0W8CRK0_PHYNI (NTF2 domain-containing protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8CRK0_PHYNI)

HSP 1 Score: 125 bits (315), Expect = 2.960e-28
Identity = 72/155 (46.45%), Postives = 100/155 (64.52%), Query Frame = 1
Query:   37 PAPAVVGSHFVKQYYGEVLSKKPVELHRFYKDESTFCHASGTKEEEPVSGLEDIKAKIKHLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITIANTD-PRQFCQTFFLARQHQDNDRHNYFVRNDIFRFLDVLPEV--VQAALKARDEEDGST 492
            P+P+ VG+ F++QYY   L+K+P  LHRFYK ES +CH  G+  EEP++G   I  +I   G  GA VDL  GS+D Q S GGGVL++VTG +T+ ++  P+ F QTFFLA Q +      YFV ND  RFL+ LP    V+ A + +++E+G T
Sbjct:   50 PSPSTVGNTFMRQYY-HFLAKEPQSLHRFYKAESRWCHGLGSHMEEPIAGQRAINDQILKRGYAGARVDLDAGSIDCQNSHGGGVLVLVTGVMTLRSSPTPKPFVQTFFLAVQPK-----GYFVLNDCLRFLE-LPGAAPVEVAPEVKEKENGKT 197          
BLAST of mRNA_Ecto-sp13_S_contig1951.6278.1 vs. uniprot
Match: A0A7S3Y115_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y115_HETAK)

HSP 1 Score: 119 bits (297), Expect = 9.910e-28
Identity = 70/139 (50.36%), Postives = 90/139 (64.75%), Query Frame = 1
Query:   34 APAPAVVGSHFVKQYYGEVLSKKPVELHRFYKDESTFCHASGTKEEEPVSGLEDIKAKIKHLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSITIAN-TDPRQ-FCQTFFLA-----RQHQDNDRHNYFVRNDIFRFL 429
            +P P+ V + FV  YY  VLSKKP EL RFYK+ES+F   +  +  EPV+G+E IK KI  LGL GA V++G GSVDAQ S  GGV+++VTG+I +A    P Q F QTFFLA     +Q +     +YFV ND  RF+
Sbjct:    5 SPPPSTVATSFVAHYY-RVLSKKPAELFRFYKEESSFTFGAPGEAAEPVTGIEAIKTKITGLGLEGAKVEVGQGSVDAQASRDGGVVMLVTGTIALATGQQPAQAFAQTFFLAPQVVVQQGRTAPVPSYFVLNDTLRFV 142          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1951.6278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJI2_ECTSI6.360e-29192.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L110_9PHAE1.800e-15888.62NTF2 domain-containing protein (Fragment) n=1 Tax=... [more]
A0A835Z9L7_9STRA1.850e-5363.16NTF2 domain-containing protein (Fragment) n=1 Tax=... [more]
A0A835YRG6_9STRA1.310e-4964.08Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2GVT4_9STRA4.020e-3248.37Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A485LI37_9STRA4.070e-2952.24Aste57867_20882 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S2DLV2_9STRA5.460e-2945.45Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6G0XNH0_9STRA2.000e-2848.28Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A0W8CRK0_PHYNI2.960e-2846.45NTF2 domain-containing protein n=1 Tax=Phytophthor... [more]
A0A7S3Y115_HETAK9.910e-2850.36Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1951contigEcto-sp13_S_contig1951:892..8707 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score816.6
Seed ortholog evalue7.3e-234
Seed eggNOG ortholog2880.D7FJI2
Preferred nameG3BP2
Model size1755
KEGG koko:K14050,ko:K14328,ko:K17265,ko:K19718
KEGG Pathwayko03013,ko03015,ko04139,map03013,map03015,map04139
KEGG ModuleM00430
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000375,GO:0000377,GO:0000398,GO:0000932,GO:0001654,GO:0001736,GO:0001738,GO:0001745,GO:0001751,GO:0001752,GO:0001754,GO:0002009,GO:0002064,GO:0002065,GO:0002066,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003678,GO:0003723,GO:0003724,GO:0003729,GO:0003824,GO:0004003,GO:0004004,GO:0004386,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006355,GO:0006396,GO:0006397,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006914,GO:0006996,GO:0007154,GO:0007163,GO:0007164,GO:0007165,GO:0007253,GO:0007264,GO:0007265,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007389,GO:0007399,GO:0007423,GO:0008026,GO:0008069,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009056,GO:0009653,GO:0009798,GO:0009887,GO:0009888,GO:0009889,GO:0009893,GO:0009950,GO:0009953,GO:0009966,GO:0009968,GO:0009987,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010604,GO:0010628,GO:0010646,GO:0010648,GO:0016043,GO:0016070,GO:0016071,GO:0016236,GO:0016318,GO:0016333,GO:0016334,GO:0016462,GO:0016579,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019538,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023052,GO:0023057,GO:0030111,GO:0030154,GO:0030159,GO:0030178,GO:0030182,GO:0030707,GO:0030855,GO:0031323,GO:0031326,GO:0032088,GO:0032386,GO:0032392,GO:0032501,GO:0032502,GO:0032504,GO:0032508,GO:0032879,GO:0032947,GO:0032991,GO:0033036,GO:0034063,GO:0034517,GO:0034622,GO:0034641,GO:0035556,GO:0035770,GO:0035973,GO:0036211,GO:0036464,GO:0040008,GO:0042067,GO:0042623,GO:0042706,GO:0042994,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043433,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0044877,GO:0045165,GO:0045185,GO:0045570,GO:0045571,GO:0045926,GO:0046483,GO:0046530,GO:0046552,GO:0046620,GO:0046621,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048592,GO:0048609,GO:0048638,GO:0048640,GO:0048663,GO:0048699,GO:0048729,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051090,GO:0051093,GO:0051171,GO:0051179,GO:0051220,GO:0051235,GO:0051239,GO:0051241,GO:0051252,GO:0051276,GO:0051704,GO:0051716,GO:0060255,GO:0060341,GO:0060429,GO:0060627,GO:0060628,GO:0060828,GO:0061912,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070035,GO:0070646,GO:0070647,GO:0070925,GO:0071103,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090090,GO:0090304,GO:0090596,GO:0097159,GO:0140097,GO:0140098,GO:1901360,GO:1901363,GO:1901564,GO:1903506,GO:1905538,GO:1990861,GO:1990904,GO:2000026,GO:2000112,GO:2000156,GO:2001141
Exons12
EggNOG free text desc.ras GTPase-activating protein-binding protein
EggNOG OGsKOG0116@1,KOG0116@2759
Ec32 ortholog descriptionNuclear transport factor 2
Ec32 orthologEc-04_006210.1
EC2.5.1.60,3.6.4.12,3.6.4.13
Cds size1740
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01006,ko03019,ko04131,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1951.6278.1prot_Ecto-sp13_S_contig1951.6278.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1951 907..8707 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462989.0833848-UTR-Ecto-sp13_S_contig1951:891..9061681462989.0833848-UTR-Ecto-sp13_S_contig1951:891..906Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1951 892..906 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462989.095553-CDS-Ecto-sp13_S_contig1951:906..9661681462989.095553-CDS-Ecto-sp13_S_contig1951:906..966Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1951 907..966 +
1681462989.1042185-CDS-Ecto-sp13_S_contig1951:2141..22371681462989.1042185-CDS-Ecto-sp13_S_contig1951:2141..2237Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1951 2142..2237 +
1681462989.1128132-CDS-Ecto-sp13_S_contig1951:2599..27111681462989.1128132-CDS-Ecto-sp13_S_contig1951:2599..2711Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1951 2600..2711 +
1681462989.1311073-CDS-Ecto-sp13_S_contig1951:3171..33411681462989.1311073-CDS-Ecto-sp13_S_contig1951:3171..3341Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1951 3172..3341 +
1681462989.1500263-CDS-Ecto-sp13_S_contig1951:3759..39151681462989.1500263-CDS-Ecto-sp13_S_contig1951:3759..3915Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1951 3760..3915 +
1681462989.1616864-CDS-Ecto-sp13_S_contig1951:4706..49251681462989.1616864-CDS-Ecto-sp13_S_contig1951:4706..4925Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1951 4707..4925 +
1681462989.172851-CDS-Ecto-sp13_S_contig1951:5281..56861681462989.172851-CDS-Ecto-sp13_S_contig1951:5281..5686Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1951 5282..5686 +
1681462989.1807332-CDS-Ecto-sp13_S_contig1951:6307..64421681462989.1807332-CDS-Ecto-sp13_S_contig1951:6307..6442Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1951 6308..6442 +
1681462989.1888416-CDS-Ecto-sp13_S_contig1951:6821..69611681462989.1888416-CDS-Ecto-sp13_S_contig1951:6821..6961Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1951 6822..6961 +
1681462989.1982784-CDS-Ecto-sp13_S_contig1951:7381..74641681462989.1982784-CDS-Ecto-sp13_S_contig1951:7381..7464Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1951 7382..7464 +
1681462989.2075448-CDS-Ecto-sp13_S_contig1951:8187..82541681462989.2075448-CDS-Ecto-sp13_S_contig1951:8187..8254Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1951 8188..8254 +
1681462989.2168565-CDS-Ecto-sp13_S_contig1951:8610..87071681462989.2168565-CDS-Ecto-sp13_S_contig1951:8610..8707Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1951 8611..8707 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1951.6278.1

>prot_Ecto-sp13_S_contig1951.6278.1 ID=prot_Ecto-sp13_S_contig1951.6278.1|Name=mRNA_Ecto-sp13_S_contig1951.6278.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=580bp
MSTRRGAPAPAVVGSHFVKQYYGEVLSKKPVELHRFYKDESTFCHASGTK
EEEPVSGLEDIKAKIKHLGLGGATVDLGCGSVDAQPSEGGGVLLMVTGSI
TIANTDPRQFCQTFFLARQHQDNDRHNYFVRNDIFRFLDVLPEVVQAALK
ARDEEDGSTARSAPAPAEESSKPESVGEETVAAAVTQVKVQDTSAPQQTT
DSPVATAAAPESSPPSMAAGAAPPSESQVAASTDADAGAATAAATAAATV
TAPAASAGLDNGSTEKTPASKVPPSPVAASTPAESTETSAAEVAPPASPL
PPAAPAAPPAPMTYASLAKSWATVAADSGSGVGAAAAVGAPASAASPSGN
GNGITTSNGGWGAPDPALAAAGAGAGGAGLTIEQPVSQPGPGVVQHGSRP
SSATGKGQKGPGAYIPHHASPAVAASAAAAREAAAAGNGEIMPATSLFVR
KVDMTIDRDEMIAHFSAYGEVTGISMNPTRGYAFIDYRTNECVQIALSTK
EHYVNRKLLVVEERHSPMVQRNSRGEHGGGRGGRNGGRGRVSSGRDGRDG
DRRPTGRGGRDRPDGPKDGGYRARGRAEG*
back to top

mRNA from alignment at Ecto-sp13_S_contig1951:892..8707+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1951.6278.1 ID=mRNA_Ecto-sp13_S_contig1951.6278.1|Name=mRNA_Ecto-sp13_S_contig1951.6278.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7816bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1951:892..8707+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTAGTGTGAGGAGCGATGTCCACCAGGAGGGGGGCGCCGGCGCCGGCCGT GGTTGGGAGCCACTTTGTCAAGCAGGTAGAAAGGTGGTGGGTCCCGTCGC AGTTATCGCGTGAAGACTTCCATGCGGGTAGGTATTACAAGAATCGAAAG CTTTGGTGGGAAGGGAGCCACTGGAGTTGGAACGGGGTGGGTGAATGGAG TGTCACAAATGGTATGGAAGTTTTTTTTCATACCCTTACATAAAGCAGCG GGGTTCTGGATGTGGTGCGACGTCGTTGCCAGTCATGGACCCAATCTTCC CCTTTGTTATTTCTCTCCATTTATGATGTACGGAGTCATGAGCGTGTTTA GTGCTCGAAATTATTCTCCTATTTCCCACCTCGATCTTGTGAGCTGTGAC GAACGCAATCCGATAAACAGGAAGTGCCGTATGACTGACCAAAAGGGTCA ACCGTGCTTAGACAAGGATCACCCTGAGCTCTCGAGTGTGGCATAACAGA AGCACTGCTGTTGCGGTTTTGTAGTTTTGTGTCACTTGGTCCCCTTCCCC CACCACGGGTTTTTCCACCGCAATGATACTGCGGTGCCGCCACCAAGCGC TCAGATCGTTTGCGTGTGTTTGCATGTGGTGGCGAGCGTGATGCCATTCT TGCACAATGCATGCACAAACTGCCATTTTTATTTTCACTTGAACGTCATA CCCTCTGATACCGATTTTGTTGATTCCGTTGAGAACGAACCAGCGTTCCG TGGATAATACTGAAGTGAAAGTTAAGGTTGTCTGCAGCGACAGCCAAGTT CGCCACTCATCGTTATGCCTTGCTGTTGGTGTCATGGGTGAAGTGTTTGG GCGGAGATGCTCCAAGCGAGCAGGTTTAGATACCCTTGCTCATTGTCTGT ATGCAGTTCTTCTTGTTTTTCGGGCAGCAACTCGACTTCCGCCGCCCTCT GTCATGCAGCGAAACAAAGTTTGCAAAATGCTGCCCCGGGTCGTTTCTGA CCGCCGTCGCCCTACTTTGGCAGGTGCTATGACGGATGTAATGGGCTTGG GTTTGGTCGGTGTATCTTACGTGGAAGCTATTTTGAACATCCACCAACAC TGTAGCCTGACCCCAAGTCGTACAGCAGTGTAGATGTACTTCGTATACCC CTACCTCCCTCAATGCGATCCACGATATTGGTGGTCATCGTCCTCCTTGG CGTCATGTTGATTGCTTTGTGTCGTGTTGGTGGCCTGTTGCCTGCTGCAG TACTACGGCGAGGTTTTGTCCAAGAAGCCGGTGGAGTTGCACCGCTTCTA CAAGGACGAGAGCACGTTCTGCCACGCTTCTGGCACCAAGGAAGAGGTTA GTTAGCGGTGGTTGTGGCGGGCGTGGTTTAGGCCTGGTGTGTCGACAAGG GAGAGGCAGCGCGATGCCAGTATTGCACCACTGCTGTGAGGTGAAATGCA CAATGGAGCGGCTAGCCTTCTCGTGTTTTCTTGTCTACCACTACCGTGGT GTCGCGCAAATCCCTCTGCAACTTAGTATAGAGTGAAAAAAGGCAGCAAA GCGGGTGATTATTCCTTGGTCGTTGCGCTATTCGATTACATGTCCAGGCC TCCCTCCTCACCAGTGAGCAGATCTCGTTGTATGCGACATGTCGTACGAT AGGAGAACCCAGCACCTCATCATAATCACGGCCGCTGTTTATTGTTGGTG TTCACCAGGAGCCCGTGTCTGGCCTGGAGGATATCAAGGCTAAGATTAAG CACCTCGGCCTTGGCGGCGCGACGGTTGATCTCGGTTGCGGGTCCGTCGA TGCTCAGCCTTCCGAAGGAGGTGAGTTTGCCCAGGAGATCATGAGATGAT ACACAACTGAACTGAATCAACGCGCTTAGAATCAGCCTAGAAGGAGGTAT GGTACGTACTGTAGTTTTCACGGGAGTGTGCTGTACTGGTCCGTCGACCA GCAACTGCCAATGGCAGCCCATCCGCCTTCGAGGCGCTTGGCGGCACGTT GATTGTATCTCCCGAAATTCTTGATGACAGTGGTCCCGGCGCCGAAGGGG CATTGCCGGAGGTCTTGTTTGATGACGTTGCGACAAGGATTCATTCATGG TGACATGGAAGTAGAAGATACTGGTGCCTGCCCTCGCCGCTTTGCTGATT TTCCCTCACAAGATTCTTGGGCAGTTTGTGAAGTGTCTCCTCAATGATGT AGCAGCATGCCGCGTGCCGTTGACAAATTGATGAAATTCTCCATCGGACC GAAACTTGAATGGGACGAATGATTGGTCAGGCGGAGTGCTCCTGATGGTG ACGGGTTCCATCACCATCGCCAACACGGACCCGCGGCAGTTCTGCCAGAC GTTTTTCCTGGCTAGACAGCACCAGGACAACGACCGCCACAACTACTTCG TCCGCAACGACATCTTCCGGTTTCTTGACGTCCTTCCGGAGGTTGTTCAG GTACAGTATAGACGTTGCCGTCCGTGTCAGGCGTAGGTGTTTACGTTGCG TGTGTTCACGATCGCAGTTCTTGAATACTGTTCAGGTTGTAGTCGCTTTC TAGATTTCATGCCAGCTCCCGCGACGACGATAGATGTTTGATTGTTTTAG TTCATGACATTCGAGGGTGACAGCAGTCTGCACTATCAAATTTTCCCGTC TCCCTCTTGCCCTCACACGTGTCAGTCAACGTTTCCCAGCCGGTTGCAAC CCTCCTGCTTTGTCAGTTTATATCCCGATATCTCCGTATCATTAGCTGCT ATAACAAGCCCTTCCGTGTCAACGCGACCCAGCACCGCCCCTTGTCGGGG TGAAAATCGAAGATCGATTCTCCCGTGCATTGTTGTGACATTAACCGATG TGTTTTGTTTTCTGTTAGGCCGCCCTCAAGGCCCGCGACGAGGAAGACGG CTCTACCGCTCGCTCTGCTCCGGCCCCCGCTGAGGAATCATCGAAGCCAG AGTCTGTCGGCGAGGAGACGGTGGCGGCCGCGGTCACGCAGGTGAAGGTG CAGGACACATCGGCTCCTCAGCAGGTTCGCGTTTAAGTATATAGGCATGC ATACCACTGCTGTACACGTGCTTGCCCTCATTGCGGGCAAGGAGAATGTG TGGCCGTAGGTGTTGTGGGTGTTTTGTTTTGTGCCGGTGAGGTGGTCATC TGCACGCCAGCTAGTTGATTGTACTCTCCACGCGAAGGTTTTGGTGAGTG TCAGTACATGTATCGGTCCGTTGTGCTTTGTTGTCCTAGCCGACTTCCGA CTGACTTGCCGTGTGCATATGTGTGGGGGCGGATGGTGTTGAGCAGCCGG ACAGTGCGACCTGTGCCATGCGCAGACTCGTCAAGTCTTCATCGGCGATG AGCATGAACCTTGTTCATGCGCACGCCGCTGTTTCCCGTTCTTGAAATCC ATGAAATACGGCCCCTAGTTACACGTGTCTCGTAAATGAACATCGCCCGT TTCCTGGAGTAATGGCTCAGCAGGATGTTCACGACTGCTTGACCGGCTCG ATGGCACTACAATGTGTTCTCTTCGCGTTTATTTAGTACACAGGGGGGGT GACTCATGGTGATGACAACCTCAAGAACGATGCGGCAGGCCCGTGGGTCG GCCGCAACACGTAGAAGTAGATGTGTTCAACGAGGAAGAGTGGCTTTGCA TACGTGCCTGCTTGACCCACAGCAGTTGAAGGGAAGGGAGTTGGACAAAA ACTCTCGTCGCTCTCCGACAACACGGATACAACAGCGGTTGGGTGACGCT GACGTTCTGGCGTGTACTTTCCTCCCTCCGTTTGTGTCCGTCCACCTCTT CTCTCCCCTCGGCAGACTACCGATTCCCCTGTGGCAACGGCGGCTGCGCC CGAATCTTCCCCGCCTTCGATGGCGGCGGGTGCCGCTCCCCCGTCCGAGT CTCAGGTTGCGGCTTCCACTGATGCTGACGCCGGCGCCGCCACCGCTGCT GCGACCGCCGCTGCGACCGTGACCGCGCCTGCCGCGTCGGCGGGCTTGGA CAACGGCTCGACTGAGAAGACTCCAGCGTCAAAGGTGAATATCCGTGGCT TGCTGGTTGGTCTTGGTTTCGGAACTGGAGGTGTTGGTTGTATTGGTGTA CTTGTGTACTACTCTATTCCATGCGGCGATCCGCAGTTTTCAATTTGTGC GTGTTAGCGAGGGTTTGTTACTTGTGCGTTCCCCATGGTGTAGGGGTTTG GATGTGTTGCGCTGTCTCCGGCTCATTCATATCCTGCCTAGGCAGCTTGG CTAGCGCCTAATTACGCCACTCCACGCTTGCATCGTGTACTACGTCAACG GGGGGCGTTACTATGACTGCCCCTATGTGAACCCTGAGTCTTGACCTTCC GAACCCCGCCCTTCCTTCCCCCCCACCTGCACCTGTCAAGGTGCCCCCCT CCCCGGTCGCCGCCAGCACCCCCGCGGAGTCCACCGAGACGTCAGCGGCG GAGGTGGCCCCTCCTGCCTCCCCACTGCCGCCTGCGGCACCGGCTGCGCC CCCGGCCCCCATGACCTACGCGTCTCTCGCCAAGTCTTGGGCCACGGTGG CGGCGGACAGCGGCAGCGGAGTGGGGGCGGCTGCGGCGGTGGGCGCCCCG GCTTCTGCCGCGTCGCCCAGCGGCAACGGTAACGGGATCACCACTAGTAA CGGCGGGTGGGGTGCTCCGGATCCGGCGCTGGCAGCGGCGGGGGCGGGGG CGGGCGGGGCGGGTTTGACGATCGAGCAGCCCGTCAGTCAGCCCGGGCCC GGCGTTGTGCAGCACGGCTCTCGGCCGTCCTCTGCGACCGGAAAGGTCAG TTGGTCGTGCCTGTGCTGCCGATGCTGTCACATGTTGTACCTATGCGGTC TATCGAGCTAGTACATACTGCTCTCGCTTTTGTGTAGTACCTTACACTGC ACTGGCTGCTGCGTAACGTCGCGTTTCCGCGACAAGAGAGGAAAGTGGTT TAACTTAGCAAACGCACCGTCAGGACCGAGACTAGTGACGTGGATTGACC TGAGGGCCACGCTCACGGGGAAGGGGAGCGGTGGGAGTTTGGATTAGTAG TTTCATGTTCCCCGAGCGCGTTTTCGTTATTGGTGAACGCCGATGGGTCT GCTGTGCTGCGGGCCATATGTATGTGTTGGCACTTGTGTTGCGCTCAGGG GTGCATCACAGTTGGTTGAGGTTTTGGGTTTGGGAATAAACGAAACGTAG ACCAAGTAGCTAGTTCTGGAACCGATCTACGAATATGTACCTGAAGTTTC ATTTCCGCTCTTTACTCCATCGTCTTGACTGCTCAAATGTTTCGTCCCTA CGTCACGCTTGCAGCAGCCAGCCAGCTATCCTGACCGGCCACCTTTCCCT GCCTTTGATCTTGGACCTGAGTTTGCTCGTTAATCGAATGCACGCTGTTC GTTCAACGATTGCCAGGGCCAGAAGGGACCTGGAGCGTACATCCCCCACC ACGCCTCCCCCGCGGTGGCCGCATCTGCCGCCGCTGCTCGTGAGGCCGCT GCCGCTGGCAACGGGGAAATCATGCCTGCCACGTCGCTCTTCGTGCGCAA GGTAATTTATGGAGGGAGGGAGGGAGGGGGTGTGACGCACCCGACAAGAT GCGATTCAGTCCGCTGTGCGTCAAGTTGATGTTGCGTGGCACTAAATCAG CAGCAACGCTAATATTCTCTTGACCGTCTGTGCGACAACCTGAAGCACGT AACTTCAAATTGTAGGATTTCTACGAGCCGACGACATGCGTCTATCGTAT TCACGTTGTCTCGCGATGATGACGTACACAGGTGACCTTGACACGTTCCA ATTGTTGGTGACTATCACCTTCTCATGGACCCACGACGATAGCAAAGGCA TCCATGACTCGAGGAACATCTCATGAGTCCAACCCTCTTTTGTGTGGCTG GTTGATTGTTATTGGGGGATGCGCTTTTAGGTGGACATGACGATCGACAG GGACGAAATGATCGCTCACTTCTCGGCTTACGGCGAGGTGACGGGCATCA GCATGAACCCTACCCGCGGATACGCCTTCATCGACTATCGAACCAATGAA TGCGTGCAGATCGCGCTCAGGTATGGTCCTTATACGCACTCCAATGCGCG CAATTGACCAGCCTGCTCACGTTATGCTTGTTGTTTAAAGCGTGAGTGCT GACAATGTTCCGTCAGCATGCCAAGACGTCAATGTACCCTGTTCTACGTG CTTGTTGCGAGCTCCTAGAGAGGCGTAATACGTACAAAAGCGTTGCTTTG TTTGGAGAGGAGGGGGTTTTGATGCTTGCATCCATCCGTCTGTTTGGGGT GCGTCGCGTGTAGAAGCTTAGGAGCTCGTCAGCAGCTGTCTATCCTGCGT GCTGCATGGCTTTGACCTTGTCGTGTTTTTTGGTGCTGTCTCTTTTTCGT CTGTAATCTTTTGCCTCGCTTCCCCCCCCCCCCCGCTAAAAAATGCTGCC ACCGATCTCCCTATGGGTTGCTGCCGTTTATGTGTCACAGCACCAAGGAG CACTACGTCAACCGCAAGCTACTAGTTGTTGAGGAGCGCCACTCGCCCAT GGTCCAGCGCAACTCGAGGGGAGGTAAGCAAAGACGGCCGGCCCTCCTTG CCTCTGCCTCTTCTGTCTGTCGCTGTCACTGTCACTGTCACTGTCACCGT CACCGTCACCTGTCGCAACTGTTTCTTGTCGGATGAGGTAGAAAAGGGCC GGCGAGCTAACTGTACTTGTAATAGCGTCGAACGAGAGAACCAGGAAGGT ATCCAGCAAGCCCGGGAACTTGATCTGCTCGTGTTTGAACATCCCGACAC CTTTTTGCCTAAAGGTCTAAACCGATGCATGTACTTCTACAATGTACCGT ACAGGACACAAGATAGCACCCGTCCTGGACCAATTTTTTCAAAGCTCGAT AGCGCCACGACGAAGAGGATGCGTAAATGAGACAACACATTTTCGGAAAG CTCTCGACGAGACAGCTTCGACGCCACCGTTTTCGGCGCTGTGACTCTTT CTGTTGTTGAGAAATCGAGATTTGAAAATCGGTCTGGAGGGTGTTTATTT TGTGTCCTTTTGCAGTTGCTGCTTTTCTCTGTCCCTCGAGTGGTATACTT GTTTACATGTTCGAGGCAATGCCCGGCCTGCACAGAGCCATGGGTATGTT TTCATTTTGCATCCTTGACAAGGCAAATTTATACTTTTTTTTTCAACTTT GTGGTGTTGTCCTTTTTGACCGCGTTTTCGTCTTGGTCTTGTGACACATG CTCCCTCTGTCATACTGTTGTGTTGTTTCACTACTGTTGAACGCAGAACA TGGCGGCGGCAGGGGCGGTCGCAACGGGGGCCGCGGGCGTGTGTCGAGCG GCAGGGACGGCAGGTAATTTTGTTTTCCGCTGGAATGGGACTGATTCTCG AGAGGACAGTGGTTGGGTGGGTAAAATTTGTTGACGCTGCGATGATTTGC GAAGAATTACGACGGCAGTGATGGAAACAGGCGCACTGCTTTCAGTCGGT CGCTCCGTCTGTGTTGTCATTTTCGGCACAAGAACACAGCGTTCGTGTCC GTCGCGCTTGGTGCATTGATTCATGCTATGGGTGCTTTACGCAACCAGGT AAGCAAGTAACGTGCCTCGCTCATGCATCCGTCTTCCTTCTGGACCTCGT GTTCTGATGACACCTCGTCTTCTGGAAATCGTGCACGTTATTTTTTTTCT TCTCCGACGATGAATCAAGGGACGGGGACCGGCGTCCCACGGGGAGGGGG GGGCGCGATCGTCCTGATGGCCCCAAGGACGGCGGCTACCGGGCTAGAGG ACGGGCAGAGGGCTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1951:892..8707+

>mRNA_Ecto-sp13_S_contig1951.6278.1 ID=mRNA_Ecto-sp13_S_contig1951.6278.1|Name=mRNA_Ecto-sp13_S_contig1951.6278.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1740bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1951:892..8707+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCACCAGGAGGGGGGCGCCGGCGCCGGCCGTGGTTGGGAGCCACTT
TGTCAAGCAGTACTACGGCGAGGTTTTGTCCAAGAAGCCGGTGGAGTTGC
ACCGCTTCTACAAGGACGAGAGCACGTTCTGCCACGCTTCTGGCACCAAG
GAAGAGGAGCCCGTGTCTGGCCTGGAGGATATCAAGGCTAAGATTAAGCA
CCTCGGCCTTGGCGGCGCGACGGTTGATCTCGGTTGCGGGTCCGTCGATG
CTCAGCCTTCCGAAGGAGGCGGAGTGCTCCTGATGGTGACGGGTTCCATC
ACCATCGCCAACACGGACCCGCGGCAGTTCTGCCAGACGTTTTTCCTGGC
TAGACAGCACCAGGACAACGACCGCCACAACTACTTCGTCCGCAACGACA
TCTTCCGGTTTCTTGACGTCCTTCCGGAGGTTGTTCAGGCCGCCCTCAAG
GCCCGCGACGAGGAAGACGGCTCTACCGCTCGCTCTGCTCCGGCCCCCGC
TGAGGAATCATCGAAGCCAGAGTCTGTCGGCGAGGAGACGGTGGCGGCCG
CGGTCACGCAGGTGAAGGTGCAGGACACATCGGCTCCTCAGCAGACTACC
GATTCCCCTGTGGCAACGGCGGCTGCGCCCGAATCTTCCCCGCCTTCGAT
GGCGGCGGGTGCCGCTCCCCCGTCCGAGTCTCAGGTTGCGGCTTCCACTG
ATGCTGACGCCGGCGCCGCCACCGCTGCTGCGACCGCCGCTGCGACCGTG
ACCGCGCCTGCCGCGTCGGCGGGCTTGGACAACGGCTCGACTGAGAAGAC
TCCAGCGTCAAAGGTGCCCCCCTCCCCGGTCGCCGCCAGCACCCCCGCGG
AGTCCACCGAGACGTCAGCGGCGGAGGTGGCCCCTCCTGCCTCCCCACTG
CCGCCTGCGGCACCGGCTGCGCCCCCGGCCCCCATGACCTACGCGTCTCT
CGCCAAGTCTTGGGCCACGGTGGCGGCGGACAGCGGCAGCGGAGTGGGGG
CGGCTGCGGCGGTGGGCGCCCCGGCTTCTGCCGCGTCGCCCAGCGGCAAC
GGTAACGGGATCACCACTAGTAACGGCGGGTGGGGTGCTCCGGATCCGGC
GCTGGCAGCGGCGGGGGCGGGGGCGGGCGGGGCGGGTTTGACGATCGAGC
AGCCCGTCAGTCAGCCCGGGCCCGGCGTTGTGCAGCACGGCTCTCGGCCG
TCCTCTGCGACCGGAAAGGGCCAGAAGGGACCTGGAGCGTACATCCCCCA
CCACGCCTCCCCCGCGGTGGCCGCATCTGCCGCCGCTGCTCGTGAGGCCG
CTGCCGCTGGCAACGGGGAAATCATGCCTGCCACGTCGCTCTTCGTGCGC
AAGGTGGACATGACGATCGACAGGGACGAAATGATCGCTCACTTCTCGGC
TTACGGCGAGGTGACGGGCATCAGCATGAACCCTACCCGCGGATACGCCT
TCATCGACTATCGAACCAATGAATGCGTGCAGATCGCGCTCAGCACCAAG
GAGCACTACGTCAACCGCAAGCTACTAGTTGTTGAGGAGCGCCACTCGCC
CATGGTCCAGCGCAACTCGAGGGGAGAACATGGCGGCGGCAGGGGCGGTC
GCAACGGGGGCCGCGGGCGTGTGTCGAGCGGCAGGGACGGCAGGGACGGG
GACCGGCGTCCCACGGGGAGGGGGGGGCGCGATCGTCCTGATGGCCCCAA
GGACGGCGGCTACCGGGCTAGAGGACGGGCAGAGGGCTAG
back to top