mRNA_Ecto-sp13_S_contig19508.6276.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19508.6276.1
Unique NamemRNA_Ecto-sp13_S_contig19508.6276.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19508.6276.1 vs. uniprot
Match: D7G209_ECTSI (B box-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G209_ECTSI)

HSP 1 Score: 270 bits (691), Expect = 9.570e-85
Identity = 137/140 (97.86%), Postives = 140/140 (100.00%), Query Frame = 1 
Query:    1 VDVYSGRWSSKARTINEELRMTLAALSGMMVAGELNWGQKNAALLDSLDDNQDAFADIFEVGRRYKITNPEKFRDFYGKMMYMLQDAQAQGRVGLELVKDIQMVYDLVEDRGGLEMLEDERVVAATADISGISMSKAEVN 420
            VDVYSGRWSSKARTINEELRMTLAALSGMMVAGELNWGQKNAALLDSLDDNQDAFA+IFEVGRRYKITNPEKFRDFYGKMMYMLQDAQAQGRVGLELVKDIQMVYDLVEDRGGLEML+DERVVAATADISGISMSKAEV+
Sbjct:  234 VDVYSGRWSSKARTINEELRMTLAALSGMMVAGELNWGQKNAALLDSLDDNQDAFAEIFEVGRRYKITNPEKFRDFYGKMMYMLQDAQAQGRVGLELVKDIQMVYDLVEDRGGLEMLQDERVVAATADISGISMSKAEVS 373
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19508.6276.1 vs. uniprot
Match: A0A6H5LC65_9PHAE (B box-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC65_9PHAE)

HSP 1 Score: 263 bits (673), Expect = 4.850e-82
Identity = 134/140 (95.71%), Postives = 136/140 (97.14%), Query Frame = 1 
Query:    1 VDVYSGRWSSKARTINEELRMTLAALSGMMVAGELNWGQKNAALLDSLDDNQDAFADIFEVGRRYKITNPEKFRDFYGKMMYMLQDAQAQGRVGLELVKDIQMVYDLVEDRGGLEMLEDERVVAATADISGISMSKAEVN 420
            VDVYS RWS KARTINEELRMTLAALSGMMVAGE NWGQKNAALLDSLDDNQDAFADIFEVGRRYKITNPEKFRDFYGKMMYMLQDAQAQGRVGLELVKDIQMVYDLVEDRGGLEML+DERVV ATADISGISMSKAEV+
Sbjct:  239 VDVYSSRWSFKARTINEELRMTLAALSGMMVAGERNWGQKNAALLDSLDDNQDAFADIFEVGRRYKITNPEKFRDFYGKMMYMLQDAQAQGRVGLELVKDIQMVYDLVEDRGGLEMLQDERVVVATADISGISMSKAEVS 378
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19508.6276.1 vs. uniprot
Match: A0A1G4J6M6_9SACH (LADA_0D07712g1_1 n=1 Tax=Lachancea dasiensis TaxID=1072105 RepID=A0A1G4J6M6_9SACH)

HSP 1 Score: 102 bits (254), Expect = 1.250e-22
Identity = 60/147 (40.82%), Postives = 91/147 (61.90%), Query Frame = 1 
Query:    1 VDVYSGRWSSKARTINEELRMTLAALSGMMVAGELNWGQKNAALLDSLDDNQDAFADIFEVGRRYKITNPEKFRDFYGKMMYMLQDA---QAQGRVGLELVKDIQMVYDLV---EDRG-GLEMLEDERVVAATADISGISMSKAEVN 420
            VD+ S  + SKA+ I E+L+   + L G+++A  L  G+K   +  +  DN   F D+FE+GRRYKI NPEK RD YGKM YM+ D+   Q +  +   L K I+ VYD +   ED+G  L++ ED+ ++ AT+ IS +  ++AE+N
Sbjct:  175 VDIIS--YKSKAKRIVEQLKEMCSVLCGLVIASNLKVGKKLLEM-KNFSDNSSWFQDVFEIGRRYKIMNPEKMRDTYGKMCYMIMDSRLPQIEDHMEFHLFKPIKTVYDYLSKPEDQGHALKVFEDKLILYATSQISPVGKTRAEIN 318
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19508.6276.1 vs. uniprot
Match: A0A397UK90_9GLOM (Uncharacterized protein n=1 Tax=Gigaspora rosea TaxID=44941 RepID=A0A397UK90_9GLOM)

HSP 1 Score: 101 bits (252), Expect = 1.920e-22
Identity = 54/134 (40.30%), Postives = 86/134 (64.18%), Query Frame = 1 
Query:   28 SKARTINEELRMTLAALSGMMVAGELNWGQKNAALLDSLDDNQDAFADIFEVGRRYKITNPEKFRDFYGKMMYMLQDA---QAQGRVGLELVKDIQMVYDLVEDRGGLEMLEDERVVAATADISGISMSKAEVN 420
            SK   I ++++   + LSG++VA +   GQ+  A   S ++N++ + +IFE+GRR+KI NPEK RD YGK+MYML D+   + Q  +   LVK I+ VY+ +E+R GL++L DE+V  AT +I      + ++N
Sbjct:   95 SKKNRIIQQIKELCSILSGLVVASDYKKGQEMFAN-KSYEENEEFYQNIFEIGRRHKIMNPEKMRDAYGKLMYMLMDSMLPEVQSMLSFNLVKPIKTVYNFLEERNGLDVLYDEKVAIATREIKPEGKLRHQIN 227
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19508.6276.1 vs. uniprot
Match: A0A1Y5IFF3_OSTTA (Uncharacterized protein n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5IFF3_OSTTA)

HSP 1 Score: 100 bits (250), Expect = 4.370e-22
Identity = 59/143 (41.26%), Postives = 90/143 (62.94%), Query Frame = 1 
Query:    1 VDVYSGRWSSKARTINEELRMTLAALSGMMVAGELNWGQKNAALLDS-LDDNQDAFADIFEVGRRYKITNPEKFRDFYGKMMYMLQDAQA---QGRVGLELVKDIQMVYDLVEDRGGLEMLEDERVVAATADISGISMSKAEV 417
            VDV+S R  SK + I  +L+   A + G++VA +   GQK   ++D    DN+  F D+FE+GRR+K+ NPEK R  YGK++++LQD+Q+   Q  +G +LVK +Q V+  ++ RGG  ML D  + AATA+I    + + EV
Sbjct:  177 VDVFSYR--SKTQRITRQLKEICAIMCGLVVASDYRAGQK--LIVDKEFKDNEAFFQDVFEIGRRHKVMNPEKMRSEYGKLIFLLQDSQSEEVQELLGFKLVKPLQTVFAFLQSRGGEAMLGDSLIEAATAEIMHEGLPRHEV 315
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19508.6276.1 vs. uniprot
Match: A0A8K1CHU6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHU6_PYTOL)

HSP 1 Score: 100 bits (248), Expect = 8.710e-22
Identity = 59/137 (43.07%), Postives = 83/137 (60.58%), Query Frame = 1 
Query:    1 VDVYSGRWSSKARTINEELRMTLAALSGMMVAGELNWGQKNAALLDSLDDNQDAFADIFEVGRRYKITNPEKFRDFYGKMMYMLQDA---QAQGRVGLELVKDIQMVYDLVEDRGGLEMLEDERVVAATADISGISM 402
            VDV S R  S  + + +EL+  L+ +SGMMVA +   G K   L +  +DN   F ++FE+GRRYKI NPE+ R+ YGKM+YMLQDA   + +  +G   V  IQ V   ++ R  L++L+D R V ATA  S  S+
Sbjct:  172 VDVLSYR--SPVKRVIQELKEVLSTVSGMMVATDFRKG-KRLVLNNKFEDNDTFFREVFEIGRRYKIMNPERMRNNYGKMIYMLQDASMREIKNYLGFSCVGPIQTVKSFLKKRHALDLLKDRRCVTATAVFSSTSL 305
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19508.6276.1 vs. uniprot
Match: A0A8H4EQB6_GIGMA (tRNA uridine 5-carboxymethylaminomethyl modification enzyme n=3 Tax=Gigaspora margarita TaxID=4874 RepID=A0A8H4EQB6_GIGMA)

HSP 1 Score: 100 bits (248), Expect = 8.760e-22
Identity = 54/134 (40.30%), Postives = 85/134 (63.43%), Query Frame = 1 
Query:   28 SKARTINEELRMTLAALSGMMVAGELNWGQKNAALLDSLDDNQDAFADIFEVGRRYKITNPEKFRDFYGKMMYMLQDAQ---AQGRVGLELVKDIQMVYDLVEDRGGLEMLEDERVVAATADISGISMSKAEVN 420
            SK   I ++++   + LSG++VA +   GQ+  A   S ++N++ + +IFE+GRR+KI NPEK RD YGK+MYML D+     Q  +   LVK I+ V+  +E+R GL++L DE+V  AT +I     S+ ++N
Sbjct:  399 SKKNRIVQQIKELCSILSGLVVASDYKKGQEMFAN-KSYEENEEFYQNIFEIGRRHKIMNPEKMRDAYGKLMYMLMDSMLPDVQTMLSFNLVKPIKTVHSFLEERNGLDVLYDEKVAIATREIKPEGKSRHQIN 531
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19508.6276.1 vs. uniprot
Match: A0A1G4JXU5_9SACH (LANO_0E12002g1_1 n=1 Tax=Lachancea nothofagi CBS 11611 TaxID=1266666 RepID=A0A1G4JXU5_9SACH)

HSP 1 Score: 99.8 bits (247), Expect = 1.120e-21
Identity = 56/147 (38.10%), Postives = 87/147 (59.18%), Query Frame = 1 
Query:    1 VDVYSGRWSSKARTINEELRMTLAALSGMMVAGELNWGQKNAALLDSLDDNQDAFADIFEVGRRYKITNPEKFRDFYGKMMYMLQDA---QAQGRVGLELVKDIQMVYDLV----EDRGGLEMLEDERVVAATADISGISMSKAEVN 420
            VD+ S  + SKA+ I E+L+   + L G+++A  L  G+K   +  +  DN   F D+FE+GRRYKI NPEK RD YGK+ YM+ D+   Q +  +   L K I  VYD +    ED   L++ ED+ ++ AT+ +S +  ++ E+N
Sbjct:  179 VDIIS--YKSKAKRIVEQLKEMCSVLCGLVIASNLKIGKKLLEM-KNFSDNSSWFQDVFEIGRRYKIMNPEKMRDTYGKLCYMIMDSRLPQIEDHMEFHLFKPISTVYDFLNSRTEDGQALKLFEDKLILYATSQVSPVGKARGEIN 322
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19508.6276.1 vs. uniprot
Match: A0A2Z6QK00_9GLOM (B box-type domain-containing protein n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6QK00_9GLOM)

HSP 1 Score: 99.4 bits (246), Expect = 1.610e-21
Identity = 56/137 (40.88%), Postives = 85/137 (62.04%), Query Frame = 1 
Query:   25 SSKARTINEELRMTLAALSGMMVAGELNWGQKNAALLD--SLDDNQDAFADIFEVGRRYKITNPEKFRDFYGKMMYMLQDA---QAQGRVGLELVKDIQMVYDLVEDRGGLEMLEDERVVAATADISGISMSKAEVN 420
            SSK R +  +++   + LSG+MVA +   GQ+   L++  S +DNQ+ F  IFE+GRR+KI NPEK RD YGK+MYML D+     Q  +   L+  I+ VY  +++RGGL +L  + +V AT +I     S+ ++N
Sbjct:  323 SSKTRRMVHQIKDLCSILSGLMVASDYKKGQE---LINNRSFEDNQEFFQKIFEIGRRHKIMNPEKMRDAYGKLMYMLMDSVIPDVQDMLSFNLIIPIKTVYSFLKERGGLAVLHHDYIVDATKEIIPDGKSRPQIN 456
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19508.6276.1 vs. uniprot
Match: A0A8H3R479_9GLOM (Glucose-inhibited division protein A subfamily n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A8H3R479_9GLOM)

HSP 1 Score: 99.4 bits (246), Expect = 1.700e-21
Identity = 56/137 (40.88%), Postives = 85/137 (62.04%), Query Frame = 1 
Query:   25 SSKARTINEELRMTLAALSGMMVAGELNWGQKNAALLD--SLDDNQDAFADIFEVGRRYKITNPEKFRDFYGKMMYMLQDA---QAQGRVGLELVKDIQMVYDLVEDRGGLEMLEDERVVAATADISGISMSKAEVN 420
            SSK R +  +++   + LSG+MVA +   GQ+   L++  S +DNQ+ F  IFE+GRR+KI NPEK RD YGK+MYML D+     Q  +   L+  I+ VY  +++RGGL +L  + +V AT +I     S+ ++N
Sbjct:  322 SSKTRRMVHQIKDLCSILSGLMVASDYKKGQE---LINNRSFEDNQEFFQKIFEIGRRHKIMNPEKMRDAYGKLMYMLMDSVIPDVQDMLSFNLIIPIKTVYSFLKERGGLAVLHHDYIVDATKEIIPDGKSRPQIN 455
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19508.6276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G209_ECTSI9.570e-8597.86B box-type domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5LC65_9PHAE4.850e-8295.71B box-type domain-containing protein n=1 Tax=Ectoc... [more]
A0A1G4J6M6_9SACH1.250e-2240.82LADA_0D07712g1_1 n=1 Tax=Lachancea dasiensis TaxID... [more]
A0A397UK90_9GLOM1.920e-2240.30Uncharacterized protein n=1 Tax=Gigaspora rosea Ta... [more]
A0A1Y5IFF3_OSTTA4.370e-2241.26Uncharacterized protein n=2 Tax=Ostreococcus tauri... [more]
A0A8K1CHU6_PYTOL8.710e-2243.07Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A8H4EQB6_GIGMA8.760e-2240.30tRNA uridine 5-carboxymethylaminomethyl modificati... [more]
A0A1G4JXU5_9SACH1.120e-2138.10LANO_0E12002g1_1 n=1 Tax=Lachancea nothofagi CBS 1... [more]
A0A2Z6QK00_9GLOM1.610e-2140.88B box-type domain-containing protein n=1 Tax=Rhizo... [more]
A0A8H3R479_9GLOM1.700e-2140.88Glucose-inhibited division protein A subfamily n=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19508contigEcto-sp13_S_contig19508:427..3043 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop0
Start0
Seed ortholog score103.6
Seed ortholog evalue7.6e-20
Seed eggNOG ortholog70448.A0A090M2Q8
Model size420
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.Protein of unknown function (DUF2009)
EggNOG OGs28J77@1,2QRJJ@2759,34JJD@3041,37YMR@33090
Cds size420
COG Functional cat.S
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462988.9454315-CDS-Ecto-sp13_S_contig19508:426..5401681462988.9454315-CDS-Ecto-sp13_S_contig19508:426..540Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19508 427..540 -
1681462988.9570785-CDS-Ecto-sp13_S_contig19508:1143..12691681462988.9570785-CDS-Ecto-sp13_S_contig19508:1143..1269Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19508 1144..1269 -
1681462988.9671233-CDS-Ecto-sp13_S_contig19508:1836..19191681462988.9671233-CDS-Ecto-sp13_S_contig19508:1836..1919Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19508 1837..1919 -
1681462988.9770079-CDS-Ecto-sp13_S_contig19508:2946..30431681462988.9770079-CDS-Ecto-sp13_S_contig19508:2946..3043Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19508 2947..3043 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19508.6276.1prot_Ecto-sp13_S_contig19508.6276.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19508 427..3043 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19508.6276.1

>prot_Ecto-sp13_S_contig19508.6276.1 ID=prot_Ecto-sp13_S_contig19508.6276.1|Name=mRNA_Ecto-sp13_S_contig19508.6276.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=140bp
VDVYSGRWSSKARTINEELRMTLAALSGMMVAGELNWGQKNAALLDSLDD
NQDAFADIFEVGRRYKITNPEKFRDFYGKMMYMLQDAQAQGRVGLELVKD
IQMVYDLVEDRGGLEMLEDERVVAATADISGISMSKAEVN
back to top

mRNA from alignment at Ecto-sp13_S_contig19508:427..3043-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19508.6276.1 ID=mRNA_Ecto-sp13_S_contig19508.6276.1|Name=mRNA_Ecto-sp13_S_contig19508.6276.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2617bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19508:427..3043- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGACGTGTACTCCGGTAGATGGAGCTCCAAGGCCAGGACCATCAACGA
GGAGCTTCGGATGACCCTCGCAGCTCTTTCGGGCATGATGGTCGCGGGTG
AGCTGTTGTTGTATTTTTGTTCGCCTCCCCAGCCGACACAACGCTCGCGG
ATTTCAGGCGAGAAGGTCGTTTTTTTTGCTCGTGCGCGACTTAATTGTCA
CCAGAAAATTGGTCCCCGGCTTTGCGCTCTGGCCAAGGAATCGGAGAACA
TTCTTCGAATTTTCCGCACCCGGTGACGGCGGCTGCCGTGTCGTTCGTGC
CAGCTGTGTGTTGCCATCATCCGAAGGGCATTCCGTCGACCCGGCGGTAT
TTCGTATTTTATACCTGTTGTTTTTCCCGCTGTGCGCGTCTGTGTAGTCG
CGAAGCGGTTCTTCGTGATGTAGCCTCTCTTACGCGAGCAAATTGCTACC
TGGTACCTGTAGCTATGATACCGCATGATGTTCCAAGCGTAGTGGTCTTG
GGTCGAACATTTGTATCGTGACGTGCTTTCTACCTCCACTCGTTTTTTTT
TTTTTTACTTTCGAACACTCAACCTTGCGTCAGTAACCAGAGTTGTTCGG
GGGACGAGCAGGGGCGTTTTTTTTTTTCTTCCGTTGTGTCATACGTACAT
CTACGGCAGTCATCCTTGCGGTTGCGATAGGGAGTTGTGTTACCGTAAGA
GGCGCGTTCTCTCGGTCCAGGCTGGATCAGTTTCGACGGCTGCCGAGGCG
CAGACCGAATGGGAGGTCGCAACGATTTCCTGGCAGAGAATCATCGCCAA
AGCGTTTTCAGATGTTAAGAATGCAGCAGCAGCAGCAGCAGCATCAGCGA
CAACGACAGAAATCTACGGAGAGACGCCCCATACGTGGCAAGAATCTTGC
TCGTGGGTAACATACTTGTGGCGATTTTGAGTTGGCTCCCGGAGGGCTTC
GCGTGATCGGCGGCATGTATCTCTCTTTCGCCCTTGGTGGTGTTGTGGAG
GAGTCAATCGTTTCAGGAGCGGGGTCTCCTGAGCCTCAACGAAAAATGCA
CGATGAACCGACTCGCCCGCCCCGCCGCGTGTGTGCCTGCACCCCGTCCG
TGCGCAACGAAACAATACGGGCAGGCGAACTTAACTGGGGGCAGAAGAAC
GCGGCCCTCCTCGACTCGTTGGACGACAACCAGGACGCCTTCGCCGATAT
TTTCGAGGTGCAGTACAGCAGTACAGCAGTACAGCAGCACAGCAGTTTTT
CCCCGCCTTGAAGGACACCTACCTCCCGCTTCAGGACACTCCTCCCCCAC
ACACTTTGAAAGACGCTATTTTCAGAAGCATAGCGTCCGGCAGACCTTTC
AAAGTTCGAGGGGGGGTTATTTTTGTAGGCGCTTTCCGCGCGCTTTGTGG
ACCGCCATTTATTTCTTTTTTTTTCACAAATAACGACGAGTGCACTTACA
ATGTTGAACACTATGTTCTGTACTGCTATGTCGAAGTTGTGAAAAAAGCG
GGTGCTGTCTGCTTTGGAGTTGATACATACCTTCCGCCGATGCAAACCAA
CAACGTCTTTCAGCGCGCCGTGCCGTGCACTGTAGGCGTACCCGCGTGCG
TCATGGATACCCCCATTCGAGTGCAGCAAGCAGCCCATCATGGACGTTCT
TCAACGTGTGTATTCCGGGTTTTACGTTTTTTCAGCGCCCCTGTTGCCTG
ACCTTATACGTTTTCTCGGCCTGATTCCTCTCTGGGCCTCGATACCCGTA
CCTCTTTTTGTCTCGACGGGCAAGGTCGGGCGGCGGTACAAAATCACCAA
CCCGGAGAAGTTCAGGGACTTCTACGGCAAGATGATGTACATGCTGCAGG
ACGCGCAGGCGCAGGGGCGGGTGGGGTTGGAACTAGTGAAGGACATTCAG
GTGTGTGCCTCTTATGAATGGCATCGACCGCGCTACAGAACATGCCCGCG
CTTAAGAACCTCTACGATTGGGCCGAGGCTGAGGTTCTTAGTTCTAGGGT
CATGCTACGAATTGTCGCTACATAGGTTTTCCTTAGTGTAGGGTTCCTTA
GCCGAGCTCACAACGGGTGCTCAAGTTCTTCATTTTTGATTTTTTTTAAG
CTCAATTTTCTTAACTCCTGGGATCTTAGAAGTGCCAGCATCAGTCAGGG
TAAAAAGGGAAGACGCTTCCAAAGGCCATGCCATGGGACCCCGTGAAGGA
GGGTCATCGGGGAGCCCTGATAGACTATTCTGCGGATTATTCACAGATTC
AAGACAGAAACGTGTCGCCGCTTGTGTGTGTGTTCAACCTGGCATTCACC
GCGCGACCGTGCTGACCAATCAAGAGATACCAGCCTCGCAGCGGGACAAA
AAAACTCAACACGGCTTGTATGTAGTCCGCGGGGTGTGGGGGATGCGCGA
GGGAAGCCTGGACGGGGCATTCCTGCCTCCGGATTCGGGGCACTCGTGAG
AAAGGGAAGTGTGTGCAATTGTTGTTGCTGACGCGCCGTTTTGCCCGCAA
CAGATGGTGTATGATTTGGTGGAGGATAGAGGAGGCTTGGAGATGCTGGA
AGACGAGCGAGTCGTGGCCGCCACAGCGGACATTTCGGGCATCTCTATGA
GCAAAGCAGAGGTGAAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19508:427..3043-

>mRNA_Ecto-sp13_S_contig19508.6276.1 ID=mRNA_Ecto-sp13_S_contig19508.6276.1|Name=mRNA_Ecto-sp13_S_contig19508.6276.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=420bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19508:427..3043- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGACGTGTACTCCGGTAGATGGAGCTCCAAGGCCAGGACCATCAACGA
GGAGCTTCGGATGACCCTCGCAGCTCTTTCGGGCATGATGGTCGCGGGCG
AACTTAACTGGGGGCAGAAGAACGCGGCCCTCCTCGACTCGTTGGACGAC
AACCAGGACGCCTTCGCCGATATTTTCGAGGTCGGGCGGCGGTACAAAAT
CACCAACCCGGAGAAGTTCAGGGACTTCTACGGCAAGATGATGTACATGC
TGCAGGACGCGCAGGCGCAGGGGCGGGTGGGGTTGGAACTAGTGAAGGAC
ATTCAGATGGTGTATGATTTGGTGGAGGATAGAGGAGGCTTGGAGATGCT
GGAAGACGAGCGAGTCGTGGCCGCCACAGCGGACATTTCGGGCATCTCTA
TGAGCAAAGCAGAGGTGAAC
back to top