mRNA_Ecto-sp13_S_contig1949.6268.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1949.6268.1
Unique NamemRNA_Ecto-sp13_S_contig1949.6268.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1949.6268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1949contigEcto-sp13_S_contig1949:13398..14305 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size250
Hectar predicted targeting categoryother localisation
Exons2
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462988.0578487-CDS-Ecto-sp13_S_contig1949:13399..134671681462988.0578487-CDS-Ecto-sp13_S_contig1949:13399..13467Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1949 13400..13467 -
1681462988.0666509-CDS-Ecto-sp13_S_contig1949:14127..143051681462988.0666509-CDS-Ecto-sp13_S_contig1949:14127..14305Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1949 14128..14305 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1949.6268.1prot_Ecto-sp13_S_contig1949.6268.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1949 13400..14305 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1949.6268.1

>prot_Ecto-sp13_S_contig1949.6268.1 ID=prot_Ecto-sp13_S_contig1949.6268.1|Name=mRNA_Ecto-sp13_S_contig1949.6268.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=82bp
AAHRAYETVGLLRVVHDSDRETGRKTFGFPVRVMSNSDKPNVFVCTVISV
HCFQRLIIIGHRGFLSRQARGCFRAEGHRGGR
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mRNA from alignment at Ecto-sp13_S_contig1949:13398..14305-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1949.6268.1 ID=mRNA_Ecto-sp13_S_contig1949.6268.1|Name=mRNA_Ecto-sp13_S_contig1949.6268.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=908bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1949:13398..14305- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGCCCACCGTGCATACGAAACCGTTGGGCTTCTCCGAGTTGTTCATGA
CTCGGACAGGGAAACCGGAAGGAAGACTTTCGGTTTCCCCGTCCGAGTGA
TGAGCAACTCAGACAAGCCCAACGTTTTCGTATGCACGGTGATCAGCGTA
CATTGTTTTCAACGGTTGATTATAATAGGTGTGATGGGTGACACATTGTT
GAGTGTGCTGAGAGCATATTGTAAACACTATTGAATTCAGTTCGTGTATC
TCTGTACAGGCGGGCGGTGAGCGCGCCTAGGAAAGCTGGACGTTTGCTTT
ATCCTTTCATCGCCCCTGCAGAGCACTCCTGCATGACAACAGCTTGTGTC
TCTTCAACTTTTGTGAAGAGTCGAACGTTGGTCGGGTTTTCTTACGTGCC
CGAAAGCTCTGCTGTATTTCTCGCACCACTCAATTTCGAGGAATCTCGCA
CCGGGCAAGGCCGTGTTTTACCTGGCTAGTGCTTCTTCCGTCTCCATAGA
CACGTGCAGTATATCTACACTGTGATTCCACGGGTCAGTCTGCAAGCACG
GTCGATGTCGATGTCTCCCACCCAGATTGTCACACGCACGGCGCTCTTCT
CGAGAAGAGTGAGTATGTGGGACCAGTAGGATGCAAGAAACTAACAAAAT
CACATGATCCATTTGTCGGGCAGAGGGGCTTACCAGTAGTAAAACCCCAT
TCCATGGATGAGTCGGTCACAGCGGTCGATGCTTATTTTATGTCAACATA
GAGCAGCTTGTTGACACGTCTCTCCCCCTCCGGCTTGTGCATGTACCCTA
TCCGAACGTTTTCCTTTGTCACCCCGTGTCTCACGCAGGTCACCGCGGGT
TTCTCTCAAGACAAGCACGTGGTTGTTTTCGCGCAGAAGGACATCGCGGT
GGGAGACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1949:13398..14305-

>mRNA_Ecto-sp13_S_contig1949.6268.1 ID=mRNA_Ecto-sp13_S_contig1949.6268.1|Name=mRNA_Ecto-sp13_S_contig1949.6268.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1949:13398..14305- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGCCCACCGTGCATACGAAACCGTTGGGCTTCTCCGAGTTGTTCATGA
CTCGGACAGGGAAACCGGAAGGAAGACTTTCGGTTTCCCCGTCCGAGTGA
TGAGCAACTCAGACAAGCCCAACGTTTTCGTATGCACGGTGATCAGCGTA
CATTGTTTTCAACGGTTGATTATAATAGGTCACCGCGGGTTTCTCTCAAG
ACAAGCACGTGGTTGTTTTCGCGCAGAAGGACATCGCGGTGGGAGA
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