mRNA_Ecto-sp13_S_contig19487.6265.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19487.6265.1
Unique NamemRNA_Ecto-sp13_S_contig19487.6265.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19487.6265.1 vs. uniprot
Match: A0A6H5KLY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLY9_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.050e-15
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = -1 
Query:  344 DPCTLLARAEVKRFDSCCIFLTRVRAAFKVLKNFMMRRCFF 466
            +PCTLLARAEVKR  SCC+FLTRVRAAFKVLKN MMRRCFF
Sbjct:   36 NPCTLLARAEVKRLVSCCMFLTRVRAAFKVLKNVMMRRCFF 76
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19487.6265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KLY9_9PHAE1.050e-1587.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19487contigEcto-sp13_S_contig19487:188..653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size467
Hectar predicted targeting categoryother localisation
Exons1
Cds size306
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462988.0249896-CDS-Ecto-sp13_S_contig19487:187..4931681462988.0249896-CDS-Ecto-sp13_S_contig19487:187..493Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19487 188..493 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462988.0335743-UTR-Ecto-sp13_S_contig19487:493..6531681462988.0335743-UTR-Ecto-sp13_S_contig19487:493..653Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19487 494..653 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19487.6265.1prot_Ecto-sp13_S_contig19487.6265.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19487 188..493 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19487.6265.1

>prot_Ecto-sp13_S_contig19487.6265.1 ID=prot_Ecto-sp13_S_contig19487.6265.1|Name=mRNA_Ecto-sp13_S_contig19487.6265.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=102bp
IFVVSACRNLFDFGRSRFPFTVSHFGKRKTNPFQQETEETQPGALVSLEV
KTKGQRWERGGGSNQHHKAALNRSNKFGLTTLSKITQTHRTRHACLPPRP
W*
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mRNA from alignment at Ecto-sp13_S_contig19487:188..653+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19487.6265.1 ID=mRNA_Ecto-sp13_S_contig19487.6265.1|Name=mRNA_Ecto-sp13_S_contig19487.6265.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=466bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19487:188..653+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATTTTCGTTGTTTCTGCATGCAGGAATCTCTTCGATTTCGGACGCTCACG
ATTCCCTTTCACCGTGAGTCACTTTGGAAAACGGAAAACGAACCCCTTCC
AGCAAGAAACTGAAGAAACTCAACCTGGAGCACTTGTGTCATTGGAAGTT
AAAACCAAGGGCCAGAGGTGGGAGAGAGGGGGTGGATCGAACCAACACCA
TAAGGCAGCCCTAAACAGGTCAAACAAGTTTGGCCTGACCACACTTTCAA
AGATCACTCAAACACATCGCACAAGGCATGCCTGCTTGCCTCCACGACCC
TGGTAAAAAGTGTGCACTGTGCTCGATCCCCACTGCAGCTGTGAAAGAAG
CATCTACGCATCATAAAGTTCTTCAACACCTTGAAAGCAGCTCGAACACG
GGTCAAAAAGATGCAGCAAGAATCAAATCGTTTCACTTCAGCTCGCGCCA
GTAGCGTGCACGGATC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19487:188..653+

>mRNA_Ecto-sp13_S_contig19487.6265.1 ID=mRNA_Ecto-sp13_S_contig19487.6265.1|Name=mRNA_Ecto-sp13_S_contig19487.6265.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=306bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19487:188..653+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATTTTCGTTGTTTCTGCATGCAGGAATCTCTTCGATTTCGGACGCTCACG
ATTCCCTTTCACCGTGAGTCACTTTGGAAAACGGAAAACGAACCCCTTCC
AGCAAGAAACTGAAGAAACTCAACCTGGAGCACTTGTGTCATTGGAAGTT
AAAACCAAGGGCCAGAGGTGGGAGAGAGGGGGTGGATCGAACCAACACCA
TAAGGCAGCCCTAAACAGGTCAAACAAGTTTGGCCTGACCACACTTTCAA
AGATCACTCAAACACATCGCACAAGGCATGCCTGCTTGCCTCCACGACCC
TGGTAA
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