mRNA_Ecto-sp13_S_contig19481.6261.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19481.6261.1
Unique NamemRNA_Ecto-sp13_S_contig19481.6261.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19481.6261.1 vs. uniprot
Match: D8LBX6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBX6_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 7.190e-49
Identity = 98/111 (88.29%), Postives = 99/111 (89.19%), Query Frame = 1 
Query:    1 AEVLTVLKHALFKAITINAGGDDPDEGNKGLAALLANTEVDRGSGSERKTCLTSSSSASNLAGSSNSTGEGGCEETRKVSSSGVVGLTAATAISTGNADPNRSGGSRRPRR 333
            AEVLTVLKHALFKAITINAGGDDPDEGNKGLAALLANTEVDRGSG  RKT LTSSSSASNLAG SNSTGEGGCEET KV SSGV+  T AT ISTGNADPN SGG RRPRR
Sbjct:  261 AEVLTVLKHALFKAITINAGGDDPDEGNKGLAALLANTEVDRGSGLARKTSLTSSSSASNLAGISNSTGEGGCEETGKVGSSGVLVSTTAT-ISTGNADPNSSGGGRRPRR 370
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19481.6261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBX6_ECTSI7.190e-4988.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19481contigEcto-sp13_S_contig19481:1458..2504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size348
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-20_003650.1
Cds size345
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462987.8870733-CDS-Ecto-sp13_S_contig19481:1457..15441681462987.8870733-CDS-Ecto-sp13_S_contig19481:1457..1544Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19481 1458..1544 +
1681462987.8961093-CDS-Ecto-sp13_S_contig19481:2244..25021681462987.8961093-CDS-Ecto-sp13_S_contig19481:2244..2502Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19481 2245..2502 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19481.6261.1prot_Ecto-sp13_S_contig19481.6261.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19481 1458..2502 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19481.6261.1

>prot_Ecto-sp13_S_contig19481.6261.1 ID=prot_Ecto-sp13_S_contig19481.6261.1|Name=mRNA_Ecto-sp13_S_contig19481.6261.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=115bp
AEVLTVLKHALFKAITINAGGDDPDEGNKGLAALLANTEVDRGSGSERKT
CLTSSSSASNLAGSSNSTGEGGCEETRKVSSSGVVGLTAATAISTGNADP
NRSGGSRRPRRRGSE
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mRNA from alignment at Ecto-sp13_S_contig19481:1458..2504+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19481.6261.1 ID=mRNA_Ecto-sp13_S_contig19481.6261.1|Name=mRNA_Ecto-sp13_S_contig19481.6261.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1047bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19481:1458..2504+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGAGGTGCTGACGGTGCTGAAGCACGCGCTGTTCAAGGCTATCACGAT
CAACGCCGGTGGCGACGACCCCGACGAGGGAAACAAGGTTCGTTGGATTG
TGACCCCAACACGCCACCGCGGTATATGGTGGTACGAAGCGATGGATGGG
TTTTGCACGGCGTGAATTATAGTTTGGGTAATCCTTGCAAGGGTCAGTCG
TCCATGCCTGTGTTTTTGTGGTTCTTTGCAAGCATCGCGCTTGCAGTCGT
TTTCGAGGGTGTTGCTTTTTTTGTTTCGGCAGAAAAGTTCTCACCGCGGA
ACCCATCATGTCCTCGGTGCGAAGCCTCAATTAGCCGCGGTCAAGAGGAT
CTTGACAGGTGCACCATGCACGTCTCGCCCAACAGCGCACTCTAATTGCC
CTCCCTCTAAGCTGTGGCTTATGTTTCCGATCAGTGTATTCAGTTGCAGA
CGGATCGAAAACAGGGCGGTAGGACGATAAATCCCACTTGATACGACCAC
ACCAGACCCACGCAAATTGACCCACTTGATGCGAACGGAATGACACACAT
TGTTCGAACACTTAGACCTCGATCTCAGGGTTCCGTTTCCCATGCCTTCT
CGGCGAGCTTCGTTGGCGGTGACGGCGTTGTTGTTTCCGCTCGCTACGGT
ATCGCCGTGACTGTCGGCGGGGCCGCCCGTTTTTTTCATGTAATGTCACT
GTGACTTGTTGACTGTGGTTGTGAACTATGAACAGAAGTTTTCGATTTGT
TGGTGACTTGGATTGTTCGCTGTTTCCGCCGTAACAGGGATTGGCGGCCC
TCCTGGCCAACACGGAGGTAGACCGCGGCTCCGGCTCGGAAAGAAAAACG
TGCCTGACCTCTTCCTCTTCGGCGAGCAACCTTGCCGGAAGTTCGAACAG
CACCGGCGAGGGGGGCTGTGAAGAGACTAGGAAAGTCAGCAGCAGCGGCG
TGGTGGGGTTGACAGCGGCGACGGCAATCTCCACCGGAAACGCCGATCCC
AATAGAAGCGGCGGGAGTCGCCGCCCTCGTCGTCGCGGGAGCGAGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19481:1458..2504+

>mRNA_Ecto-sp13_S_contig19481.6261.1 ID=mRNA_Ecto-sp13_S_contig19481.6261.1|Name=mRNA_Ecto-sp13_S_contig19481.6261.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=345bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19481:1458..2504+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGAGGTGCTGACGGTGCTGAAGCACGCGCTGTTCAAGGCTATCACGAT
CAACGCCGGTGGCGACGACCCCGACGAGGGAAACAAGGGATTGGCGGCCC
TCCTGGCCAACACGGAGGTAGACCGCGGCTCCGGCTCGGAAAGAAAAACG
TGCCTGACCTCTTCCTCTTCGGCGAGCAACCTTGCCGGAAGTTCGAACAG
CACCGGCGAGGGGGGCTGTGAAGAGACTAGGAAAGTCAGCAGCAGCGGCG
TGGTGGGGTTGACAGCGGCGACGGCAATCTCCACCGGAAACGCCGATCCC
AATAGAAGCGGCGGGAGTCGCCGCCCTCGTCGTCGCGGGAGCGAG
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