mRNA_Ecto-sp13_S_contig19470.6257.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19470.6257.1
Unique NamemRNA_Ecto-sp13_S_contig19470.6257.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19470.6257.1 vs. uniprot
Match: D7FQS8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQS8_ECTSI)

HSP 1 Score: 891 bits (2302), Expect = 0.000e+0
Identity = 472/517 (91.30%), Postives = 487/517 (94.20%), Query Frame = 1 
Query:  229 MDTRLRSLYECYEGARAGAVDFRDILCCTIVLRRFKDIRDNPLKLFRDLILLYSDDEGRVVQRQDALRVVRIGALHGGHILQTSNRLDKYLAEEAGPRGLKPTFRDLDITFLMQTIEANPSILVAFRTQLWQRIPEAWRLGVLQAVEAMGFEKASSGAMAMKERRAVRWYSKTLSRRIIVDWKIFRNRAKQIRAQRERIQNVRRRHTLRAWHASAAIHVLHRKRRGVADQYGRICTLQRYFYSIVKYVEVNKRLAAMAWKFSKQGKLVVAGVGLLRGVLRKRSMRLALQAWCETASLMNAWGFAVDLAGERLCRRVFAALRDTVRAAVAARRAEDEAEMRAAALAENIEEAERERVLLAELAEERKKRQKAXXXXXXXXXXXXXXXXXXXAARAGSVARDAEVLQRQREARKRRVYENRVKVKNEFDATWEVKLRETVEKEMELAKEWLESDPEAPFKVQKEMKILQRKFYAAPLPETAELERALRDPANYIFAHMANLLYKENKTLQMFFNQFDKE 1779
            MDTRLRSLYECYEGARAGAVD+RDILCCTIVLRRFKDIRDNP KLFRDLILLYSDDEG VV+RQDALRV+RIGALHGGHILQTS RLDKYLAEEA PRGLKPTFRDLDITFLM TIEANPSILVAFRTQLWQRIPEAWRLGVLQAVEAMGFEKASSGAMAMKERRAVRWY+KTLSRRIIV WK+FRNRAKQIRAQRERIQNVRRR TLRAWHASAAIHVL RKRRGVADQYGRICTL+RYFYSIVKYVEVNKRLAA+AWKFSKQGKLV+AGVGLLRGVLRKRSMRLALQAWCETASLMNAWGFAVDLAGERLCRRVFAALRDTVRAAV ARRAEDEAEMRAAALAE+IEEAERERVLLAELAEERKKRQKA                   AARAGSVARDAEVLQRQREAR+RRVYENRVKVKN+FDA WEVKLRETVE+EMELAKEWL +DPEAPFKVQKEMKIL+RKFYAAPLPETAELERALRDPANYIFAHMANL+YKENKTLQMFFNQFDKE
Sbjct:    1 MDTRLRSLYECYEGARAGAVDYRDILCCTIVLRRFKDIRDNPRKLFRDLILLYSDDEGEVVRRQDALRVMRIGALHGGHILQTSTRLDKYLAEEARPRGLKPTFRDLDITFLMDTIEANPSILVAFRTQLWQRIPEAWRLGVLQAVEAMGFEKASSGAMAMKERRAVRWYTKTLSRRIIVGWKVFRNRAKQIRAQRERIQNVRRRQTLRAWHASAAIHVLRRKRRGVADQYGRICTLRRYFYSIVKYVEVNKRLAAVAWKFSKQGKLVMAGVGLLRGVLRKRSMRLALQAWCETASLMNAWGFAVDLAGERLCRRVFAALRDTVRAAVVARRAEDEAEMRAAALAESIEEAERERVLLAELAEERKKRQKAEEKAALMARRAAEHVEKIEAARAGSVARDAEVLQRQREARRRRVYENRVKVKNDFDAAWEVKLRETVEREMELAKEWLATDPEAPFKVQKEMKILKRKFYAAPLPETAELERALRDPANYIFAHMANLIYKENKTLQMFFNQFDKE 517
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19470.6257.1 vs. uniprot
Match: A0A836CKE2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKE2_9STRA)

HSP 1 Score: 214 bits (544), Expect = 1.020e-55
Identity = 213/610 (34.92%), Postives = 293/610 (48.03%), Query Frame = 1 
Query:  112 RYHSLACALEATPGQGCTVSKAAFVARMIAAYRFDRKLRMDTRLRSLYECYEGARAGAVDFRDILCCTIVLRRFKDIRDNPLKLFRDLILLYSDDEGRVVQRQDALRVVRIGALHGGHILQTSNRLDKYLAEEAGPRGLKPTFRDLDIT--------------FLMQTIEANPSILVAFRTQLWQRIPEAWRLGVLQAVEAMGFEKASSGAMAMKERRAVRWYSKTLSRRIIVDWKIFRNRAKQIRAQRERIQNVR------------------------------------RRHTLRAWHASAAIHVLHRKRRGVADQYGRICTLQRYFYSIVKYVEVNKRLAAMAWKFSKQGKLVVAGVGLLRGVLRKRSMRLALQAWCETASLMNAWGFAVDLAGERLCRRVFAALRDTVRAAVAARRAEDEAEMRAAALAENIEEAERERVL--LAELAEERKKRQKAXXXXXXXXXXXXXXXXXXXAARAGSVARDAEVLQRQREARKRRVYENRVKVKNEFDATWEVKLRETVEKEMELAKEWLESD--PEAPFKVQKEMKILQRKFYAAPLPETAELERALRDPANYIFAHMANLLYKENKTLQMFFNQFDKE 1779
            R+ + A A  ATP    +++ A  V    A   F    R + RLR+LY  ++GA  GAVD R+I    ++LR+ + IR++P +L   L  L++ D G ++ R DAL+VV + A     +  T+ ++D++L E A    LKPTF+ L ++                +  ++ + ++L A  + +W R+P  WRL  LQ  E  G  + S+   A+K  RA     + L       W+ F  R +  R QRE +   R                                    R   LRA  A AA     R RRG       +   +R      +      R+    W  S  GK V+ GV   R V R+   R AL+ WCETASLM+AW FAV  +GER  RR F ALR  V  A++ RR E E                       LAE A+ER  R   XXXXXXXXXXXXXXXXXXX   AG VAR+  VLQ Q+ AR++RV +       +  A W V   E V        EWL       A ++V+K +  L+R+F AAP PETA+LERAL DPAN +FA +A+ L+  + TL+ FFN+FD E
Sbjct:  431 RHMAAAQAQAATPDFAASLAPAIHVDAS-ALRLFPGDARAEQRLRALYRAHDGAAQGAVDLREIAAGALLLRQHRLIRESPRQLLVALCELFTKDGGELLARSDALKVVSLAATTATDVYLTAGKMDRHLEEMAASYNLKPTFKMLPVSPAGRGARDAAVSLDLFLDVLDTHTALLSAIASTMWARVPAQWRLTCLQEAEDAGIGRLSAALSAIKAARAAAHRRRALVGAHWRAWRRFAERCRVERHQRETVLRCRCAXXXXXXXXXXXXXXXXXXXXNAAAAMGAGRILRLRLAQLRAATAEAA----QRLRRGALA----VSDTERCLRRCGRAASARHRVTRALWTSSAAGKRVLLGVARWRAVERRARQRSALRRWCETASLMSAWDFAVATSGERPRRRAFRALRAYVAHALSQRRLETEXXXXXXXXXXXXXXXXXXXXXXXLAEEAQERA-RXXXXXXXXXXXXXXXXXXXXXXXXXAG-VARERAVLQEQQAARRQRVRDQAAAALEQHKAYWAVHTEELVAAARRRRCEWLSGGGGDAARYEVEKGVAALRRRFLAAPSPETAQLERALADPANIVFAFVASRLWSRHVTLRDFFNEFDVE 1029
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19470.6257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQS8_ECTSI0.000e+091.30Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CKE2_9STRA1.020e-5534.92Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19470contigEcto-sp13_S_contig19470:458..2715 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score896.7
Seed ortholog evalue5.7e-258
Seed eggNOG ortholog2880.D7FQS8
Model size1779
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.EF-hand, calcium binding motif
EggNOG OGs2CJ0G@1,2SKVK@2759
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-01_000370.1
Cds size1779
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462987.4902391-CDS-Ecto-sp13_S_contig19470:457..9611681462987.4902391-CDS-Ecto-sp13_S_contig19470:457..961Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19470 458..961 -
1681462987.5149894-CDS-Ecto-sp13_S_contig19470:1440..27151681462987.5149894-CDS-Ecto-sp13_S_contig19470:1440..2715Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19470 1441..2715 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19470.6257.1prot_Ecto-sp13_S_contig19470.6257.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19470 458..2715 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19470.6257.1

>prot_Ecto-sp13_S_contig19470.6257.1 ID=prot_Ecto-sp13_S_contig19470.6257.1|Name=mRNA_Ecto-sp13_S_contig19470.6257.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=593bp
MLPDDLVGPDHGCTDRCRRQKWAGMRFLHNLVHQPPYRYHSLACALEATP
GQGCTVSKAAFVARMIAAYRFDRKLRMDTRLRSLYECYEGARAGAVDFRD
ILCCTIVLRRFKDIRDNPLKLFRDLILLYSDDEGRVVQRQDALRVVRIGA
LHGGHILQTSNRLDKYLAEEAGPRGLKPTFRDLDITFLMQTIEANPSILV
AFRTQLWQRIPEAWRLGVLQAVEAMGFEKASSGAMAMKERRAVRWYSKTL
SRRIIVDWKIFRNRAKQIRAQRERIQNVRRRHTLRAWHASAAIHVLHRKR
RGVADQYGRICTLQRYFYSIVKYVEVNKRLAAMAWKFSKQGKLVVAGVGL
LRGVLRKRSMRLALQAWCETASLMNAWGFAVDLAGERLCRRVFAALRDTV
RAAVAARRAEDEAEMRAAALAENIEEAERERVLLAELAEERKKRQKAEEK
AALMATRAAEHIEKIEAARAGSVARDAEVLQRQREARKRRVYENRVKVKN
EFDATWEVKLRETVEKEMELAKEWLESDPEAPFKVQKEMKILQRKFYAAP
LPETAELERALRDPANYIFAHMANLLYKENKTLQMFFNQFDKE
back to top

mRNA from alignment at Ecto-sp13_S_contig19470:458..2715-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19470.6257.1 ID=mRNA_Ecto-sp13_S_contig19470.6257.1|Name=mRNA_Ecto-sp13_S_contig19470.6257.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19470:458..2715- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCCCCGACGATCTCGTCGGGCCGGATCACGGATGTACTGATCGATG
CCGTCGTCAAAAATGGGCGGGGATGCGATTCTTGCACAACCTTGTGCACC
AACCGCCATACCGATATCACAGTCTCGCGTGCGCATTGGAAGCTACGCCG
GGGCAGGGATGCACGGTCAGCAAAGCCGCGTTCGTGGCAAGGATGATCGC
AGCATATCGGTTTGATCGCAAGTTGAGGATGGACACGCGGCTTCGATCGC
TCTACGAGTGCTATGAAGGGGCCCGTGCTGGTGCGGTGGACTTTCGCGAC
ATCTTGTGTTGCACGATTGTGCTTCGGAGATTCAAAGACATCCGTGACAA
CCCACTCAAGTTGTTTCGAGACCTGATCCTCTTGTACTCGGATGACGAGG
GGCGGGTCGTCCAAAGGCAGGACGCTCTTAGAGTGGTGAGGATAGGTGCA
CTACACGGAGGCCATATCTTGCAGACAAGCAACCGCCTGGACAAGTACCT
CGCCGAGGAGGCAGGCCCACGAGGCCTCAAACCCACCTTCCGCGACTTAG
ACATCACCTTCTTGATGCAAACAATCGAGGCGAACCCCTCAATTCTGGTC
GCGTTTCGAACTCAGCTTTGGCAGCGTATTCCCGAAGCTTGGCGATTGGG
CGTGCTACAAGCGGTGGAAGCGATGGGTTTCGAAAAAGCGAGCTCCGGCG
CGATGGCAATGAAAGAGCGCCGCGCGGTCCGGTGGTACTCCAAGACCCTG
TCGCGTCGAATCATCGTCGACTGGAAAATCTTCAGGAACCGAGCGAAGCA
GATCAGAGCCCAGCGAGAACGCATACAGAACGTTCGACGCCGCCATACCC
TTCGCGCTTGGCACGCTTCGGCGGCCATCCACGTTCTTCATCGCAAGCGC
CGCGGGGTCGCCGACCAGTACGGGCGAATCTGCACGCTCCAGCGCTACTT
CTACAGCATCGTCAAGTACGTGGAGGTGAACAAGAGGCTCGCAGCCATGG
CCTGGAAGTTCAGCAAGCAGGGCAAGCTGGTAGTGGCCGGTGTGGGCTTG
CTGCGCGGGGTTCTGCGGAAACGGTCCATGCGGCTGGCCCTGCAGGCGTG
GTGCGAGACGGCTTCTCTTATGAACGCGTGGGGGTTTGCGGTGGACCTCG
CCGGGGAACGGCTCTGTCGTCGGGTGTTCGCGGCGCTGAGGGACACCGTG
AGGGCCGCGGTGGCGGCGAGGCGTGCCGAGGATGAAGCCGAGATGCGGGC
GGCGGCTTTAGCCGAGAATATTGAGGTGGGTGGTGTGCTATGTTCCGGCA
AGAAGTGTAGCAAGAAGTGTAGTCTATTCATGGGTCGAGCACTTCAAAGT
ATTGCGAAAAATTTGGTCGACATCGCGCGAAGCCACTACCGTGATTCGCA
GAGCGGTGAATGATGTCTTTGTCCTAGCAATCAATGCTGCACACCTTGGA
ATGCACCTACACTACGTACGGCGTTGCCGTATGAAGGGCGTGGTAAAGGT
GAATTCAGACAAGGTGCTCTATCATTTCGCAGCAGCAGAGACGTCCTGGC
CCCTATCAAGTTCCTTGTAAGCGCCGAACTACATGTGCTTGGAGAGCTCC
CTACGAACCCGCCTTTTGCATACAACAGCATACGAGGGAGGTACACATGT
TCTACTTGCCGCTGGTCTCTTTCGGCTTGTGTGTGTCGTTTGAAAGGTAT
GCTTGGCGTGCGTACATTCCCCCGCCGCCTTTCAATTGCTTCCCTTCCGG
GCAGGAAGCGGAGAGAGAGAGAGTGCTTCTGGCTGAGCTCGCGGAAGAGA
GGAAGAAGCGCCAAAAGGCCGAGGAGAAAGCGGCGCTTATGGCCACACGT
GCCGCCGAACACATCGAGAAGATCGAGGCGGCCCGGGCCGGATCCGTGGC
CAGAGACGCCGAGGTGCTGCAGCGGCAGAGAGAAGCTAGAAAGCGAAGGG
TTTATGAGAACAGGGTCAAGGTCAAGAACGAGTTTGACGCGACGTGGGAG
GTAAAGCTGAGGGAGACCGTCGAGAAAGAGATGGAGTTGGCCAAGGAGTG
GCTCGAGTCGGACCCCGAGGCACCGTTCAAGGTCCAGAAGGAGATGAAGA
TCCTCCAGAGGAAGTTCTACGCGGCGCCGCTACCGGAGACGGCAGAGCTG
GAGAGGGCGCTGAGGGACCCAGCCAACTACATCTTCGCACACATGGCCAA
CCTGCTCTACAAGGAGAACAAGACGCTTCAAATGTTCTTCAACCAGTTCG
ACAAGGAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19470:458..2715-

>mRNA_Ecto-sp13_S_contig19470.6257.1 ID=mRNA_Ecto-sp13_S_contig19470.6257.1|Name=mRNA_Ecto-sp13_S_contig19470.6257.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1779bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19470:458..2715- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCCCCGACGATCTCGTCGGGCCGGATCACGGATGTACTGATCGATG
CCGTCGTCAAAAATGGGCGGGGATGCGATTCTTGCACAACCTTGTGCACC
AACCGCCATACCGATATCACAGTCTCGCGTGCGCATTGGAAGCTACGCCG
GGGCAGGGATGCACGGTCAGCAAAGCCGCGTTCGTGGCAAGGATGATCGC
AGCATATCGGTTTGATCGCAAGTTGAGGATGGACACGCGGCTTCGATCGC
TCTACGAGTGCTATGAAGGGGCCCGTGCTGGTGCGGTGGACTTTCGCGAC
ATCTTGTGTTGCACGATTGTGCTTCGGAGATTCAAAGACATCCGTGACAA
CCCACTCAAGTTGTTTCGAGACCTGATCCTCTTGTACTCGGATGACGAGG
GGCGGGTCGTCCAAAGGCAGGACGCTCTTAGAGTGGTGAGGATAGGTGCA
CTACACGGAGGCCATATCTTGCAGACAAGCAACCGCCTGGACAAGTACCT
CGCCGAGGAGGCAGGCCCACGAGGCCTCAAACCCACCTTCCGCGACTTAG
ACATCACCTTCTTGATGCAAACAATCGAGGCGAACCCCTCAATTCTGGTC
GCGTTTCGAACTCAGCTTTGGCAGCGTATTCCCGAAGCTTGGCGATTGGG
CGTGCTACAAGCGGTGGAAGCGATGGGTTTCGAAAAAGCGAGCTCCGGCG
CGATGGCAATGAAAGAGCGCCGCGCGGTCCGGTGGTACTCCAAGACCCTG
TCGCGTCGAATCATCGTCGACTGGAAAATCTTCAGGAACCGAGCGAAGCA
GATCAGAGCCCAGCGAGAACGCATACAGAACGTTCGACGCCGCCATACCC
TTCGCGCTTGGCACGCTTCGGCGGCCATCCACGTTCTTCATCGCAAGCGC
CGCGGGGTCGCCGACCAGTACGGGCGAATCTGCACGCTCCAGCGCTACTT
CTACAGCATCGTCAAGTACGTGGAGGTGAACAAGAGGCTCGCAGCCATGG
CCTGGAAGTTCAGCAAGCAGGGCAAGCTGGTAGTGGCCGGTGTGGGCTTG
CTGCGCGGGGTTCTGCGGAAACGGTCCATGCGGCTGGCCCTGCAGGCGTG
GTGCGAGACGGCTTCTCTTATGAACGCGTGGGGGTTTGCGGTGGACCTCG
CCGGGGAACGGCTCTGTCGTCGGGTGTTCGCGGCGCTGAGGGACACCGTG
AGGGCCGCGGTGGCGGCGAGGCGTGCCGAGGATGAAGCCGAGATGCGGGC
GGCGGCTTTAGCCGAGAATATTGAGGAAGCGGAGAGAGAGAGAGTGCTTC
TGGCTGAGCTCGCGGAAGAGAGGAAGAAGCGCCAAAAGGCCGAGGAGAAA
GCGGCGCTTATGGCCACACGTGCCGCCGAACACATCGAGAAGATCGAGGC
GGCCCGGGCCGGATCCGTGGCCAGAGACGCCGAGGTGCTGCAGCGGCAGA
GAGAAGCTAGAAAGCGAAGGGTTTATGAGAACAGGGTCAAGGTCAAGAAC
GAGTTTGACGCGACGTGGGAGGTAAAGCTGAGGGAGACCGTCGAGAAAGA
GATGGAGTTGGCCAAGGAGTGGCTCGAGTCGGACCCCGAGGCACCGTTCA
AGGTCCAGAAGGAGATGAAGATCCTCCAGAGGAAGTTCTACGCGGCGCCG
CTACCGGAGACGGCAGAGCTGGAGAGGGCGCTGAGGGACCCAGCCAACTA
CATCTTCGCACACATGGCCAACCTGCTCTACAAGGAGAACAAGACGCTTC
AAATGTTCTTCAACCAGTTCGACAAGGAG
back to top