mRNA_Ecto-sp13_S_contig19466.6255.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19466.6255.1
Unique NamemRNA_Ecto-sp13_S_contig19466.6255.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19466.6255.1 vs. uniprot
Match: D8LKN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKN4_ECTSI)

HSP 1 Score: 270 bits (690), Expect = 1.170e-77
Identity = 295/379 (77.84%), Postives = 299/379 (78.89%), Query Frame = 1 
Query:    1 ARAEVDELRAKVAAVEEMVASANRERDEAVLTNTDAAAAAAEVEA-----------GLKGELEASQAELEGEXXXVASLGQELDQAFKDKXXXXXRADAASQDLATSSAALRAERDALSARLATAEEEAAXXXXXXXXXXXXXXXXXXXXXX-VGDGERPXXXXXXXXXXXXGQQEEEIAALRARCEELEIGAAVASEKIAALEARVRDADAASPSSTAEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ-----ELLEKRLREAEEAAKEAAREMEGVVAGLREEQAALNSRVLELTAEVAAAREALSASQESLEREREDGLRQARVLTERAEAAEQAAATAXXXXAAAGQERXXD 1086
            ARAEVDELRAKVAAV EMVASANRERDEAV                          GLKGELEAS+AELEGE   VA LGQEL QAFKDK     RADAASQDLATSSAALRAERDALSARLATAE    XXXXXXXXXXXXXXXXX      VGDGERP  XXXXXXXXXX      IAALRARCEELEIGAAVASEKIAALEARVRD DA S SSTA D XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  +     ELL+KRLRE +EAAKE ARE EGVVAGLREEQAALNSRVLELTAEVAAAREALSASQE LEREREDGLRQAR LTERAEAAEQAA  A    AAAGQER  D
Sbjct:  295 ARAEVDELRAKVAAVGEMVASANRERDEAVXXXXXXXXXXXXXXXXXXXXXXXXXXGLKGELEASRAELEGERERVACLGQELRQAFKDKEEAEARADAASQDLATSSAALRAERDALSARLATAEXXXXXXXXXXXXXXXXXXXXXETEAPSVGDGERPEEXXXXXXXXXXXXX---IAALRARCEELEIGAAVASEKIAALEARVRDVDAVS-SSTAGDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEESVAQLELLKKRLREVKEAAKEPAREKEGVVAGLREEQAALNSRVLELTAEVAAAREALSASQECLEREREDGLRQARQLTERAEAAEQAAEEA----AAAGQERERD 665
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BLAST of mRNA_Ecto-sp13_S_contig19466.6255.1 vs. uniprot
Match: A0A6H5KSR4_9PHAE (GRIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSR4_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 7.660e-56
Identity = 194/280 (69.29%), Postives = 200/280 (71.43%), Query Frame = 1 
Query:  256 ADAASQDLATSSAALRAERDALSARLATAEEEAAXXXXXXXXXXXXXXXXXXXXXX---VGDGERPXXXXXXXXXXXXGQQEEEIAALRARCEELEIGAAVASEKIAALEARVRDADAASPSSTAEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQELLEKRLREAEEAAKEAAREMEGVVAGLREEQAALNSRVLELTAEVAAAREALSASQESLEREREDGLRQARVLTERAEAAEQAAATAXXXXAAAGQERXXD 1086
            ADAASQDLATSSAALRAERDALSARLAT EEE  XXXXXXXXXXXXXXXX         VGDGE  XXXXXXXXXXX    EEE+AALR RC ELEIGAAVASEKIAALEARVRDADA SPSSTAED                                                  +ELLEKRLREAEEA+KEAARE EGVVAGLREEQAALNSRVLELTAEVA AREALS+SQ+SLEREREDGLR+ARVLTERAEAAEQAAAT XXXX    QER  D
Sbjct:  512 ADAASQDLATSSAALRAERDALSARLATVEEEXXXXXXXXXXXXXXXXXXQPPETEAPSVGDGEXXXXXXXXXXXXXA---EEELAALRTRCAELEIGAAVASEKIAALEARVRDADAVSPSSTAEDAAAAPEEASGGDRGQDEDGDAAATVVEATMPGVTSEAATDTREEESGAQ-RELLEKRLREAEEASKEAAREKEGVVAGLREEQAALNSRVLELTAEVATAREALSSSQKSLEREREDGLRKARVLTERAEAAEQAAATXXXXXXXXXQERERD 787
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19466.6255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKN4_ECTSI1.170e-7777.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KSR4_9PHAE7.660e-5669.29GRIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19466contigEcto-sp13_S_contig19466:1..3233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1290
Hectar predicted targeting categoryother localisation
Exons4
Cds size1290
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462987.3626938-CDS-Ecto-sp13_S_contig19466:0..2371681462987.3626938-CDS-Ecto-sp13_S_contig19466:0..237Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19466 1..237 +
1681462987.374867-CDS-Ecto-sp13_S_contig19466:1110..14341681462987.374867-CDS-Ecto-sp13_S_contig19466:1110..1434Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19466 1111..1434 +
1681462987.3832347-CDS-Ecto-sp13_S_contig19466:2087..24021681462987.3832347-CDS-Ecto-sp13_S_contig19466:2087..2402Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19466 2088..2402 +
1681462987.3935802-CDS-Ecto-sp13_S_contig19466:2819..32331681462987.3935802-CDS-Ecto-sp13_S_contig19466:2819..3233Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19466 2820..3233 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19466.6255.1prot_Ecto-sp13_S_contig19466.6255.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19466 1..3233 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19466.6255.1

>prot_Ecto-sp13_S_contig19466.6255.1 ID=prot_Ecto-sp13_S_contig19466.6255.1|Name=mRNA_Ecto-sp13_S_contig19466.6255.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=430bp
ARAEVDELRAKVAAVEEMVASANRERDEAVLTNTDAAAAAAEVEAGLKGE
LEASQAELEGERERVASLGQELDQAFKDKEEAEARADAASQDLATSSAAL
RAERDALSARLATAEEEAAAAMARELEEEEEPQPPETEAPSVGDGERPEE
AAAAAAAADAGQQEEEIAALRARCEELEIGAAVASEKIAALEARVRDADA
ASPSSTAEDAAAAPEEEPSGGDGGQDEDGDAATTAVETTMAGVTSAAATD
SGEEESGAQQELLEKRLREAEEAAKEAAREMEGVVAGLREEQAALNSRVL
ELTAEVAAAREALSASQESLEREREDGLRQARVLTERAEAAEQAAATAAE
EAAAAGQERARDLEEQREKAAAAAAEAAAAAEAAGQERERGLLEQMEKAA
ASASASARAVAAAAAAAEAEEALGTLRQEK
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mRNA from alignment at Ecto-sp13_S_contig19466:1..3233+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19466.6255.1 ID=mRNA_Ecto-sp13_S_contig19466.6255.1|Name=mRNA_Ecto-sp13_S_contig19466.6255.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3233bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19466:1..3233+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTAGGGCGGAGGTCGATGAGCTTCGAGCAAAGGTGGCGGCCGTTGAGGA
GATGGTCGCCTCAGCCAACAGGGAAAGGGATGAGGCGGTGTTGACCAACA
CCGATGCGGCGGCGGCGGCAGCGGAGGTGGAGGCCGGGTTGAAGGGAGAG
CTGGAAGCATCCCAGGCGGAGCTGGAAGGAGAGAGAGAGAGGGTAGCCTC
GCTGGGGCAGGAGCTCGACCAAGCCTTCAAGGACAAGGTAATCAATGCGC
GGGACTTCACGAAGGAGGATAGTGGCGTAGCACTTTTTTTTTCTCGTTAT
GTCGTCGATGTCGAGGTATCAGCGCGGAGGTTAACGAGTTGTTCTCCGCT
CGTGGTGACAGGGGCGTGGTCGGCCTTGTCGGACGGGAAAAGATGCGGTT
GTATTTTTGATTGCGGGGCAGCAAGGAAGGCGGTCATGGTTATTGTTGGC
GGTTTCTTGGTGCCAAGGGGGGAGGCTTTTTCGTTTTTTCGAGCTCTATG
AAGCGCAGGCGAGATGTTGTTGACTGCCTTCCTAAAGCAACCGCTGTTGG
GTTTGTCCGTCGCTGAAAGAATCGCGACTCGTTTTGGCGGTGGTGCCTGG
GTTTTCTAAAAGAGACGGCACCCTTGAAGAAACTACCGATGCCGATGCCG
ATCCTCCCGTTGAGCGCGTGCGACGTCGCGAACATGCCACCTTTCCTCTG
TCCCCGCCCGCTAAATTTACACGTTCCCTGCACCACAGGAGGAAGGAAGG
TGGGCATGGAGAACAAAACAGATTAGTAGAACAGATCCTGTGCGAACCCC
AGCGGTGTGTAGACTTGCGCCGGAATAGATGGGATGAACACAAACACACT
GCCGTGGTTGCGTCCAGAAGGCGGAGTACCATTTGTGCTGCTGCTGCTTG
TTCCTCCGCGATCGCCATCTGGTAGCCTGACGTTTTACACATGAAAGTAA
TTTCAGTCCCAGTCTTCAATTATGCTTTTGATAATGCTTATGTTGGAAAC
GGGAAATACTTTCATTTCATTGAAAGACACTAAATTATTTACGGGTCTTT
TCGAAGTTTATTTATATGTTTTCTTTTTGCGGCGCTCGTTGTGGTGACGA
AACGAACCAGGAGGAGGCCGAAGCGCGCGCCGACGCCGCGTCGCAAGACC
TCGCGACCAGCTCGGCGGCGCTACGGGCCGAGCGCGACGCTCTGAGCGCT
CGCCTCGCCACCGCCGAGGAAGAAGCGGCGGCGGCAATGGCACGGGAACT
GGAGGAGGAGGAGGAGCCGCAGCCGCCGGAAACGGAGGCGCCTTCAGTGG
GAGACGGCGAGCGGCCGGAGGAGGCGGCGGCGGCGGCGGCGGCGGCGGAC
GCTGGGCAGCAAGAGGAAGAAATAGCGGCCTTGCGCGCGAGGTGCGAGGA
GCTGGAGATCGGAGCCGCGGTGGCCTCCGAAAAGGTGAGGCAAGACGGTT
TGCATGTTTCTGCGGTACAATGGCTGGTATGGCGCCGAAAGGCCTGCAGA
CTGGCGCTCGTATAGATGGGACGAACACACACACAAAAAGCGTGCCGGGG
GTATGTTTCCCGGATATATACGCGTAGACGACTGTGAGTTCGGTGATATC
CTACCCGAAAGTTGCAAGCCCTACACAGCGTATGAAATGGCTGGTGCGCT
GCGGCTGCTGGCCGGTCTTGCGTGCACTCGTGAGATGACCGGGTGTCTTT
TCTTCCTCGCCTTTGGAGATTCCACACTCCCTCACGGACAGTCTCATCAG
GCCAAAGTGATGTGACAAACCCTTTGAGACGTTTCCTTCATCTCGCTCCT
CTCCTTGAGTATATCGTCGTGCCTGTTTTTTTTTTCTTAACATGACACAA
CGACATCAATCTCTTTTTTACAAATAAACGATAATCTAAATTAGATCAGC
AATGAATCCATAGCGTCAGCGGAAGCTACCTGTATTTCCACGATTTCGCG
AGCAGCATACAGCGATGATATCTCCCCTGTGGGTAACAGCCTCAACATGA
TAGTTTGTTTTTGTGTTTGTGTGTGTTTTGTGTGTTGGTGCGCGGGTGTG
CTGCTGGGACTCCTCCCCCCCCCCCCTGCGTTAATAGATCGCTGCCCTAG
AGGCAAGGGTCAGGGACGCGGACGCCGCTTCACCATCATCCACGGCAGAG
GATGCCGCCGCTGCTCCGGAAGAAGAACCCTCCGGGGGCGATGGGGGTCA
AGACGAAGACGGGGATGCCGCCACCACTGCCGTCGAGACGACGATGGCGG
GGGTCACATCCGCGGCGGCGACGGATAGCGGGGAAGAGGAGAGCGGGGCT
CAGCAGGAGCTGCTGGAGAAGCGTTTGCGTGAGGCGGAGGAGGCCGCTAA
GGAAGCCGCTAGAGAGATGGAAGGCGTGGTTGCTGGTCTGCGCGAAGAGC
AGGTGGGAAGGGTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTATTGTTG
CGTTAAGGATAGACGTACCCTTCGTAGCTCAGTAGTTGAGAGGACCGTCG
ACTCAAGAAAAGTGAGTCGGCGCGGCTCTGGATCGATTTCGGCAGCAGTA
CCAGTACTCCTGCAGGCATGCGTCGTGGTTTTCACCCGCTTGCACTCTTG
TTTGCGCCGGGGGGGGCTTCGGCGTCAGCCTGTCAGCGATTCTCCGCCCA
GAAGCTGAATATGCATACCTGTAGTTGGTGGCAGAGGCTTGGCAGACTAG
GCTATTACAGCATTCTTGCAGGGTAAGCGTCCCGACACCATCGCACTCTC
CACACGACGACGTTGCGCACCGGCACATCGCCGCGCTGCCCCCCAACTCC
CCGTCCAAATGCCACCCAGGCCGCGTTGAACTCCCGCGTACTCGAGCTCA
CCGCCGAGGTTGCGGCCGCGAGAGAAGCGTTGTCGGCGTCGCAGGAGTCT
CTGGAGAGGGAGAGGGAGGACGGGCTCCGCCAGGCCCGGGTACTGACTGA
GCGCGCCGAGGCTGCGGAGCAAGCCGCGGCTACGGCGGCGGAAGAAGCGG
CAGCGGCGGGGCAAGAGCGGGCGCGGGACCTCGAGGAACAGAGGGAGAAG
GCGGCGGCTGCGGCGGCGGAAGCAGCGGCAGCCGCGGAAGCGGCGGGACA
GGAGCGGGAGCGAGGCCTTTTGGAACAGATGGAGAAGGCGGCGGCGAGTG
CGAGTGCGAGTGCTAGGGCGGTGGCGGCGGCGGCGGCGGCGGCGGAGGCG
GAAGAGGCCTTGGGGACGTTGCGGCAGGAGAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19466:1..3233+

>mRNA_Ecto-sp13_S_contig19466.6255.1 ID=mRNA_Ecto-sp13_S_contig19466.6255.1|Name=mRNA_Ecto-sp13_S_contig19466.6255.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1290bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19466:1..3233+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTAGGGCGGAGGTCGATGAGCTTCGAGCAAAGGTGGCGGCCGTTGAGGA
GATGGTCGCCTCAGCCAACAGGGAAAGGGATGAGGCGGTGTTGACCAACA
CCGATGCGGCGGCGGCGGCAGCGGAGGTGGAGGCCGGGTTGAAGGGAGAG
CTGGAAGCATCCCAGGCGGAGCTGGAAGGAGAGAGAGAGAGGGTAGCCTC
GCTGGGGCAGGAGCTCGACCAAGCCTTCAAGGACAAGGAGGAGGCCGAAG
CGCGCGCCGACGCCGCGTCGCAAGACCTCGCGACCAGCTCGGCGGCGCTA
CGGGCCGAGCGCGACGCTCTGAGCGCTCGCCTCGCCACCGCCGAGGAAGA
AGCGGCGGCGGCAATGGCACGGGAACTGGAGGAGGAGGAGGAGCCGCAGC
CGCCGGAAACGGAGGCGCCTTCAGTGGGAGACGGCGAGCGGCCGGAGGAG
GCGGCGGCGGCGGCGGCGGCGGCGGACGCTGGGCAGCAAGAGGAAGAAAT
AGCGGCCTTGCGCGCGAGGTGCGAGGAGCTGGAGATCGGAGCCGCGGTGG
CCTCCGAAAAGATCGCTGCCCTAGAGGCAAGGGTCAGGGACGCGGACGCC
GCTTCACCATCATCCACGGCAGAGGATGCCGCCGCTGCTCCGGAAGAAGA
ACCCTCCGGGGGCGATGGGGGTCAAGACGAAGACGGGGATGCCGCCACCA
CTGCCGTCGAGACGACGATGGCGGGGGTCACATCCGCGGCGGCGACGGAT
AGCGGGGAAGAGGAGAGCGGGGCTCAGCAGGAGCTGCTGGAGAAGCGTTT
GCGTGAGGCGGAGGAGGCCGCTAAGGAAGCCGCTAGAGAGATGGAAGGCG
TGGTTGCTGGTCTGCGCGAAGAGCAGGCCGCGTTGAACTCCCGCGTACTC
GAGCTCACCGCCGAGGTTGCGGCCGCGAGAGAAGCGTTGTCGGCGTCGCA
GGAGTCTCTGGAGAGGGAGAGGGAGGACGGGCTCCGCCAGGCCCGGGTAC
TGACTGAGCGCGCCGAGGCTGCGGAGCAAGCCGCGGCTACGGCGGCGGAA
GAAGCGGCAGCGGCGGGGCAAGAGCGGGCGCGGGACCTCGAGGAACAGAG
GGAGAAGGCGGCGGCTGCGGCGGCGGAAGCAGCGGCAGCCGCGGAAGCGG
CGGGACAGGAGCGGGAGCGAGGCCTTTTGGAACAGATGGAGAAGGCGGCG
GCGAGTGCGAGTGCGAGTGCTAGGGCGGTGGCGGCGGCGGCGGCGGCGGC
GGAGGCGGAAGAGGCCTTGGGGACGTTGCGGCAGGAGAAG
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