mRNA_Ecto-sp13_S_contig19446.6247.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19446.6247.1
Unique NamemRNA_Ecto-sp13_S_contig19446.6247.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19446.6247.1 vs. uniprot
Match: D8LUA3_ECTSI (Serine hydroxymethyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LUA3_ECTSI)

HSP 1 Score: 373 bits (957), Expect = 3.080e-126
Identity = 183/186 (98.39%), Postives = 186/186 (100.00%), Query Frame = 1 
Query:    1 QVRQRDSLVLIASENFTSKSVYDALGSIMSNKYSEGYPGARYYGGNEQIDKVESLCQKRALEAFDLDPEMWGVNVQTLSGSPANFQAYTAVLQPHDRIMSLDLPHGGHLSHGYQTDTKKISMVSSFFETFPYRLDESTGQIDYDTMAANAKLFRPKLIVAGASAYSRNIDYARMKEVADASGAWLL 558
            +VRQRDSLVLIASENFTSKSVYDALGSIMSNKYSEGYPGARYYGGNEQIDKVESLCQKRALEAFDLDPE+WGVNVQTLSGSPANFQAYTAVLQPHDRIMSLDLPHGGHLSHGYQTDTKKISMVSSF+ETFPYRLDESTGQIDYDTMAANAKLFRPKLIVAGASAYSRNIDYARMKEVADASGAWLL
Sbjct:   44 KVRQRDSLVLIASENFTSKSVYDALGSIMSNKYSEGYPGARYYGGNEQIDKVESLCQKRALEAFDLDPELWGVNVQTLSGSPANFQAYTAVLQPHDRIMSLDLPHGGHLSHGYQTDTKKISMVSSFYETFPYRLDESTGQIDYDTMAANAKLFRPKLIVAGASAYSRNIDYARMKEVADASGAWLL 229
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BLAST of mRNA_Ecto-sp13_S_contig19446.6247.1 vs. uniprot
Match: A0A835YWD3_9STRA (Serine hydroxymethyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWD3_9STRA)

HSP 1 Score: 331 bits (848), Expect = 1.210e-109
Identity = 160/184 (86.96%), Postives = 173/184 (94.02%), Query Frame = 1 
Query:    7 RQRDSLVLIASENFTSKSVYDALGSIMSNKYSEGYPGARYYGGNEQIDKVESLCQKRALEAFDLDPEMWGVNVQTLSGSPANFQAYTAVLQPHDRIMSLDLPHGGHLSHGYQTDTKKISMVSSFFETFPYRLDESTGQIDYDTMAANAKLFRPKLIVAGASAYSRNIDYARMKEVADASGAWLL 558
            RQRDSLVLIASENFTSK+V+DALGS+MSNKYSEGYPGARYYGGNE IDKVES+CQ RAL+AF LDP  WGVNVQTLSGSPANFQAYTAVLQPHDRIMSLDLPHGGHLSHGYQTDTKKISMVS +FETFPYRL+E+TG IDYD +  NAKLFRPKLIVAGASAYSR IDYARM+++ADASGA+LL
Sbjct:   55 RQRDSLVLIASENFTSKAVFDALGSVMSNKYSEGYPGARYYGGNENIDKVESMCQSRALQAFGLDPAKWGVNVQTLSGSPANFQAYTAVLQPHDRIMSLDLPHGGHLSHGYQTDTKKISMVSLYFETFPYRLNETTGTIDYDKLEENAKLFRPKLIVAGASAYSRCIDYARMRKIADASGAYLL 238
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BLAST of mRNA_Ecto-sp13_S_contig19446.6247.1 vs. uniprot
Match: A0A7S3M9R5_9STRA (Serine hydroxymethyltransferase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M9R5_9STRA)

HSP 1 Score: 325 bits (832), Expect = 2.150e-107
Identity = 158/186 (84.95%), Postives = 172/186 (92.47%), Query Frame = 1 
Query:    1 QVRQRDSLVLIASENFTSKSVYDALGSIMSNKYSEGYPGARYYGGNEQIDKVESLCQKRALEAFDLDPEMWGVNVQTLSGSPANFQAYTAVLQPHDRIMSLDLPHGGHLSHGYQTDTKKISMVSSFFETFPYRLDESTGQIDYDTMAANAKLFRPKLIVAGASAYSRNIDYARMKEVADASGAWLL 558
            ++RQRDSLVLIASENFTSKSV+DALGS+MSNKYSEGYPGARYYGGNEQIDK E LCQKRALEAF+LDPE WGVNVQ+LSGSPANFQAY AVL PHDRIM+LDLPHGGHLSHGYQTDTKKIS VS FFETFPYRL+E+TG IDYD M  NAKL+RPKLIVAGASAY+R IDY RM++VAD SGA+LL
Sbjct:   47 KIRQRDSLVLIASENFTSKSVFDALGSVMSNKYSEGYPGARYYGGNEQIDKAELLCQKRALEAFNLDPEKWGVNVQSLSGSPANFQAYAAVLAPHDRIMALDLPHGGHLSHGYQTDTKKISAVSVFFETFPYRLNETTGVIDYDKMEENAKLYRPKLIVAGASAYARLIDYERMRKVADNSGAFLL 232
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BLAST of mRNA_Ecto-sp13_S_contig19446.6247.1 vs. uniprot
Match: W7TN09_9STRA (Serine hydroxymethyltransferase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TN09_9STRA)

HSP 1 Score: 319 bits (817), Expect = 4.870e-105
Identity = 154/186 (82.80%), Postives = 169/186 (90.86%), Query Frame = 1 
Query:    1 QVRQRDSLVLIASENFTSKSVYDALGSIMSNKYSEGYPGARYYGGNEQIDKVESLCQKRALEAFDLDPEMWGVNVQTLSGSPANFQAYTAVLQPHDRIMSLDLPHGGHLSHGYQTDTKKISMVSSFFETFPYRLDESTGQIDYDTMAANAKLFRPKLIVAGASAYSRNIDYARMKEVADASGAWLL 558
            +VRQR+SLVLIASENFTSKSV+DALGS+MSNKYSEGYPGARYYGGNE IDKVESLCQ+RAL AF+LDP  WGVNVQTLSGSPANFQAYTAVL PHDRIM+LDLPHGGHLSHGYQTD+KKIS VS FFETFPYRLDE TG+IDYD M  NA LFRPKL+VAGASAY+R IDY RM+++AD   A+LL
Sbjct:   56 KVRQRESLVLIASENFTSKSVFDALGSVMSNKYSEGYPGARYYGGNENIDKVESLCQQRALAAFNLDPARWGVNVQTLSGSPANFQAYTAVLAPHDRIMALDLPHGGHLSHGYQTDSKKISAVSIFFETFPYRLDERTGRIDYDKMEENAALFRPKLLVAGASAYARTIDYERMRKIADKHNAYLL 241
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BLAST of mRNA_Ecto-sp13_S_contig19446.6247.1 vs. uniprot
Match: A0A7S2C4R3_9STRA (Serine hydroxymethyltransferase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C4R3_9STRA)

HSP 1 Score: 312 bits (799), Expect = 6.490e-103
Identity = 148/183 (80.87%), Postives = 165/183 (90.16%), Query Frame = 1 
Query:   10 QRDSLVLIASENFTSKSVYDALGSIMSNKYSEGYPGARYYGGNEQIDKVESLCQKRALEAFDLDPEMWGVNVQTLSGSPANFQAYTAVLQPHDRIMSLDLPHGGHLSHGYQTDTKKISMVSSFFETFPYRLDESTGQIDYDTMAANAKLFRPKLIVAGASAYSRNIDYARMKEVADASGAWLL 558
            QRDSL+LIASEN TSKSVYDALGS+MSNKYSEGYPGARYYGGNEQIDKVE++CQ RALEAF+LDPE WGVNVQ+LSGSPANFQ +TAVL+PH RIM LDLPHGGHLSHGYQT TKKIS VS +FE  PYRLDESTG IDYDT+ ANA L+RP+L++AGASAYSR IDY RM+++AD  GAWLL
Sbjct:    1 QRDSLILIASENLTSKSVYDALGSVMSNKYSEGYPGARYYGGNEQIDKVETMCQNRALEAFNLDPEKWGVNVQSLSGSPANFQVFTAVLEPHGRIMGLDLPHGGHLSHGYQTATKKISAVSVYFEQLPYRLDESTGVIDYDTLEANAGLYRPQLLIAGASAYSRLIDYERMRKIADQHGAWLL 183
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BLAST of mRNA_Ecto-sp13_S_contig19446.6247.1 vs. uniprot
Match: A0A7S2B3N4_9STRA (Serine hydroxymethyltransferase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B3N4_9STRA)

HSP 1 Score: 313 bits (802), Expect = 9.220e-103
Identity = 149/184 (80.98%), Postives = 167/184 (90.76%), Query Frame = 1 
Query:    7 RQRDSLVLIASENFTSKSVYDALGSIMSNKYSEGYPGARYYGGNEQIDKVESLCQKRALEAFDLDPEMWGVNVQTLSGSPANFQAYTAVLQPHDRIMSLDLPHGGHLSHGYQTDTKKISMVSSFFETFPYRLDESTGQIDYDTMAANAKLFRPKLIVAGASAYSRNIDYARMKEVADASGAWLL 558
            RQR+SLVLIASENFTSK+V+DALGS+MSNKYSEGYPGARYYGGNE ID+VE +CQKRALEAFDLDPE WGVNVQ+LSGSPANFQAY AVLQPHDRIM+LDLPHGGHLSHGYQT  KKIS VS F+ETFPYRL+E TG IDYD M A+AKL+RPKLIVAGASAYSR IDY+R++E+ D   A++L
Sbjct:   46 RQRNSLVLIASENFTSKAVFDALGSVMSNKYSEGYPGARYYGGNENIDQVEEICQKRALEAFDLDPEKWGVNVQSLSGSPANFQAYAAVLQPHDRIMALDLPHGGHLSHGYQTPNKKISAVSVFYETFPYRLNEETGSIDYDAMEASAKLYRPKLIVAGASAYSRLIDYSRIREICDEHNAYML 229
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BLAST of mRNA_Ecto-sp13_S_contig19446.6247.1 vs. uniprot
Match: F0XZQ7_AURAN (Serine hydroxymethyltransferase (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZQ7_AURAN)

HSP 1 Score: 310 bits (795), Expect = 2.950e-102
Identity = 147/186 (79.03%), Postives = 166/186 (89.25%), Query Frame = 1 
Query:    1 QVRQRDSLVLIASENFTSKSVYDALGSIMSNKYSEGYPGARYYGGNEQIDKVESLCQKRALEAFDLDPEMWGVNVQTLSGSPANFQAYTAVLQPHDRIMSLDLPHGGHLSHGYQTDTKKISMVSSFFETFPYRLDESTGQIDYDTMAANAKLFRPKLIVAGASAYSRNIDYARMKEVADASGAWLL 558
            +VRQRDSLVLIASENFTSKSV+DALGS+MSNKYSEGYP ARYYGGNE IDKVE +CQ RALE F+LDPE WGVNVQTLSGSPANFQ YTA+LQPH+R+M LDLPHGGHLSHG+QT TKKIS  S FFETFPYRLDESTG IDY+ +AANA L+RPK+I+AGASAYSR IDY  M+++ D +GA+LL
Sbjct:   20 KVRQRDSLVLIASENFTSKSVFDALGSVMSNKYSEGYPNARYYGGNEHIDKVEIMCQNRALECFNLDPEQWGVNVQTLSGSPANFQVYTALLQPHERVMGLDLPHGGHLSHGFQTPTKKISATSVFFETFPYRLDESTGLIDYEALAANAALYRPKMIIAGASAYSRLIDYDAMRKICDDNGAYLL 205
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BLAST of mRNA_Ecto-sp13_S_contig19446.6247.1 vs. uniprot
Match: A0A482UVT5_9ARCH (Serine hydroxymethyltransferase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UVT5_9ARCH)

HSP 1 Score: 302 bits (774), Expect = 3.080e-102
Identity = 143/184 (77.72%), Postives = 162/184 (88.04%), Query Frame = 1 
Query:    7 RQRDSLVLIASENFTSKSVYDALGSIMSNKYSEGYPGARYYGGNEQIDKVESLCQKRALEAFDLDPEMWGVNVQTLSGSPANFQAYTAVLQPHDRIMSLDLPHGGHLSHGYQTDTKKISMVSSFFETFPYRLDESTGQIDYDTMAANAKLFRPKLIVAGASAYSRNIDYARMKEVADASGAWLL 558
            RQRDSLVLIASENF S++V DALGS+MSNKYSEGYPGARYYGGNE IDK E LCQ RAL+ F LDP +WGVNVQ+LSGSPANFQAY AVLQPHDRIM+LDLPHGGHLSHGYQTD KKIS VS FFETFPYRL+E +G IDYD +  NA+L+RPKLIVAGASAY+R IDY RM+++ D +G++LL
Sbjct:   32 RQRDSLVLIASENFASRAVMDALGSVMSNKYSEGYPGARYYGGNENIDKAEKLCQDRALQVFGLDPNLWGVNVQSLSGSPANFQAYAAVLQPHDRIMALDLPHGGHLSHGYQTDNKKISAVSVFFETFPYRLNEKSGLIDYDRLEENARLYRPKLIVAGASAYARLIDYERMRKICDINGSYLL 215
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BLAST of mRNA_Ecto-sp13_S_contig19446.6247.1 vs. uniprot
Match: A0A7R9WF27_9STRA (Glycine hydroxymethyltransferase (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WF27_9STRA)

HSP 1 Score: 303 bits (776), Expect = 2.440e-101
Identity = 146/183 (79.78%), Postives = 163/183 (89.07%), Query Frame = 1 
Query:    1 QVRQRDSLVLIASENFTSKSVYDALGSIMSNKYSEGYPGARYYGGNEQIDKVESLCQKRALEAFDLDPEMWGVNVQTLSGSPANFQAYTAVLQPHDRIMSLDLPHGGHLSHGYQTDTKKISMVSSFFETFPYRLDESTGQIDYDTMAANAKLFRPKLIVAGASAYSRNIDYARMKEVADASGA 549
            + RQR SLVLIASENFTSK+V DALGS++SNKYSEGYPGARYYGGNE ID+VE+LCQ+RALEAFDLDPE WGVNVQ+LSGSPANFQ YTA+L+ HDRI+SLDLPHGGHLSHGYQT TKKISMVS +FE+ PYRLDESTG IDYD M  +A LFRPKLIVAGASAYSR +DY R+K +AD  GA
Sbjct:  108 KARQRSSLVLIASENFTSKAVLDALGSVLSNKYSEGYPGARYYGGNENIDRVETLCQRRALEAFDLDPEEWGVNVQSLSGSPANFQVYTALLETHDRILSLDLPHGGHLSHGYQTPTKKISMVSRYFESMPYRLDESTGLIDYDAMENSANLFRPKLIVAGASAYSRLMDYERIKSIADNVGA 290
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BLAST of mRNA_Ecto-sp13_S_contig19446.6247.1 vs. uniprot
Match: A0A7S1DCC8_CYCTE (Serine hydroxymethyltransferase n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DCC8_CYCTE)

HSP 1 Score: 305 bits (782), Expect = 1.240e-99
Identity = 147/186 (79.03%), Postives = 167/186 (89.78%), Query Frame = 1 
Query:    1 QVRQRDSLVLIASENFTSKSVYDALGSIMSNKYSEGYPGARYYGGNEQIDKVESLCQKRALEAFDLDPEMWGVNVQTLSGSPANFQAYTAVLQPHDRIMSLDLPHGGHLSHGYQTDTKKISMVSSFFETFPYRLDESTGQIDYDTMAANAKLFRPKLIVAGASAYSRNIDYARMKEVADASGAWLL 558
            + RQR+SLVLIASENFTSK+V DALGS++SNKYSEGYPGARYYGGNE ID+VE LCQKRALEAF LDPE WGVNVQ+LSGSPANFQAYTA+L+PHDRI+SLDLPHGGHLSHGYQT TKKISMVS +FE+ PYRLDE TG IDYD M  +A+LFRPKLIVAGASAYSR IDY R++ +A+  GA++L
Sbjct:   47 KARQRNSLVLIASENFTSKAVLDALGSVLSNKYSEGYPGARYYGGNENIDQVEILCQKRALEAFKLDPEEWGVNVQSLSGSPANFQAYTALLEPHDRILSLDLPHGGHLSHGYQTPTKKISMVSRYFESMPYRLDEKTGTIDYDQMETSAELFRPKLIVAGASAYSRLIDYERIRNIANNVGAYVL 232
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19446.6247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LUA3_ECTSI3.080e-12698.39Serine hydroxymethyltransferase n=2 Tax=Ectocarpus... [more]
A0A835YWD3_9STRA1.210e-10986.96Serine hydroxymethyltransferase n=1 Tax=Tribonema ... [more]
A0A7S3M9R5_9STRA2.150e-10784.95Serine hydroxymethyltransferase n=1 Tax=Spumella e... [more]
W7TN09_9STRA4.870e-10582.80Serine hydroxymethyltransferase n=3 Tax=Monodopsid... [more]
A0A7S2C4R3_9STRA6.490e-10380.87Serine hydroxymethyltransferase n=1 Tax=Florenciel... [more]
A0A7S2B3N4_9STRA9.220e-10380.98Serine hydroxymethyltransferase n=1 Tax=Dictyocha ... [more]
F0XZQ7_AURAN2.950e-10279.03Serine hydroxymethyltransferase (Fragment) n=1 Tax... [more]
A0A482UVT5_9ARCH3.080e-10277.72Serine hydroxymethyltransferase n=1 Tax=archaeon T... [more]
A0A7R9WF27_9STRA2.440e-10179.78Glycine hydroxymethyltransferase (Fragment) n=1 Ta... [more]
A0A7S1DCC8_CYCTE1.240e-9979.03Serine hydroxymethyltransferase n=1 Tax=Cyclophora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19446contigEcto-sp13_S_contig19446:429..3301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score310.8
Seed ortholog evalue4.2e-82
Seed eggNOG ortholog44056.XP_009033928.1
Preferred nameSHM2
Model size558
KEGG rclassRC00022,RC00112,RC01583,RC02958
KEGG koko:K00600,ko:K02974
KEGG ReactionR00945,R09099
KEGG Pathwayko00260,ko00460,ko00630,ko00670,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko01523,ko03010,map00260,map00460,map00630,map00670,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map01523,map03010
KEGG ModuleM00140,M00141,M00177,M00179,M00346,M00532
Hectar predicted targeting categoryother localisation
GOsGO:0001505,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003824,GO:0004372,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0005759,GO:0005829,GO:0005840,GO:0005886,GO:0005937,GO:0006082,GO:0006520,GO:0006544,GO:0006563,GO:0006730,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0007623,GO:0008150,GO:0008152,GO:0008187,GO:0008219,GO:0008266,GO:0008270,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009266,GO:0009314,GO:0009409,GO:0009416,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009536,GO:0009570,GO:0009579,GO:0009626,GO:0009628,GO:0009853,GO:0009987,GO:0010035,GO:0010038,GO:0010319,GO:0012501,GO:0016020,GO:0016053,GO:0016740,GO:0016741,GO:0016742,GO:0017144,GO:0019752,GO:0019866,GO:0022626,GO:0030427,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031976,GO:0031984,GO:0032991,GO:0033554,GO:0034050,GO:0042133,GO:0042221,GO:0042995,GO:0043094,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043332,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044455,GO:0044463,GO:0044464,GO:0045087,GO:0045271,GO:0046394,GO:0046686,GO:0046872,GO:0046914,GO:0048046,GO:0048511,GO:0050896,GO:0050897,GO:0051286,GO:0051716,GO:0065007,GO:0065008,GO:0070013,GO:0070469,GO:0071704,GO:0071944,GO:0097159,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:0120025,GO:0120038,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494,GO:1990204,GO:1990904
Exons5
EggNOG free text desc.glycine hydroxymethyltransferase activity
EggNOG OGsCOG0112@1,KOG2467@2759
EC2.1.2.1
Cds size558
COG Functional cat.H
BiGG ReactioniMM904.YBR263W,iND750.YBR263W
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462986.6986961-CDS-Ecto-sp13_S_contig19446:428..5811681462986.6986961-CDS-Ecto-sp13_S_contig19446:428..581Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19446 429..581 +
1681462986.712998-CDS-Ecto-sp13_S_contig19446:1238..13431681462986.712998-CDS-Ecto-sp13_S_contig19446:1238..1343Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19446 1239..1343 +
1681462986.7220757-CDS-Ecto-sp13_S_contig19446:1586..16941681462986.7220757-CDS-Ecto-sp13_S_contig19446:1586..1694Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19446 1587..1694 +
1681462986.731672-CDS-Ecto-sp13_S_contig19446:2401..25031681462986.731672-CDS-Ecto-sp13_S_contig19446:2401..2503Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19446 2402..2503 +
1681462986.7412746-CDS-Ecto-sp13_S_contig19446:3211..33011681462986.7412746-CDS-Ecto-sp13_S_contig19446:3211..3301Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19446 3212..3301 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19446.6247.1prot_Ecto-sp13_S_contig19446.6247.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19446 429..3301 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19446.6247.1

>prot_Ecto-sp13_S_contig19446.6247.1 ID=prot_Ecto-sp13_S_contig19446.6247.1|Name=mRNA_Ecto-sp13_S_contig19446.6247.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=186bp
QVRQRDSLVLIASENFTSKSVYDALGSIMSNKYSEGYPGARYYGGNEQID
KVESLCQKRALEAFDLDPEMWGVNVQTLSGSPANFQAYTAVLQPHDRIMS
LDLPHGGHLSHGYQTDTKKISMVSSFFETFPYRLDESTGQIDYDTMAANA
KLFRPKLIVAGASAYSRNIDYARMKEVADASGAWLL
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mRNA from alignment at Ecto-sp13_S_contig19446:429..3301+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19446.6247.1 ID=mRNA_Ecto-sp13_S_contig19446.6247.1|Name=mRNA_Ecto-sp13_S_contig19446.6247.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2873bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19446:429..3301+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGCGCCAGAGGGACAGCCTGGTCCTGATCGCCTCGGAGAACTTCAC
GTCCAAGTCGGTCTACGACGCGCTCGGCTCCATAATGTCCAACAAGTACA
GCGAGGGGTACCCGGGGGCAAGGTACTACGGCGGCAACGAGCAGATCGAC
AAGGTGATGGGAGTTTAAAGCCGTCGTGACCGTATTCTTTATTCCTTTGG
TGGAGAACGAATCCATCCGAGACAAGTCCTTGGGGTCCACCCTTTATTTG
GACAGACCGACAGCGTGGTACCAGCACTGGATGCGTGTACCCTGACTTGC
CGAGAGCAGGTCAATAAGGCCCTAATAGCGCGTAGATTGGTCGTCTTGTA
CGTGAGCAGACCGGTCAAGACGTTGGATTTGTCTTGACCCATAACAGTGA
GCTCCTCGACGAGCAGTAAATGTCTACTGTATCTGAAAACCTTCGCAGTC
CGGGGCGGCACTCGAGCAGCCCGAGGGACTAGCATGCGCTCTCCGAAGCG
ACCAACACTGTTTTTCGATGTCGTTTCCAAGCATCGACACTCATACCCAT
CACGTACTCGCACGAAATACGAATACATAGATCAACATACTTGCGTTGAC
GAGGCGGCAGCTGCTTCACCATAACATGCCCTCGTCAAGAGCGGACACTT
TGGTCTCAAAGCCCACTTACTTGCCTATTTCCTTGCAACGCCATGAGCTC
CGTCGTCCGCGGCTGGGCGGAGTAGGTAGTCGTTCACGGCACGTTTTGGA
AAGTATTGTTTTGAGTTGTCCACCACTGTATTGTGCGTCCGGGCTCTGTG
TACTACGTAGGTGGAGTCGCTCTGCCAAAAGAGAGCACTGGAGGCCTTCG
ACCTCGACCCAGAGATGTGGGGCGTCAACGTGCAGACGCTGTCTGGAAGC
CCAGCGAACTTCCAGGTACAGCACTGCCGTACACCAAGCTCTGTCTGCTG
GGATTTTTTTGTTTGCGCTTGTTTGTATTCCCAGTGCTTTTGTTGACTGC
TTCCAACACAAATCGTTTCAAACTGATGTTCCTTTGGCTTGGGTCGTGGT
TCTCTGGTACCTCTCTGCTGCGCTGTCTTTCGGCGTTCTCTACCGATAGC
CAAATGCCTTGTCTGATCAGCCTACCGACACGTGCGTGCTGTCTGTTTCG
TGATACAGGCGTACACCGCCGTGCTGCAGCCGCACGACCGCATCATGTCC
CTCGACCTCCCCCACGGGGGTCACCTGTCTCACGGCTACCAGACTGACAC
CAAGAAGATCTCGATGGTGAGAAGGAGAACATAAACCAATCGCCGCTTGG
CATGCACGCCTAGCACTCGTTAACTACCACTTTGGTTTGCTCGTGACTGC
GAACGAGTTTGCTATGTTGTGACTTGTGTTGGACCATGTTCGTGTGTTTT
TTTCACTGTGGTTGTTTCAGCCCCGCTAGCGTCATTCTTGTTTTTTTGCT
TGGTACGTTCTACACATGATCAAGCACTCCGCGGTATCCGCTACACTCTG
TCTCCCGCCAGCCTCGAAGCCGAAAGCAAGAGATGCTAGTGCTAACATAA
AGGGGGGGGGGGCGTATATACCGTTAGACCAGTGACCTCGCATGCTAGTG
CTAACACAAAGAGGAGGTGGCGTGATTGTTGCTTCAAAAAGTCCGCGAGG
TTTTCATCCTCACGCGGGATGTTGCTCCGCACGTGACACCCACACTAGCG
TGGAAGTGTTGATGAAAACGGGACTGTACTTTCACGGCAAGTTTTGTGGT
TATGATGAGACCTTGTTTCACAACGTGCCCTGACATGTTTATTTTTTCTC
GTCGCATCTCCACAGACTGACAACAGCATTTTTTTAACACGCTGCGTTGA
AGGTTTTTGTGGAGATGACCGCGGCGTGAACACTCACGGAATGGATGTGT
TCGTATCCATTTCTCCTGCAACGTTTTTATTTCTTGCTTCTTATTCTCTG
GTGCTACCCCGGTGGTATTCTAGGTGAGCTCTTTCTTCGAGACATTCCCC
TACCGCCTGGACGAGAGCACGGGCCAGATCGACTACGACACCATGGCGGC
CAACGCCAAGCTTTTCCGCCCCAAGGTATGTTTATCGAGAGACGTTCAAG
AGAGGCAGAGAGAGAGACAGAGACAGAGAGAGGGAGAGGGGGAGAGTGAG
ACAGACAGACAGAGACAGAGACAGAGAAACGGTCAAAGTCTTTCTATGTT
CAGTGATTGCGCCAGCCCAGCTGAGCTAAAATTTTCTTCGGGTCTTGGCA
GGACATGGTATTTCTTACTTCGTTCGAAAAGGATGGATTCCGTTGACCGA
CCCATCACCGAAGAGCCATTGATCTCAGCGGGGAAATGTACAACAATCAG
ACACTACGTCGATTTGTATCGTGTGTTGTGTGTTCCCCTGGCTGAGTGCA
TTGGACAATTTAGTTCCTCGTTCATGTACAGCATGATCGATTCGTAGTCC
GGCTGGCGATGCTTTGCAGTCGGGATGCAGTGGAGACGATGGTAAGCTCG
GTGTGCAAGCGTTACCCTCGTGAACCCCCCCGTACTCTCACCACCTTCAC
CGTTCCCAGCTGTTTTCCCCGCCTTCACATGCAACACGCCATCGACTACA
CCAGCCCACCTACTCACATGCGGCCATGGCGTCGTATGATAGGCGACCTG
CTTGTACCGAGCACATCTGCAACCTACATTATCAAGCTCACCCCGAAACC
CCGGTCGGCCCTCCCCTCTGGAATGTGTCCGTTTGTGTTGGACACTATCT
TGTTTTTGTTGACTTCCCTGACGCCGCCAAAAGCTTATCGTAGCTGGAGC
TAGCGCGTACTCGCGCAACATCGACTACGCCCGCATGAAGGAGGTCGCGG
ACGCCTCGGGGGCGTGGCTGCTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19446:429..3301+

>mRNA_Ecto-sp13_S_contig19446.6247.1 ID=mRNA_Ecto-sp13_S_contig19446.6247.1|Name=mRNA_Ecto-sp13_S_contig19446.6247.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=558bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19446:429..3301+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGCGCCAGAGGGACAGCCTGGTCCTGATCGCCTCGGAGAACTTCAC
GTCCAAGTCGGTCTACGACGCGCTCGGCTCCATAATGTCCAACAAGTACA
GCGAGGGGTACCCGGGGGCAAGGTACTACGGCGGCAACGAGCAGATCGAC
AAGGTGGAGTCGCTCTGCCAAAAGAGAGCACTGGAGGCCTTCGACCTCGA
CCCAGAGATGTGGGGCGTCAACGTGCAGACGCTGTCTGGAAGCCCAGCGA
ACTTCCAGGCGTACACCGCCGTGCTGCAGCCGCACGACCGCATCATGTCC
CTCGACCTCCCCCACGGGGGTCACCTGTCTCACGGCTACCAGACTGACAC
CAAGAAGATCTCGATGGTGAGCTCTTTCTTCGAGACATTCCCCTACCGCC
TGGACGAGAGCACGGGCCAGATCGACTACGACACCATGGCGGCCAACGCC
AAGCTTTTCCGCCCCAAGCTTATCGTAGCTGGAGCTAGCGCGTACTCGCG
CAACATCGACTACGCCCGCATGAAGGAGGTCGCGGACGCCTCGGGGGCGT
GGCTGCTG
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