mRNA_Ecto-sp13_S_contig1944.6244.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1944.6244.1 vs. uniprot
Match: A0A6H5KNS3_9PHAE (GT49 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KNS3_9PHAE) HSP 1 Score: 473 bits (1217), Expect = 5.800e-154 Identity = 237/263 (90.11%), Postives = 241/263 (91.63%), Query Frame = 1
Query: 1 LSVVTHLSDDRLHQLEGLCLALTDGDDRTVKSNSAASAVSTICVAVFVQDKTASTRVRHAIHALPGLDQLIVCVQCFTSRSPSKASWYPINQLRNRALAQAGTDLVLICDVDFRPCRRLARLLRASGEIGSVFKRVSCRLNCVVLPAFEVSAARDDDDDGVSNEE-----------------TLACKQELLKQWEQGRVVPFASRVWAQGHRATNFDRWKAATDLSGWYEVAYEEGFEPFVIMNRLLVPAFDERFEGYGRNKV 738
LSV+THLSDDRLHQLEGLCLALTDGDDRTVKSNSAASAVSTICVAVFVQDKTASTRVRHAIHALPGLDQLIV VQCFT SPSKASWYPINQLRNRALAQAGTDLVLICDVDFRPCRRL RLLRASGEIGS+FKRVSCRLNCVVLPAFEVSAARDDDDDGVSNE+ TLACKQELLKQWEQGRV PFASRVWAQGHRATNFDRWKAATDLSGWYEVAYEEGFEPFVIMNR+LVPAFDERFEGYGRNKV
Sbjct: 31 LSVITHLSDDRLHQLEGLCLALTDGDDRTVKSNSAASAVSTICVAVFVQDKTASTRVRHAIHALPGLDQLIVRVQCFTRGSPSKASWYPINQLRNRALAQAGTDLVLICDVDFRPCRRLTRLLRASGEIGSIFKRVSCRLNCVVLPAFEVSAARDDDDDGVSNEDVAQTAATEMPEKSWWLKTLACKQELLKQWEQGRVAPFASRVWAQGHRATNFDRWKAATDLSGWYEVAYEEGFEPFVIMNRVLVPAFDERFEGYGRNKV 293
BLAST of mRNA_Ecto-sp13_S_contig1944.6244.1 vs. uniprot
Match: A0A2P6TTI8_CHLSO (Glycosyltransferase LARGE2 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TTI8_CHLSO) HSP 1 Score: 137 bits (345), Expect = 4.260e-33 Identity = 94/260 (36.15%), Postives = 135/260 (51.92%), Query Frame = 1
Query: 1 LSVVTHLSDDRLHQLEGLC------------LALTDGDDRTVKSNSAASAVSTICVAVFVQDKTASTRVRHAIHALPGLDQLIVCVQCFTSRSPSKASWYPINQLRNRALAQAGTDLVLICDVDFRPCRRLARLLRASGEIGSVFKRVSCRLNCVVLPAFEVSAARDDDDDGVSNEETLACKQELLKQWEQGRVVPFASRVWAQGHRATNFDRWKAATDLSGWYEVAYEEGFEPFVIMNRLLVPAFDERFEGYGRNKVCH 744
+++VT LS +RL+ LEG C +AL +G TV+ NS T V + K H + GL +L + + T S ++ YP+N +RNRALA A TD VL+ DVDF P L+ L++ + S+ + +VLPA+E A D + V+ E L K +K + GR+ F + + GHRATN+ RW A Y + YEEG+EP+VI++R VP +DERF GY +NKV H
Sbjct: 193 VTLVTQLSFERLYMLEGQCDVWNGVISAAVYIALLNGKAVTVELNSNQDPRLTDMAEVEAKFKQF-----HQLAEAKGLCKLDLMLVSQTVESVWLSALYPVNAMRNRALANAHTDAVLLLDVDFWPSAELSELMQKPAKYASLMSTLD-NGTAIVLPAYETGDAGDIGVE-VAREAVLEGKDAAVKMFWDGRIKAFHTDRYEAGHRATNYKRWLEAARP---YPIQYEEGYEPYVIIHRRYVPWYDERFVGYRKNKVVH 442
BLAST of mRNA_Ecto-sp13_S_contig1944.6244.1 vs. uniprot
Match: E1ZGE6_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZGE6_CHLVA) HSP 1 Score: 135 bits (339), Expect = 4.390e-33 Identity = 97/262 (37.02%), Postives = 137/262 (52.29%), Query Frame = 1
Query: 1 LSVVTHLSDDRLHQLEGLC------------LALTDGDDRTVKSNSAASAVSTICVAVFVQDKTASTRVRHAIHALPGLDQLIVCVQCFTSRSPSKASWYPINQLRNRALAQAGTDLVLICDVDFRPCRRLARLLRASGEIGSVFKRVSCRLNCVVLPAFEVSAARDDDDDGV--SNEETLACKQELLKQWEQGRVVPFASRVWAQGHRATNFDRWKAATDLSGWYEVAYEEGFEPFVIMNRLLVPAFDERFEGYGRNKVCH 744
+++VT LS +RL+ LEG C +AL +G TV+ NS T V + K H + GL +L + + T S ++ YP+N +RNRALA A TD VL+ DVDF P L+ L++ + S+ K + VVLPA+E D D GV + E L K +K + GR+ F + + GHRAT++ +W A S Y + YEEGFEP+VI++R VP +DERF GY +NKV H
Sbjct: 157 VTLVTQLSFERLYMLEGQCDVWNGVISAAVYIALLNGKVVTVELNSNQDPRLTDITEVERKFKQF-----HQLAEAKGLCKLDLQLVSQTVESIWLSALYPVNAMRNRALANARTDAVLLLDVDFWPSAELSELMQKPAKYESLMKTLQAGA-AVVLPAYETG---DPGDIGVEVAREAVLEGKDAAVKMFWDGRIKAFHTDRYEAGHRATDYKKWLQA---SRPYNIMYEEGFEPYVIISRKFVPWYDERFVGYRKNKVVH 406
BLAST of mRNA_Ecto-sp13_S_contig1944.6244.1 vs. uniprot
Match: A0A059LMG0_9CHLO (Dystroglycan glycosyl-transferase (Fragment) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LMG0_9CHLO) HSP 1 Score: 130 bits (327), Expect = 1.370e-32 Identity = 95/264 (35.98%), Postives = 135/264 (51.14%), Query Frame = 1
Query: 1 LSVVTHLSDDRLHQLEGLC------------LALTDGDDRTVK--SNSAASAVSTICVAVFVQDKTASTRVRHAIHALPGLDQLIVCVQCFTSRSPSKASWYPINQLRNRALAQAGTDLVLICDVDFRPCRRLARLLRASGEIGSVFKRVSCRLNCVVLPAFEVSAARDDDDDGV--SNEETLACKQELLKQWEQGRVVPFASRVWAQGHRATNFDRWKAATDLSGWYEVAYEEGFEPFVIMNRLLVPAFDERFEGYGRNKVCH 744
+++VT LS +RL+ LEG C +A DG V+ SN V VA V R HA GL +L + + S ++ YP+N +RNRALA A TD+VL+ DVDF P L L ++ + S+ + + R N +VLPAFE RD GV + + L K + + GR+ F + + GHRAT++ +W AT Y V YEEG+EP++++ R VP +DERF GY +NKV H
Sbjct: 24 ITLVTQLSFERLYMLEGQCDVWSGIISAAVYVAKVDGQAVVVELSSNQDPRLVPLASVASRV-------RAFHAAAESKGLCKLDLQLVSQDVESVWLSALYPVNAMRNRALAAARTDVVLLLDVDFWPSAELGELASSARKYASLREATAAR-NAIVLPAFET---RDSGGVGVEAARDAALDGKSAAAQMYRDGRLKAFHADRYRAGHRATDYAKWLEATRP---YRVRYEEGYEPYILVARAAVPWYDERFVGYRKNKVVH 273
BLAST of mRNA_Ecto-sp13_S_contig1944.6244.1 vs. uniprot
Match: A0A061QTH2_9CHLO (Glycosyltransferase-like protein LARGE n=3 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QTH2_9CHLO) HSP 1 Score: 127 bits (320), Expect = 1.170e-30 Identity = 89/255 (34.90%), Postives = 132/255 (51.76%), Query Frame = 1
Query: 1 LSVVTHLSDDRLHQLEGLCLALTDGDDRTVKSNSAASAVSTICVAVFVQDKTASTRVRHAIHALP----GLDQLIVCVQCFTSRSPSKASW-YPINQLRNRALAQAGTDLVLICDVDFRPCRRLARLLRASGEIGSVFKRVSCRLN--CVVLPAFEVSAARDDDDDGVSNEETLACKQELLKQWEQGRVVPFASRVWAQGHRATNFDRWKAATDLSGWYEVAYEEGFEPFVIMNRLLVPAFDERFEGYGRNKVCH 744
+++VT LS DRL +L+ C++ + + A + V + + R + A+ G Q+ + V+ S+AS YP+N LRN ALA+A TDLVL+ DVDF +R + +++ SC LN +VLPAF+ + + A K E++K +E G + FA R + +GHRATN++RWK A Y + YEEGFEPFV+ R L+P ++ F GYGRNKV H
Sbjct: 39 ITLVTQLSTDRLAKLQEQCMSWSGLTSAALYCPVAKGRLRRDAV------RRCADEARAVVSAMERRGRGALQIAIVVETVALVELSQASIRYPVNALRNVALAEARTDLVLLLDVDFILSSSASRNFSLDSRLQQMYR--SCCLNKEILVLPAFQARSCE------TALASAQADKFEVVKLFEDGTIEQFAKREFDKGHRATNYERWKQARSE---YALQYEEGFEPFVVAARALIPWYNPIFRGYGRNKVIH 276
BLAST of mRNA_Ecto-sp13_S_contig1944.6244.1 vs. uniprot
Match: A0A087SLB5_AUXPR (Glycosyltransferase-like protein LARGE2 n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SLB5_AUXPR) HSP 1 Score: 122 bits (307), Expect = 6.660e-29 Identity = 88/260 (33.85%), Postives = 129/260 (49.62%), Query Frame = 1
Query: 1 LSVVTHLSDDRLHQLEGLC------------LALTDGDDRTVKSNSAASAVSTICVAVFVQDKTASTRVRHAIHALPGLDQLIVCVQCFTSRSPSKASWYPINQLRNRALAQAGTDLVLICDVDFRPCRRLARLLRASGEIGSVFKRVSCRLNCVVLPAFEVSAARDDDDDGVSNEETLACKQELLKQWEQGRVVPFASRVWAQGHRATNFDRWKAATDLSGWYEVAYEEGFEPFVIMNRLLVPAFDERFEGYGRNKVCH 744
+++VT LS +RL+ LEG C +AL G +V+ NS + + A+ R H + G+ +L + + + + YP+N +RNRALA A TD+VL+ DVDF P L ++ + S+ V R +VLPAFE A D + V+ L K GR+ PF + + GHRAT++ RW A Y + YEEG+EP+V++ R VP +DERF GY +NKV H
Sbjct: 66 VTLVTQLSFERLYMLEGQCDVWSGTISAAVYIALVGGKAVSVELNSNQDPH-----LIALSRVVAAFRQFHELAEQKGICKLDLQLVSQEVENVWLSGLYPVNSMRNRALANAKTDVVLLLDVDFWPSAELVEVMAQPRKYESLRGAVLAR-RAIVLPAFEPGDAGDVGVE-VARGAELGGKAAAAAMSRDGRLKPFHTDRYRAGHRATDYARWLTARTP---YHIRYEEGYEPYVLVARRFVPWYDERFVGYRKNKVVH 315
BLAST of mRNA_Ecto-sp13_S_contig1944.6244.1 vs. uniprot
Match: A0A2R6WER0_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WER0_MARPO) HSP 1 Score: 123 bits (309), Expect = 2.660e-28 Identity = 96/263 (36.50%), Postives = 137/263 (52.09%), Query Frame = 1
Query: 1 LSVVTHLSDDRLHQLEGLCLALTDGDDRTVKSNSAASAVSTICVAVFVQDKTASTRVRHAIHAL----PGLDQLIVCVQCFTSRSPSKAS----W-YPINQLRNRALAQAGTDLVLICDVDFRPCRRLARLLRASGEIGSVFKRVSCRLN-CVVLPAFE-VSAARDDDDDGVSNEETLAC----KQELLKQWEQGRVVPFASRVWAQGHRATNFDRWKAATDLSGWYEVAYEEGFEPFVIMNRLLVPAFDERFEGYGRNKVCH 744
++V TH S DRL +LE S +AV C + A+ RVR A+HA PGL +L + + C R S S W YPIN LRN AL A T+LVL+ DVD P + L + ++ + + R L +VLPA + VS +R+ + L+ K ++K WEQG V FAS V+ GH +T+ +RW ++ + Y+V Y++G+EP+++ R LVP +DERF GYGRNKV H
Sbjct: 34 VTVCTHCSLDRLERLEA---------QTKCWSGVICAAVMVPCPCSPASIRLAAKRVR-ALHAKVEDGPGLCRLDIVLVCHRRRRTSVVSCADPWQYPINALRNVALRFAATELVLLLDVDLLPGLGIQEELW-NHDVYAGYHRACTELRRVIVLPALQQVSPSRESSPIRHEIQAGLSIVSSGKAHVVKMWEQGTVRVFASHVYPLGHGSTDTERWLSSVAM---YQVQYKDGYEPYLLCARRLVPWYDERFIGYGRNKVIH 282
BLAST of mRNA_Ecto-sp13_S_contig1944.6244.1 vs. uniprot
Match: A0A2A6BCL6_PRIPA (Lge-1 n=2 Tax=Pristionchus pacificus TaxID=54126 RepID=A0A2A6BCL6_PRIPA) HSP 1 Score: 119 bits (299), Expect = 4.470e-27 Identity = 62/165 (37.58%), Postives = 95/165 (57.58%), Query Frame = 1
Query: 259 WYPINQLRNRALAQAGTDLVLICDVDFRPCRRLARLLRASGEIGSVFKRVSCRLNCVVLPAFEVSAARDDDDDGVSNEETL---ACKQELLKQWEQGRVVPFASRVWAQGHRATNFDRWKAATDLSGWYEVAYEEGFEPFVIMNRLLVPAFDERFEGYGRNKVCH 744
+YPIN LRN AL + TD + DVDF P R L LR SV + V+ +V+PAFE++++ E L ++EL+++W+ G++ PF + +W GH +T++D+WK A YEV ++ G+EP+ ++ R P +DERF G+G NKV H
Sbjct: 463 YYPINYLRNVALNASKTDFAYLADVDFIPSRGLYENLR------SVVQNVNMNKKALVVPAFEIASS-----------EKLHFPRTREELIREWDDGKIQPFRTDIWPAGHNSTDYDKWKEAESP---YEVEWKPGYEPYAVIARNSTPLYDERFVGFGWNKVSH 607
BLAST of mRNA_Ecto-sp13_S_contig1944.6244.1 vs. uniprot
Match: A0A1D1ZY95_AUXPR (Uncharacterized protein (Fragment) n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D1ZY95_AUXPR) HSP 1 Score: 114 bits (286), Expect = 8.000e-27 Identity = 62/166 (37.35%), Postives = 100/166 (60.24%), Query Frame = 1
Query: 247 SKASWYPINQLRNRALAQAGTDLVLICDVDFRPCRRLARLLRASGEIGSVFKRVSCRLNCVVLPAFEVSAARDDDDDGVSNEETLACKQELLKQWEQGRVVPFASRVWAQGHRATNFDRWKAATDLSGWYEVAYEEGFEPFVIMNRLLVPAFDERFEGYGRNKVCH 744
++A YP N +RNRAL A T++VL+ DVDF P L+ L + + +R+ + +VLPAFE+S R +D V ++ K L K + G+V F ++W++GH T++ +W AT+ Y V +++G+EP++++ R VP +DERF GYGR+K+ H
Sbjct: 43 AEAGLYPFNAIRNRALMLAQTEIVLLLDVDFMPSFFLSEELHEQEQYTRLRERLR-QGRVMVLPAFEMS--RQEDGREVVHKLAQGGKPALAKAYTGGQVAGFQIKLWSRGHMVTDYTKWWTATEP---YAVTFKKGYEPYILVLREHVPWYDERFRGYGRDKIVH 202
BLAST of mRNA_Ecto-sp13_S_contig1944.6244.1 vs. uniprot
Match: A0A7S3B4A4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3B4A4_9EUKA) HSP 1 Score: 112 bits (279), Expect = 4.590e-26 Identity = 61/169 (36.09%), Postives = 92/169 (54.44%), Query Frame = 1
Query: 259 WYPINQLRNRALAQAGTDLVLICDVDFRPCRRLARLLRASGEIGSVFKRVSCRLNCVVLPAFEVSAARDDDDDGVSNEETLAC-------KQELLKQWEQGRVVPFASRVWAQGHRATNFDRWKAATDLSGWYEVAYEEGFEPFVIMNRLLVPAFDERFEGYGRNKVCH 744
WYPIN LRN A +QA T+LV + DVDF P + + L ++ ++ ++C + +V+PAFE+ D + + + C K E+L G F + QGH T++ RW A T YEV Y + FEP+++ +R +P++DERFEGYG NK+ H
Sbjct: 12 WYPINALRNLATSQARTELVFLVDVDFVPAAGIQQTLATQQQLQAM---LTCSVTALVIPAFEMGTTADAETGNGTLPGSTTCAVELPTTKAEILPLVASGSAKGFHVEHFPQGHSNTDYGRW-AVTGAP--YEVKYSQYFEPYIVASRRWLPSYDERFEGYGMNKISH 174 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1944.6244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1944.6244.1 >prot_Ecto-sp13_S_contig1944.6244.1 ID=prot_Ecto-sp13_S_contig1944.6244.1|Name=mRNA_Ecto-sp13_S_contig1944.6244.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=256bp LSVVTHLSDDRLHQLEGLCLALTDGDDRTVKSNSAASAVSTICVAVFVQDback to top mRNA from alignment at Ecto-sp13_S_contig1944:690..1508- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1944.6244.1 ID=mRNA_Ecto-sp13_S_contig1944.6244.1|Name=mRNA_Ecto-sp13_S_contig1944.6244.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=819bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1944:690..1508- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1944:690..1508- >mRNA_Ecto-sp13_S_contig1944.6244.1 ID=mRNA_Ecto-sp13_S_contig1944.6244.1|Name=mRNA_Ecto-sp13_S_contig1944.6244.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=768bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1944:690..1508- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |