mRNA_Ecto-sp13_S_contig19431.6241.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19431.6241.1
Unique NamemRNA_Ecto-sp13_S_contig19431.6241.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19431.6241.1 vs. uniprot
Match: A0A6H5L6R6_9PHAE (Peroxin-1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R6_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 8.880e-41
Identity = 78/84 (92.86%), Postives = 79/84 (94.05%), Query Frame = 1 
Query:    1 MYFWLNSSSGAIEVPLALAQVMGLAAALDSDAYLSVAAEPAGYVPTASRVCLEPLSCDDWEILEANAEHLEGHMLTQVRGIVTG 252
            MY WL+SSSGAIEVPLALAQVMGLAAALDSDAYLSVAAEPAGYVPTASRVCLEPLSCDDWEILEANAEHLEGHMLTQV    TG
Sbjct:    1 MYVWLDSSSGAIEVPLALAQVMGLAAALDSDAYLSVAAEPAGYVPTASRVCLEPLSCDDWEILEANAEHLEGHMLTQVCVAYTG 84
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BLAST of mRNA_Ecto-sp13_S_contig19431.6241.1 vs. uniprot
Match: D7FVI2_ECTSI (Peroxin-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVI2_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 4.110e-35
Identity = 69/79 (87.34%), Postives = 74/79 (93.67%), Query Frame = 1 
Query:   16 NSSSGAIEVPLALAQVMGLAAALDSDAYLSVAAEPAGYVPTASRVCLEPLSCDDWEILEANAEHLEGHMLTQVRGIVTG 252
            ++ SGAIEVPLALAQV+GLAAALD+D+YLSVAAEPAGYVPTASRVCLEPLSCDDWEILEANAEHLEGHMLTQV    TG
Sbjct:   66 DAQSGAIEVPLALAQVLGLAAALDADSYLSVAAEPAGYVPTASRVCLEPLSCDDWEILEANAEHLEGHMLTQVCVAYTG 144
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BLAST of mRNA_Ecto-sp13_S_contig19431.6241.1 vs. uniprot
Match: A0A0D2LQD4_9CHLO (Peroxin-1 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2LQD4_9CHLO)

HSP 1 Score: 57.0 bits (136), Expect = 8.950e-8
Identity = 37/78 (47.44%), Postives = 43/78 (55.13%), Query Frame = 1 
Query:   22 SSGAIEVPLALAQVMGLAAALDSDAYLSVAAEPAGYVPTASRVCLEPLSCDDWEILEANAEHLEGHMLTQVRGIVTGG 255
            S GA+ VP ALA  +GL           V   P   VP A  V +EPLS DDWE+LE NA HLE  +L QV G+V  G
Sbjct:   71 SEGALGVPAALANCLGLRRGAP------VQLRPLAGVPAAEAVIVEPLSGDDWEVLELNAGHLEDQLLEQV-GVVAPG 141
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BLAST of mRNA_Ecto-sp13_S_contig19431.6241.1 vs. uniprot
Match: A0A5J4YGC6_9CHLO (Peroxin-1 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YGC6_9CHLO)

HSP 1 Score: 55.8 bits (133), Expect = 4.000e-7
Identity = 31/74 (41.89%), Postives = 47/74 (63.51%), Query Frame = 1 
Query:   34 IEVPLALAQVMGLAAALDSDAYLSVAAEPAGYVPTASRVCLEPLSCDDWEILEANAEHLEGHMLTQVRGIVTGG 255
            +E+P ALA  +G+A  +      +V+ +    +P A  VC+EPLS DDWE++E NA H+E  +L+QV G+V  G
Sbjct:   85 LEIPAALAGCLGIAQGI------TVSVQVVTDIPEAIGVCVEPLSVDDWEVVEQNAGHMEEQILSQV-GVVQAG 151
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BLAST of mRNA_Ecto-sp13_S_contig19431.6241.1 vs. uniprot
Match: A0A7S2SM78_9STRA (Peroxin-1 n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SM78_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 3.580e-6
Identity = 31/75 (41.33%), Postives = 48/75 (64.00%), Query Frame = 1 
Query:   34 IEVPLALAQVMGLAAALD--------SDAYLSVAAEPAGYVPTASRVCLEPLSCDDWEILEANAEHLEGHMLTQV 234
            ++VP+ALA+ +GL  A+D        S   +SVA  P  Y P ASRV ++P++ DDWEIL+ +A  +E  +L+Q+
Sbjct:   83 LQVPVALAESIGLKDAVDFATKTAPDSPLVVSVAVIP--YAPVASRVDVDPVTADDWEILQLHANFVESELLSQI 155
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BLAST of mRNA_Ecto-sp13_S_contig19431.6241.1 vs. uniprot
Match: A0A2V0PIJ4_9CHLO (Peroxin-1 n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PIJ4_9CHLO)

HSP 1 Score: 52.8 bits (125), Expect = 4.910e-6
Identity = 30/71 (42.25%), Postives = 39/71 (54.93%), Query Frame = 1 
Query:   40 VPLALAQVMGLAAALDSDAYLSVAAEPAGYVPTASRVCLEPLSCDDWEILEANAEHLEGHMLTQVRGIVTG 252
            VP  LA  +GL          +V   P G VP A  V +EPL+ DDWE+++ NAEHLE  +L QV  +  G
Sbjct:   88 VPALLAACLGLRHGA------AVRLRPLGRVPVAEAVSVEPLTGDDWEVVDLNAEHLEERLLEQVGAVAVG 152
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BLAST of mRNA_Ecto-sp13_S_contig19431.6241.1 vs. uniprot
Match: A0A7K7Z3U3_THRLU (Peroxin-1 (Fragment) n=1 Tax=Thryothorus ludovicianus TaxID=74200 RepID=A0A7K7Z3U3_THRLU)

HSP 1 Score: 52.0 bits (123), Expect = 9.170e-6
Identity = 23/46 (50.00%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:  115 EPAGYVPTASRVCLEPLSCDDWEILEANAEHLEGHMLTQVRGIVTG 252
            EP  +V +  +V +EPL+ DDWEILE +A  LEGH+L Q+R +  G
Sbjct:   92 EPCSHVSSCQQVEVEPLTADDWEILELHASSLEGHLLDQIRVVFPG 137
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BLAST of mRNA_Ecto-sp13_S_contig19431.6241.1 vs. uniprot
Match: UPI001ABE27EF (peroxisome biogenesis factor 1 isoform X1 n=8 Tax=Bufo TaxID=8383 RepID=UPI001ABE27EF)

HSP 1 Score: 51.6 bits (122), Expect = 1.250e-5
Identity = 30/74 (40.54%), Postives = 43/74 (58.11%), Query Frame = 1 
Query:   16 NSSSGAIEVPLALAQVMGLAAALDSDAYLSVAAEPAGYVPTASRVCLEPLSCDDWEILEANAEHLEGHMLTQVR 237
            N+   A+E+   +A+ +GL   +D      V  +P   VP+   V +EPLS DDWEILE +A  LE H+L Q+R
Sbjct:   65 NADYTAVELSRQMAEKLGL---VDGQ---QVILKPCSMVPSCKEVTVEPLSADDWEILELHAAALEMHLLDQIR 132
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BLAST of mRNA_Ecto-sp13_S_contig19431.6241.1 vs. uniprot
Match: A0A6P4ZQM7_BRABE (Peroxin-1 n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4ZQM7_BRABE)

HSP 1 Score: 51.2 bits (121), Expect = 1.710e-5
Identity = 22/41 (53.66%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:  130 VPTASRVCLEPLSCDDWEILEANAEHLEGHMLTQVRGIVTG 252
            VPT +R+ +EP++ DDWEILE +A ++E H+L QVR + TG
Sbjct:  100 VPTCTRLHVEPVTVDDWEILELHASYIESHLLDQVRVVWTG 140
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BLAST of mRNA_Ecto-sp13_S_contig19431.6241.1 vs. uniprot
Match: A0A8K0A2G9_BRALA (PEX1 protein n=2 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0A2G9_BRALA)

HSP 1 Score: 50.8 bits (120), Expect = 2.340e-5
Identity = 22/41 (53.66%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:  130 VPTASRVCLEPLSCDDWEILEANAEHLEGHMLTQVRGIVTG 252
            VP+ +R+ +EP+S DDWEILE +A ++E H+L QVR + TG
Sbjct:  101 VPSCTRLHVEPVSVDDWEILELHASYIESHLLDQVRVVWTG 141
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19431.6241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6R6_9PHAE8.880e-4192.86Peroxin-1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxI... [more]
D7FVI2_ECTSI4.110e-3587.34Peroxin-1 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A0D2LQD4_9CHLO8.950e-847.44Peroxin-1 n=1 Tax=Monoraphidium neglectum TaxID=14... [more]
A0A5J4YGC6_9CHLO4.000e-741.89Peroxin-1 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996... [more]
A0A7S2SM78_9STRA3.580e-641.33Peroxin-1 n=1 Tax=labyrinthulid quahog parasite QP... [more]
A0A2V0PIJ4_9CHLO4.910e-642.25Peroxin-1 n=1 Tax=Raphidocelis subcapitata TaxID=3... [more]
A0A7K7Z3U3_THRLU9.170e-650.00Peroxin-1 (Fragment) n=1 Tax=Thryothorus ludovicia... [more]
UPI001ABE27EF1.250e-540.54peroxisome biogenesis factor 1 isoform X1 n=8 Tax=... [more]
A0A6P4ZQM7_BRABE1.710e-553.66Peroxin-1 n=1 Tax=Branchiostoma belcheri TaxID=774... [more]
A0A8K0A2G9_BRALA2.340e-553.66PEX1 protein n=2 Tax=Branchiostoma lanceolatum Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19431contigEcto-sp13_S_contig19431:2915..3169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score137.1
Seed ortholog evalue3.8e-30
Seed eggNOG ortholog2880.D7FVI2
Preferred namePEX1
Model size255
KEGG koko:K05093,ko:K13338,ko:K13525
KEGG TC3.A.16.1,3.A.20.1
KEGG Pathwayko01521,ko04010,ko04014,ko04015,ko04141,ko04144,ko04146,ko04151,ko04550,ko04810,ko05134,ko05200,ko05215,ko05226,ko05230,map01521,map04010,map04014,map04015,map04141,map04144,map04146,map04151,map04550,map04810,map05134,map05200,map05215,map05226,map05230
KEGG ModuleM00400,M00403
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000166,GO:0001881,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005829,GO:0006605,GO:0006625,GO:0006810,GO:0006886,GO:0006996,GO:0007017,GO:0007031,GO:0007275,GO:0007276,GO:0007283,GO:0007399,GO:0007417,GO:0007422,GO:0008022,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0010001,GO:0015031,GO:0015833,GO:0015919,GO:0016020,GO:0016043,GO:0016462,GO:0016558,GO:0016562,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017038,GO:0017076,GO:0017111,GO:0019953,GO:0021782,GO:0022008,GO:0022412,GO:0022414,GO:0023051,GO:0030154,GO:0030554,GO:0031090,GO:0031903,GO:0032501,GO:0032502,GO:0032504,GO:0032553,GO:0032555,GO:0032559,GO:0033036,GO:0033365,GO:0034613,GO:0035639,GO:0036094,GO:0042063,GO:0042579,GO:0042623,GO:0042886,GO:0043112,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043574,GO:0044237,GO:0044260,GO:0044422,GO:0044424,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044743,GO:0044877,GO:0045184,GO:0046907,GO:0046982,GO:0046983,GO:0048137,GO:0048232,GO:0048468,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0051179,GO:0051234,GO:0051301,GO:0051640,GO:0051641,GO:0051649,GO:0051704,GO:0055085,GO:0060151,GO:0060152,GO:0065002,GO:0065007,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072662,GO:0072663,GO:0097159,GO:0097367,GO:0098588,GO:0098805,GO:1901265,GO:1901363
Exons1
EggNOG free text desc.establishment of protein localization to peroxisome
EggNOG OGsCOG0464@1,COG0554@1,KOG0728@2759,KOG0735@2759
EC2.7.10.1
Cds size255
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00536,ko01000,ko01001,ko01020,ko03019,ko04050,ko04090,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462986.4095979-CDS-Ecto-sp13_S_contig19431:2914..31691681462986.4095979-CDS-Ecto-sp13_S_contig19431:2914..3169Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19431 2915..3169 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19431.6241.1prot_Ecto-sp13_S_contig19431.6241.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19431 2915..3169 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19431.6241.1

>prot_Ecto-sp13_S_contig19431.6241.1 ID=prot_Ecto-sp13_S_contig19431.6241.1|Name=mRNA_Ecto-sp13_S_contig19431.6241.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=85bp
MYFWLNSSSGAIEVPLALAQVMGLAAALDSDAYLSVAAEPAGYVPTASRV
CLEPLSCDDWEILEANAEHLEGHMLTQVRGIVTGG
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mRNA from alignment at Ecto-sp13_S_contig19431:2915..3169+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19431.6241.1 ID=mRNA_Ecto-sp13_S_contig19431.6241.1|Name=mRNA_Ecto-sp13_S_contig19431.6241.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19431:2915..3169+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACTTTTGGCTCAACTCGAGCAGCGGTGCTATCGAGGTCCCCCTCGC
GCTGGCGCAAGTGATGGGGCTGGCGGCTGCGCTCGACTCGGACGCCTACC
TGTCGGTAGCGGCGGAGCCGGCGGGCTACGTCCCCACCGCCTCTCGCGTG
TGCCTTGAGCCGCTCTCTTGCGACGACTGGGAAATACTGGAGGCCAACGC
GGAGCACTTGGAGGGCCACATGCTGACACAGGTGCGTGGTATTGTGACTG
GCGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19431:2915..3169+

>mRNA_Ecto-sp13_S_contig19431.6241.1 ID=mRNA_Ecto-sp13_S_contig19431.6241.1|Name=mRNA_Ecto-sp13_S_contig19431.6241.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19431:2915..3169+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACTTTTGGCTCAACTCGAGCAGCGGTGCTATCGAGGTCCCCCTCGC
GCTGGCGCAAGTGATGGGGCTGGCGGCTGCGCTCGACTCGGACGCCTACC
TGTCGGTAGCGGCGGAGCCGGCGGGCTACGTCCCCACCGCCTCTCGCGTG
TGCCTTGAGCCGCTCTCTTGCGACGACTGGGAAATACTGGAGGCCAACGC
GGAGCACTTGGAGGGCCACATGCTGACACAGGTGCGTGGTATTGTGACTG
GCGGG
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