mRNA_Ecto-sp13_S_contig1943.6237.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1943.6237.1
Unique NamemRNA_Ecto-sp13_S_contig1943.6237.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1943.6237.1 vs. uniprot
Match: D7G8J3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8J3_ECTSI)

HSP 1 Score: 502 bits (1292), Expect = 1.250e-171
Identity = 261/274 (95.26%), Postives = 265/274 (96.72%), Query Frame = 3 
Query:  789 MTDRKIFDLFYGARENDHDMCRRAYETGADINFAFDGRRATKGGAGRWYYGDLQWYAPDGVDGDKKDTLLIIAVKTNNAKLVQWMLTLDGLDTAKENGKGLNAMAVAKAIGRENLLLGMEACDDGLSGAVDMSEKSAANAADPNAPPLPPEKADADEAAMEVARLRTAMKMLKANNDEKEAKITKAQQDCQAYQQMLKEKDANIGELQKQVLEREKEVIVMLHKIGRLEEALREYTDFRQADAEQYTDWGRADQYDAESGGAGAAASAAPENGS 1610
            MTDRKIFDLFYGARENDHDMCRRAYETGADINFAFDGRRATKGGAGRWYYGDLQWYAPDGVDGDKKDTLLIIAVKTNN KLV+WMLTLDGLDTAKENGKGLNAMAVAKAIGRENLLLGM ACDDGL G VD S KSAA+AADPNAPPLPP+KA ADEA MEVARLRTAMKMLKANNDEKEAKITKAQQDCQAYQQMLKEKDANIGELQKQVLEREKEVIVMLHKIGRLEEALREYTDFRQADAEQYTDWGRAD YDAE+GGAGAAASAAPENGS
Sbjct:    1 MTDRKIFDLFYGARENDHDMCRRAYETGADINFAFDGRRATKGGAGRWYYGDLQWYAPDGVDGDKKDTLLIIAVKTNNVKLVEWMLTLDGLDTAKENGKGLNAMAVAKAIGRENLLLGMAACDDGLPGGVDASAKSAASAADPNAPPLPPDKAAADEATMEVARLRTAMKMLKANNDEKEAKITKAQQDCQAYQQMLKEKDANIGELQKQVLEREKEVIVMLHKIGRLEEALREYTDFRQADAEQYTDWGRADHYDAENGGAGAAASAAPENGS 274
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BLAST of mRNA_Ecto-sp13_S_contig1943.6237.1 vs. uniprot
Match: A0A836CH98_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH98_9STRA)

HSP 1 Score: 201 bits (512), Expect = 6.560e-56
Identity = 119/260 (45.77%), Postives = 160/260 (61.54%), Query Frame = 3 
Query:  789 MTDRKIFDLFYGARENDHDMCRRAYETGADINFAFDGRRATKGGAGRWYYGDLQWYAPDGVDGDKKDTLLIIAVKTNNAKLVQWMLTLDGLDTAKENGKGLNAMAVAKAIGRENLLLGMEACDDGLSGAVDMSEKSAAN--------AADPNAPPLPPEKADADEAAMEVARLRTAMKMLKANNDEKEAKITKAQQDCQAYQQMLKEKDANIGELQKQVLEREKEVIVMLHKIGRLEEALREYTDFRQADAEQYTDWGRA 1544
            MTDRK+FDLF+GARE D   C+ AYE GA++NF ++G++AT+G  GRWYYGDL W+APD VD +K +TLL+IA+K NN  LV W+LTLD LD    N KG +A  VA   GR ++L  M A       A                  AA  +APP     ADA+E    + R   A+K+L  +ND KE +    + + +  +Q++KEKDA IGELQ  V  +E+E+IVM+HK+ +L+  L EYTD RQ DA  +  WG+A
Sbjct:    1 MTDRKVFDLFFGAREGDLSACKAAYEAGANVNFQYEGKKATRGAGGRWYYGDLIWHAPDSVDANKNETLLMIAIKANNKPLVDWLLTLDRLDVTVRNIKGQDAFQVATEFGRSSMLT-MVATPPPAPAAXXXXXXXXXXXXXXXXXPAAVTSAPPSV--SADAEE----IKRQCNAIKLLTISNDTKEEENRALKAEVERCKQVIKEKDATIGELQNTVFSKEREMIVMMHKMEQLQATLAEYTDVRQGDAAVFEQWGQA 253
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1943.6237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8J3_ECTSI1.250e-17195.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CH98_9STRA6.560e-5645.77Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1943contigEcto-sp13_S_contig1943:1349..5249 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2213
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_003220.1
Cds size825
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1943.6237.1prot_Ecto-sp13_S_contig1943.6237.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1943 2137..4649 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462986.0256822-UTR-Ecto-sp13_S_contig1943:1348..21361681462986.0256822-UTR-Ecto-sp13_S_contig1943:1348..2136Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1943 1349..2136 +
1681462986.078547-UTR-Ecto-sp13_S_contig1943:4649..52491681462986.078547-UTR-Ecto-sp13_S_contig1943:4649..5249Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1943 4650..5249 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462986.037482-CDS-Ecto-sp13_S_contig1943:2136..22791681462986.037482-CDS-Ecto-sp13_S_contig1943:2136..2279Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1943 2137..2279 +
1681462986.0468857-CDS-Ecto-sp13_S_contig1943:3381..37571681462986.0468857-CDS-Ecto-sp13_S_contig1943:3381..3757Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1943 3382..3757 +
1681462986.0568235-CDS-Ecto-sp13_S_contig1943:4057..41681681462986.0568235-CDS-Ecto-sp13_S_contig1943:4057..4168Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1943 4058..4168 +
1681462986.0688653-CDS-Ecto-sp13_S_contig1943:4454..46491681462986.0688653-CDS-Ecto-sp13_S_contig1943:4454..4649Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1943 4455..4649 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1943.6237.1

>prot_Ecto-sp13_S_contig1943.6237.1 ID=prot_Ecto-sp13_S_contig1943.6237.1|Name=mRNA_Ecto-sp13_S_contig1943.6237.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=275bp
MTDRKIFDLFYGARENDHDMCRRAYETGADINFAFDGRRATKGGAGRWYY
GDLQWYAPDGVDGDKKDTLLIIAVKTNNAKLVQWMLTLDGLDTAKENGKG
LNAMAVAKAIGRENLLLGMEACDDGLSGAVDMSEKSAANAADPNAPPLPP
EKADADEAAMEVARLRTAMKMLKANNDEKEAKITKAQQDCQAYQQMLKEK
DANIGELQKQVLEREKEVIVMLHKIGRLEEALREYTDFRQADAEQYTDWG
RADQYDAESGGAGAAASAAPENGS*
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mRNA from alignment at Ecto-sp13_S_contig1943:1349..5249+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1943.6237.1 ID=mRNA_Ecto-sp13_S_contig1943.6237.1|Name=mRNA_Ecto-sp13_S_contig1943.6237.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3901bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1943:1349..5249+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGCCACCACAACCTGCGTGGGGGACGGCACCTGCGCGGAAGGATCGAGG
GTAATTAAAAATAGCAGTGCGTCTGCCGTTGTAGGGTTCGTTTCCCCCGC
GATGAGCCGTGCGCTGCTAACAACCCATGGAAGGCAGGCGCAGCAGAGAG
TGTACCGTGCTTGTGATGAGTCCTTCTGGATAGATAAGTAGACAAGGTCT
TTAGAACGCGCTGAGCTCTGCGTCGGGGAGATGGGGGGGGGAGGTGCGCC
ATACAACCCCGCATGAACCAACATGCTATTGAACGTACATATAGGATAGT
TCACAGTCAAATACCAGGTTCGCGGCGTTACTGTTGCCTATTGGGAGCGC
AAGCCCATGTCGCACGTCGCACTCAACAGCTTAACAGTCAACAGCAAGGG
TTCATACGCGCGCGAGAGGTTCCGAGGTATGATTGATGCATGTTCGAGCA
CCATTTTTGAGTACTCAGTGGTCGGGCCTCCCTCCTGTGCCTCAATGCGT
TGGCAGAGGAGAACTACCCGCGGTGTTTTGGGTTTATAGGTTCTCGGAAG
TTTGAAGTCACGAATGCGTAGTTTGCAGTATCACTCGATGCGAGTCGGAT
GTATGTGTTCATGCGTGATCACATGTACGATACTCGGTAACAGTGATCGA
GAAATTAGTCCGAAATGTTTACTCGTGCAAGGTAGTGCAGCAGTGCAGGC
TGTCCGTAGCGAATATGTTTGGCGCGCCCACTTCTATGCCGTCACCACGG
TATGTTCGTTGCTACTGCTGCAATAGGCCTTCCTTAACATGACGGACCGC
AAGATCTTCGATCTCTTTTATGGGGCAAGGGAGAACGACCATGATATGTG
CCGCCGTGCGTACGAGACCGGCGCCGACATCAACTTTGCCTTCGACGGGC
GCCGAGCGACTAAGGGCGGGGCCGGACGATGGTACGCCACATGACAGCTG
TGCACACATCGATGATGTTATGCGAACAGTCGTCTTTCGTTTTTCTTTCG
GGGTCATTAGGTCTTCTGTTTCGCCGTCACAAGGCCTCTGTGGGCACTGA
CTGCTGTTACATAGACAGCGCACAAGTATTATTGCCTGCGGCAAACGGAA
GATATGTGTAGTCTCTGGGGTTCGATCCCCAGCTATCTGCCGCCAGCTGA
CTACTGTACGTAGGCTAGCTGTAGACGCTGTCTTCTTAACGAAGGGAACG
TCGAGGGTTCCTTTCTCGTCATACACGTCTTTTCTGCCTGAGATACGCTG
AGAACTGAGCTGCCGTACATCATGAAGCGCTGGCGAGGGGCACCCCCCGC
GGATATTCTCTGGTATTTGCCGGCAAAGAGCTGAGGATCGAACGCCAGAA
ACTTGTTTTTTGCTACATGCAGCCCACCGGCCCCCCAAGCATCCATCCCC
TTGTTAGCGGAGCTTTACGGTAGCATCAGAGAACGAAGGGCACCTCGTGA
CAGCTGAGTTCTGCAGCTATAGAAAAATACTAGCATCGAGGCCATGGATG
TTGTGCCCCTGTAGCTATGTAATCTATGGCATGAAACTACAAAAGTATTT
ACTTTTATAGTGGTCCCTAAAAGTTTCGCCGAGAACGAGACCGTGGCGCA
TGAAACTGCAGTTTTTTCAACCAGCATGTGGTTTCGGTGTCTTTTGGGTG
AACCGGCTCGCCATGCATGCAGAATTGTCAACTCCCCTGCGCATGTTAAG
ATGTACATGTGGAGGTCAGGATATGGACATTCAGGGAGCACAGACACACG
TACGTAAAGAGTAGGATATGGGGTATATGTTAAAATAGGTATCTTGGGTC
CATGACTCTTGCGATTCCCATCAGCTGCGAAAAGATGATTAATCTGTAGG
AGCTCCAGGGTCAAAACAGACTTCTCTACGGACCTTGCCTTCGTTTTTTG
CGCACGCATTGTAGGAGTTCTGCCTCGATGTGATCGGATGGGCGCCAGCC
TGGCGAGCCGCCCAACAAACAGAAGCCTTCATACCACTAGTACCACGGTG
CAACCCAAATCTTAACATTCTCTTCCTGATCAGGTACTATGGCGACCTGC
AGTGGTACGCCCCGGATGGCGTAGACGGTGACAAGAAAGACACGCTCCTG
ATAATAGCCGTGAAGACCAACAACGCAAAGCTCGTTCAGTGGATGCTAAC
TCTCGATGGATTGGACACAGCAAAGGAAAATGGCAAAGGCTTGAACGCCA
TGGCTGTTGCCAAGGCCATCGGGAGGGAGAATCTACTCCTAGGAATGGAA
GCTTGTGATGATGGACTATCAGGTGCGGTAGATATGAGCGAAAAGAGCGC
AGCGAATGCAGCGGATCCCAACGCCCCCCCACTCCCCCCGGAGAAGGCTG
ATGCTGATGAGGCAGCAATGGAAGTTGCCCGACTTCGAACCGCCATGAAG
ATGCTGAAGGTGATGACGAGACGCGACTGTACGCAAGAAGCATCTACTTC
GGGTGCGGGCAACGCAGTTCGCGTTGACGATTCCGAGTTCAGACGACTTC
GAAGCTGTCTGTCATGTTGTCCGCAAACAACGGATGTTTTTCTTTTTTGG
CGTTTTCTTTGTGTACAGAACTTGTTTTGCAGATGTTCGCACATCGACAA
CTCGCTGAAGATTAAGGAGGAGCAACCATGACACCACGTTCTTAGATCAG
ACATCCCGAAAGTTTCCACCCCGAAAATATACTGCACACCGTGCAATGTA
CCACTTTAGGCCAACAACGACGAGAAGGAAGCCAAAATTACAAAGGCCCA
GCAGGACTGCCAAGCGTATCAACAAATGCTCAAGGAGAAGGACGCAAACA
TCGGGGAGCTGCAAAAACAGGTGAAGGGGGTCCCTCCGACTTTACTCCGG
ATGAAACGATGGCACCAGCAATCAATGTGATATGCTACCCTGTTCCCGCT
AAGATTGGCGGCGACAGAGATGGGACTCTGAATGACAACCCACCCATGCG
TCGGCACGCGTTTAGCCAAGGCATGTTGGTGCAAAAGAGTTCACACGTTT
TTGCATATGGGTCAATAAAGCCACAAGCTGAAGTGAAACGATAGTGGCGT
AGAAAACCTTGTCTCTGTTGGTGGAGCTCAGGAATTACACTGCGCGACGA
AAACAGGTACTGGAACGAGAGAAAGAGGTGATCGTGATGCTGCACAAAAT
CGGGCGTCTGGAGGAGGCCTTGAGGGAATACACCGACTTCCGTCAGGCAG
ACGCCGAGCAGTACACCGATTGGGGTCGAGCAGATCAATACGATGCTGAG
AGCGGAGGTGCAGGAGCAGCGGCTTCGGCAGCGCCTGAAAACGGGTCGTG
ATGAAGAACATCTCGAATCGAGAAATCGACAAGCAAGCGCGCAAAGCGAT
GTACAGGCTCCCGCATACATGCAACGATTTTGAGTGTTTTGTGTTCGGAG
GACGTTCGTGCGTGGGGAACAGAGAACCAAGATATGGTGTCTTGACGGTG
AGCTACTCGATTGTTCTCCCTCGAGGGGCACGAGTCAAGCCAGCGCTGCC
GTACAAGTGTGAAGCGCCGGCGCAAAAAGCGAATAAACCGTGCGTGTTCT
CTCCTCTCGGGCATTACTTGCCAGTCTCGGATTCCTTCGTGTTCAGTCTC
CGCAAACGAAAGTTCTTCGTTTTGTGCTTGATTATGAGCGCGTGGGCATC
GATGGTGTGCTGTTGTCACTGTTTGCTCACCTAAGTAGAAAACCGAATTC
CTCTCGTTGTCCATACTGCTATCTTCGCTGTTGCAGTGTTTCTATAGAGT
GTGCACACTTGTAGTCGCCGCGATATGAACTTGGTAGCACCTACACACAT
GTTTGCGCAGGACTCAGGTGGTGGTATTGGGTGGTAGGAAAACGGAAACG
GCGAAAGACTGGCGTTTTGATTCCCACCGCAGTAGGACCGCCTTGTGCGT
G
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1943:1349..5249+

>mRNA_Ecto-sp13_S_contig1943.6237.1 ID=mRNA_Ecto-sp13_S_contig1943.6237.1|Name=mRNA_Ecto-sp13_S_contig1943.6237.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=825bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1943:1349..5249+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGGACCGCAAGATCTTCGATCTCTTTTATGGGGCAAGGGAGAACGA
CCATGATATGTGCCGCCGTGCGTACGAGACCGGCGCCGACATCAACTTTG
CCTTCGACGGGCGCCGAGCGACTAAGGGCGGGGCCGGACGATGGTACTAT
GGCGACCTGCAGTGGTACGCCCCGGATGGCGTAGACGGTGACAAGAAAGA
CACGCTCCTGATAATAGCCGTGAAGACCAACAACGCAAAGCTCGTTCAGT
GGATGCTAACTCTCGATGGATTGGACACAGCAAAGGAAAATGGCAAAGGC
TTGAACGCCATGGCTGTTGCCAAGGCCATCGGGAGGGAGAATCTACTCCT
AGGAATGGAAGCTTGTGATGATGGACTATCAGGTGCGGTAGATATGAGCG
AAAAGAGCGCAGCGAATGCAGCGGATCCCAACGCCCCCCCACTCCCCCCG
GAGAAGGCTGATGCTGATGAGGCAGCAATGGAAGTTGCCCGACTTCGAAC
CGCCATGAAGATGCTGAAGGCCAACAACGACGAGAAGGAAGCCAAAATTA
CAAAGGCCCAGCAGGACTGCCAAGCGTATCAACAAATGCTCAAGGAGAAG
GACGCAAACATCGGGGAGCTGCAAAAACAGGTACTGGAACGAGAGAAAGA
GGTGATCGTGATGCTGCACAAAATCGGGCGTCTGGAGGAGGCCTTGAGGG
AATACACCGACTTCCGTCAGGCAGACGCCGAGCAGTACACCGATTGGGGT
CGAGCAGATCAATACGATGCTGAGAGCGGAGGTGCAGGAGCAGCGGCTTC
GGCAGCGCCTGAAAACGGGTCGTGA
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