mRNA_Ecto-sp13_S_contig19356.6205.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19356.6205.1
Unique NamemRNA_Ecto-sp13_S_contig19356.6205.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19356.6205.1 vs. uniprot
Match: A0A6H5KZY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZY4_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 7.050e-55
Identity = 182/313 (58.15%), Postives = 194/313 (61.98%), Query Frame = 1 
Query:    1 QRESELNGVIARANAALEENNDRRKASAEDATTQKPLAAVADSERQLLSIIAQREAKAAYWEKASPRAENTSDRLSLLAHKERSGNEAAGTGTTATADAGGARAKGTQGAAAXAT-----GASESAGPQHQAARLSPSAQLSQAAQVATVSGLSWSIGAMQAARVVQARAXXXXXXXXXXXXXXXXXXXXXXTVAVQPTQQQTAPSAHQAESAEEAAPQSVGXXXXXXXXXXXXXXXXXXXXXXAEASPFAPHDSSDDAEVEQTNEEQQSEIKRRLVLVQAEISRLDKEEAESGRASTAAADGV-EHPPATLE 921
            +RESELNGVIA ANAALEENNDRRKA    +   +  +  +    +      +R+        A  RAENTSDRLSLLAHKE+SGNEAAGTG                    X       G SES GPQHQAARLSPSAQLS       VSG SWSIGA           XXXXXXXXXXXXXXXXX     TV +QP QQQ APSA Q  SAEEAAP +                        AEASPFAPHDSSD AE+EQTNEEQQSEIKRRLVLVQAEISRLDKEEAESGRAS AAADGV EHPPATLE
Sbjct:  518 ERESELNGVIASANAALEENNDRRKARRRRSPRVRSSSCRSSRSERPRRPTGKRQLA------AQARAENTSDRLSLLAHKEQSGNEAAGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXIGDSESGGPQHQAARLSPSAQLSXXXXXXXVSGXSWSIGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGGKATVVMQPAQQQPAPSAQQVASAEEAAPPT------------------------AEASPFAPHDSSDAAEMEQTNEEQQSEIKRRLVLVQAEISRLDKEEAESGRASPAAADGVVEHPPATLE 800
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BLAST of mRNA_Ecto-sp13_S_contig19356.6205.1 vs. uniprot
Match: D7FYI9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYI9_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 2.480e-13
Identity = 50/65 (76.92%), Postives = 53/65 (81.54%), Query Frame = 1 
Query:    1 QRESELNGVIARANAALEENNDRRKASAEDATTQKPLAAVADSERQLLSIIAQREAKAAYWEKAS 195
            +RESELNGVIARANAALEEN+DRRKA            AVA+SERQLLSIIAQREAKAAYWEKAS
Sbjct:  353 ERESELNGVIARANAALEENDDRRKA------------AVAESERQLLSIIAQREAKAAYWEKAS 405
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19356.6205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KZY4_9PHAE7.050e-5558.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYI9_ECTSI2.480e-1376.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19356contigEcto-sp13_S_contig19356:187..2865 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1239
Hectar predicted targeting categoryother localisation
Exons4
Cds size1239
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462983.5797894-CDS-Ecto-sp13_S_contig19356:186..3011681462983.5797894-CDS-Ecto-sp13_S_contig19356:186..301Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19356 187..301 -
1681462983.5894144-CDS-Ecto-sp13_S_contig19356:708..16361681462983.5894144-CDS-Ecto-sp13_S_contig19356:708..1636Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19356 709..1636 -
1681462983.5999126-CDS-Ecto-sp13_S_contig19356:2191..22761681462983.5999126-CDS-Ecto-sp13_S_contig19356:2191..2276Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19356 2192..2276 -
1681462983.610206-CDS-Ecto-sp13_S_contig19356:2754..28651681462983.610206-CDS-Ecto-sp13_S_contig19356:2754..2865Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19356 2755..2865 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19356.6205.1prot_Ecto-sp13_S_contig19356.6205.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19356 187..2865 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19356.6205.1

>prot_Ecto-sp13_S_contig19356.6205.1 ID=prot_Ecto-sp13_S_contig19356.6205.1|Name=mRNA_Ecto-sp13_S_contig19356.6205.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=413bp
QRESELNGVIARANAALEENNDRRKASAEDATTQKPLAAVADSERQLLSI
IAQREAKAAYWEKASPRAENTSDRLSLLAHKERSGNEAAGTGTTATADAG
GARAKGTQGAAAAATGASESAGPQHQAARLSPSAQLSQAAQVATVSGLSW
SIGAMQAARVVQARAAGQAASEARAAAAGQASPGGKATVAVQPTQQQTAP
SAHQAESAEEAAPQSVGEAAPPSAGEPAPPSAGEPAPPSAEASPFAPHDS
SDDAEVEQTNEEQQSEIKRRLVLVQAEISRLDKEEAESGRASTAAADGVE
HPPATLESSSSSPAASAAATTTAAVTAPSWEPPLFPSSGNGVAGGVQQQQ
RQHGQQEERDEGQKEGLGEGAPAGRKGRRRARPRLAVAAAGARRVALCGE
LEALWTSHPPSE*
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mRNA from alignment at Ecto-sp13_S_contig19356:187..2865-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19356.6205.1 ID=mRNA_Ecto-sp13_S_contig19356.6205.1|Name=mRNA_Ecto-sp13_S_contig19356.6205.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2679bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19356:187..2865- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCGGGAGTCGGAGCTGAACGGCGTCATCGCAAGAGCCAACGCTGCGCT
GGAGGAAAACAACGACCGCCGAAAGGCAAGTGCAGAAGACGCAACCACCC
AAAAACCTCTGGTTTTACCCGAGGCTCGTTTCTTTTTTGTCTATGGGGTA
AGACTACCCCCCCCGGGACTAAATTAGCGTAGGCTTCTCGACGGAGCACC
TGTTCTTATGGCCAAGTTCTTAGATTTTGGATATTAGTCGGCTCAACTTC
TTGTGTGATGGCGCGTTCTGTAGAGGGCGGGTTCTCAAGCACCGCCCGTG
GGCGAGTTCCTGTTGTTTTCCAATGAGAAACCGATCCTTAAGTGATGCAC
CCGTTTCGGTTTGTAATTGGGCGAGCCGGTGACCACGGAAGTTGGCATGC
ACTGTAGGGAGGTTGGGTCTGCGAGGAAGAAGGTGCAAAAGACAGAGTCC
AAAACAGTTTATTTTGTGTGCGAACGTGTATCATGATCATCAACAACAAC
AGCGACATTATTGTAGCAGTGCGAGGTTTTTTTCACTGTAGTTATCCGCG
CCTCTTTTTTTTTTTGTCGCGCACTCTTCTTCACCGAAGGCGGCGGTTGC
CGACAGTGAGAGGCAGCTCCTGTCGATCATCGCGCAGCGAGAGGCCAAGG
CGGCCTACTGGGAAAAGGCAAGTCGTAACCCGCCTTCGTTTTTGTTTTAT
TGCGGCAAGCATGACGCTGGGCGCTGATGATGTCGGTTGCTCTCAATGAC
AAATGTTGATTTCCAGGCCGCTGACATTTTGCGAATCAAGGCGTTGCGTT
CTGACCGACGCGTTCGTTGAACGAAGCGCATCTAGCGTACGTCGAGGCTG
CTGCACCTCGCACGAGGATCAGCGCGATCGATCAGGAAAACATTTCTTCA
GAGAATTTCAGGTTGTAAGAAGAAGGTTGACACACAATCAAAGTAGGTCG
TGCCACCGTCTTGTACCTGGCTACTGCTTGTAGTGACACGATCCTGTGAG
GGCGATGCGAATGCCTTTGGGGAGGAGGTAACCCCATGTTGCAAATTCCT
TGTTCGGGAGGGGGAATCCCCTACGTTGAATCATGTCGATACAACATTTT
GTTTCTCTTTACGCTTGGTGATCTTTCAGGTAGGTTATCAGGCTTTGCCT
CTACACTGGCCCTTGACATGGCTAGCCGGGCGAACTTGCACATTCCCCCC
CCCCCCTCCTCCGCAGTTGGCGGCCCAAGCGAGGGCCGAGAACACATCGG
ACAGGTTGAGCCTGCTCGCGCACAAAGAGCGGAGTGGGAACGAAGCCGCA
GGGACAGGCACGACGGCTACGGCCGACGCGGGGGGCGCGCGGGCGAAAGG
GACACAGGGAGCAGCAGCAGCAGCAACCGGAGCTTCTGAATCCGCGGGGC
CACAGCACCAAGCGGCGCGGCTGTCACCGTCCGCGCAGCTGTCGCAGGCA
GCGCAGGTGGCGACCGTGTCGGGGCTCTCGTGGTCCATCGGAGCGATGCA
GGCGGCCAGGGTGGTGCAAGCGCGGGCGGCGGGGCAGGCGGCGAGCGAGG
CGAGGGCTGCTGCGGCGGGGCAAGCGTCACCTGGAGGGAAAGCAACGGTG
GCAGTGCAGCCAACGCAGCAGCAAACGGCACCGTCAGCCCATCAGGCGGA
ATCGGCCGAAGAAGCCGCGCCGCAATCGGTCGGAGAAGCCGCGCCGCCAT
CGGCCGGAGAACCCGCGCCGCCATCGGCCGGAGAACCCGCGCCGCCATCC
GCCGAAGCGTCGCCTTTTGCGCCGCACGACTCCTCGGATGACGCGGAAGT
GGAGCAAACGAACGAGGAGCAGCAGTCGGAGATCAAGAGGAGGCTTGTGC
TAGTGCAGGCGGAGATTTCGCGGCTGGACAAGGAGGAAGCCGAGTCGGGT
CGGGCGTCAACCGCCGCTGCCGATGGTGTAGAACATCCTCCGGCGACGTT
AGAATCATCATCATCGTCGCCAGCAGCATCGGCAGCAGCAACGACAACAG
CCGCCGTGACGGCACCATCATGGGAGCCGCCGCTGTTCCCCTCCTCCGGC
AACGGGGTGGCAGGCGGTGTGCAGCAGCAGCAGCGGCAGCACGGGCAGCA
AGAGGAGAGGGACGAGGGACAGAAAGAAGGGCTCGGCGAAGGGGCGCCAG
CCGGGCGGTCTGCAGCAACAGCAGCGGCGGCGGCGGCGGCGTCAGCCTTA
GCACCGACACGACTAGCGGCGCGACACAGTGAGAGCATGAACAGCAATAG
CAACAGCTTGGGCTTCGGGTTTTCGCAGCTATTTCGCGCGAGCGGGTGAG
GTTCGCTCGCCTCCCCGCCACGGCACCCCCGGCGAGCAATGTGAGTCCTG
TGTTTCAACGGGGTCCAGACCGGGGCTTTCAGCCAAGGGCAGCGACGGGC
CTGGGTGGAGTCTATTTTTGGCAGCATTGGCTCCACTTTGTAGTGGTATT
GGTGGCGTTGGTATCACTCTGCAGTGGCTGGTACGTTGACAGCACTCTGT
ACCGCAGGTGTGTGCGCCGAGGATCACCCGGTTTTCGTTCGTGTGGGGAA
CCCTGTGATGCTAGGAAAGGAAGAAGAAGGGCGCGGCCACGACTGGCCGT
CGCTGCTGCTGGCGCAAGACGCGTGGCGCTGTGTGGAGAGTTGGAAGCAT
TGTGGACAAGTCACCCCCCGTCGGAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19356:187..2865-

>mRNA_Ecto-sp13_S_contig19356.6205.1 ID=mRNA_Ecto-sp13_S_contig19356.6205.1|Name=mRNA_Ecto-sp13_S_contig19356.6205.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1239bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19356:187..2865- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCGGGAGTCGGAGCTGAACGGCGTCATCGCAAGAGCCAACGCTGCGCT
GGAGGAAAACAACGACCGCCGAAAGGCAAGTGCAGAAGACGCAACCACCC
AAAAACCTCTGGCGGCGGTTGCCGACAGTGAGAGGCAGCTCCTGTCGATC
ATCGCGCAGCGAGAGGCCAAGGCGGCCTACTGGGAAAAGGCAAGTCCGAG
GGCCGAGAACACATCGGACAGGTTGAGCCTGCTCGCGCACAAAGAGCGGA
GTGGGAACGAAGCCGCAGGGACAGGCACGACGGCTACGGCCGACGCGGGG
GGCGCGCGGGCGAAAGGGACACAGGGAGCAGCAGCAGCAGCAACCGGAGC
TTCTGAATCCGCGGGGCCACAGCACCAAGCGGCGCGGCTGTCACCGTCCG
CGCAGCTGTCGCAGGCAGCGCAGGTGGCGACCGTGTCGGGGCTCTCGTGG
TCCATCGGAGCGATGCAGGCGGCCAGGGTGGTGCAAGCGCGGGCGGCGGG
GCAGGCGGCGAGCGAGGCGAGGGCTGCTGCGGCGGGGCAAGCGTCACCTG
GAGGGAAAGCAACGGTGGCAGTGCAGCCAACGCAGCAGCAAACGGCACCG
TCAGCCCATCAGGCGGAATCGGCCGAAGAAGCCGCGCCGCAATCGGTCGG
AGAAGCCGCGCCGCCATCGGCCGGAGAACCCGCGCCGCCATCGGCCGGAG
AACCCGCGCCGCCATCCGCCGAAGCGTCGCCTTTTGCGCCGCACGACTCC
TCGGATGACGCGGAAGTGGAGCAAACGAACGAGGAGCAGCAGTCGGAGAT
CAAGAGGAGGCTTGTGCTAGTGCAGGCGGAGATTTCGCGGCTGGACAAGG
AGGAAGCCGAGTCGGGTCGGGCGTCAACCGCCGCTGCCGATGGTGTAGAA
CATCCTCCGGCGACGTTAGAATCATCATCATCGTCGCCAGCAGCATCGGC
AGCAGCAACGACAACAGCCGCCGTGACGGCACCATCATGGGAGCCGCCGC
TGTTCCCCTCCTCCGGCAACGGGGTGGCAGGCGGTGTGCAGCAGCAGCAG
CGGCAGCACGGGCAGCAAGAGGAGAGGGACGAGGGACAGAAAGAAGGGCT
CGGCGAAGGGGCGCCAGCCGGGCGGAAAGGAAGAAGAAGGGCGCGGCCAC
GACTGGCCGTCGCTGCTGCTGGCGCAAGACGCGTGGCGCTGTGTGGAGAG
TTGGAAGCATTGTGGACAAGTCACCCCCCGTCGGAGTAG
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