mRNA_Ecto-sp13_S_contig19310.6195.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19310.6195.1
Unique NamemRNA_Ecto-sp13_S_contig19310.6195.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19310.6195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19310contigEcto-sp13_S_contig19310:49..1257 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size202
Hectar predicted targeting categoryother localisation
Exons3
Cds size183
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462982.6019936-CDS-Ecto-sp13_S_contig19310:48..1481681462982.6019936-CDS-Ecto-sp13_S_contig19310:48..148Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19310 49..148 -
1681462982.61266-CDS-Ecto-sp13_S_contig19310:391..4621681462982.61266-CDS-Ecto-sp13_S_contig19310:391..462Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19310 392..462 -
1681462982.621328-CDS-Ecto-sp13_S_contig19310:1227..12391681462982.621328-CDS-Ecto-sp13_S_contig19310:1227..1239Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19310 1228..1239 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462982.6295488-UTR-Ecto-sp13_S_contig19310:1239..12571681462982.6295488-UTR-Ecto-sp13_S_contig19310:1239..1257Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19310 1240..1257 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19310.6195.1prot_Ecto-sp13_S_contig19310.6195.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19310 49..1239 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19310.6195.1

>prot_Ecto-sp13_S_contig19310.6195.1 ID=prot_Ecto-sp13_S_contig19310.6195.1|Name=mRNA_Ecto-sp13_S_contig19310.6195.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=61bp
MAPPQQGPGHIGDFCRPSYLVPSKCSVRRGSTHSSSSSSSSSWSCRSELQ
SVYVLALPSQD
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mRNA from alignment at Ecto-sp13_S_contig19310:49..1257-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19310.6195.1 ID=mRNA_Ecto-sp13_S_contig19310.6195.1|Name=mRNA_Ecto-sp13_S_contig19310.6195.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1209bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19310:49..1257- (Ectocarpus species13 EcNAP12_S_4_19m)
GACGCGGGGAGGCAAGAAATGGCCCCACCGGTGAGGTATTTCCGTGTAGA
CTACAGCTGTAGTGGCAGCAACGATCATTGTGCTCTACGACGCTTCGAAG
CACATTTTACGAGGTGTATTCGTACGAGCTTTCATGTGCGAGTATGCATT
CAAGTCAACAAAGTAGATGACAGGACTGCTGCTGTAGACTAGTCTAGTCT
ATCGACGAGTCTACAGTAGTCTCCATGAAAAGCACCCCGTCGGGCATTTG
ACAGCGAGTAAGTGCACAGTACGTCAGCCGACGTCAGTTGGACCAAACGG
TACGCGCGCACGCACTACACTGCAGTACAGCAGGGTAGTCTGCAGCTACC
GGTGTTTGTGTACATCCGCTTGAAGGAGAAAAGGGTGCCCCTGAGCTCTT
TCGGAGATCGGCTCGAATCTTCTGCTGTAGCCTCCTCTCATCAAGTTGCG
CCGCCTGGATCTAGAATTTTCAGACTCGGCCCATGTAGTCATCGGCGAGC
AATGACCTAGCGCGAAACCAGGCCCTGACCGTAGTGCTACAATTGCTTCG
GTTGTAGCATACATACAGCGTACGTACGTCGTGCGTTGAATCCTTGCATC
ATTCGGCAAATGTTTTTTCCCGAGTGACGACCAACGGATGTCGACATGAC
GACAAGATCCGAGGGGCAACATGACAACATGACAGCCACATCAACAACAG
GCTCTTCGCTTATTACTCCGCCCCCACGTCCTAAACGGAGCATAATCCTG
CTCTCCCCTTCCCCCCTTCTCCCATTCTCTCTGGATCTATCTCAGCAACA
AGGGCCAGGACATATCGGAGATTTCTGCCGACCTTCGTACTTGGTGCCGT
CGAAGTGCTCCGTGAGGTAGGTGGGTAAAAGACAAACCCTTTTGGTGTAA
CGGGGTCAAAAATGCAGTTTGGTCGCTAAGCTGTGCTTGATGTATTAAAC
GTACAGGCAGCAACAAGTATCCTCTTCTGGAACGCCCGCTGTTTGAGAGA
GAAAGAGAAAGGCTTTGTCTCTGAGTAAAGAGACCGTCTGCTTTCCAGGA
TCGACGGTTTTGACTATGTTCCTCTTGCTGCTGTCTCTGGTGTTCGCCCT
GTTTTCAAGACGAGGATCCACTCACAGCAGCAGCAGCAGCAGCAGCAGCA
GCTGGAGCTGCAGAAGTGAACTTCAATCTGTCTACGTACTTGCCCTGCCC
TCCCAAGAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19310:49..1257-

>mRNA_Ecto-sp13_S_contig19310.6195.1 ID=mRNA_Ecto-sp13_S_contig19310.6195.1|Name=mRNA_Ecto-sp13_S_contig19310.6195.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19310:49..1257- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCCCACCGCAACAAGGGCCAGGACATATCGGAGATTTCTGCCGACC
TTCGTACTTGGTGCCGTCGAAGTGCTCCGTGAGACGAGGATCCACTCACA
GCAGCAGCAGCAGCAGCAGCAGCAGCTGGAGCTGCAGAAGTGAACTTCAA
TCTGTCTACGTACTTGCCCTGCCCTCCCAAGAT
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