mRNA_Ecto-sp13_S_contig19297.6186.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19297.6186.1
Unique NamemRNA_Ecto-sp13_S_contig19297.6186.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19297.6186.1 vs. uniprot
Match: A0A6H5L2E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E6_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 2.580e-23
Identity = 53/64 (82.81%), Postives = 55/64 (85.94%), Query Frame = 2 
Query:  107 GGHILEDKALQVSTGCGFCGGVGCHTTIHDPPGKSRPLVQSTCTSAPRSDARQEAVALNLGSAR 298
            GGHIL+DK   VST CGFCGGVG  TTIHDPPGK+RPLV STC SAPRSDARQEAVALNL SAR
Sbjct:  403 GGHILKDK---VSTACGFCGGVGRPTTIHDPPGKARPLVHSTCPSAPRSDARQEAVALNLSSAR 463
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BLAST of mRNA_Ecto-sp13_S_contig19297.6186.1 vs. uniprot
Match: A0A6H5K6M3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M3_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 2.410e-21
Identity = 50/66 (75.76%), Postives = 54/66 (81.82%), Query Frame = 2 
Query:  101 HVGGHILEDKALQVSTGCGFCGGVGCHTTIHDPPGKSRPLVQSTCTSAPRSDARQEAVALNLGSAR 298
            HVGG    +K   VST CGFCGGVGC +TIHDPPG++RPLV STC SAPRSDARQEAVALNL SAR
Sbjct: 1076 HVGGDP-GNKTSPVSTVCGFCGGVGCRSTIHDPPGEARPLVHSTCPSAPRSDARQEAVALNLSSAR 1140
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19297.6186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L2E6_9PHAE2.580e-2382.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6M3_9PHAE2.410e-2175.76Reverse transcriptase Ty1/copia-type domain-contai... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19297contigEcto-sp13_S_contig19297:647..1251 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size306
Hectar predicted targeting categoryother localisation
Exons2
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462981.4308581-CDS-Ecto-sp13_S_contig19297:646..7761681462981.4308581-CDS-Ecto-sp13_S_contig19297:646..776Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19297 647..776 +
1681462981.446196-CDS-Ecto-sp13_S_contig19297:1077..12501681462981.446196-CDS-Ecto-sp13_S_contig19297:1077..1250Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19297 1078..1250 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19297.6186.1prot_Ecto-sp13_S_contig19297.6186.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19297 647..1250 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19297.6186.1

>prot_Ecto-sp13_S_contig19297.6186.1 ID=prot_Ecto-sp13_S_contig19297.6186.1|Name=mRNA_Ecto-sp13_S_contig19297.6186.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=101bp
RLAHWAWPRPEDWAREDLMQTLRWTSSTIENETARGRSHFGGQGSAGEHW
LRLLWWRRVPYHHPRSTRQVQATGAVDLYISASERRTPGGCSSEPGQCED
G
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mRNA from alignment at Ecto-sp13_S_contig19297:647..1251+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19297.6186.1 ID=mRNA_Ecto-sp13_S_contig19297.6186.1|Name=mRNA_Ecto-sp13_S_contig19297.6186.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=605bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19297:647..1251+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCTGGCGCATTGGGCGTGGCCCCGTCCGGAGGATTGGGCTCGAGAAGA
TCTAATGCAAACTCTGCGCTGGACAAGTTCAACGATCGAAAATGAGACTG
CACGTGGGAGGTCACATTTTGGAGGACAAGGTGCGGTATTTGTTGTGTGA
AATTGGCATTGGAATGCAAGAACGAGTGAGATTGGACCTGAGCTGGGTCC
TGTTTTGGTCTGCCATGTACGCTGAACACGTACACTGCTTCGTGATTTTT
TATTGGCATTCACTCCACTTGCGTAGCTCTCACCCTGTCCACCAGTGCCG
CTTTTTTGCGAGACGTTGGGCAACGGTGCTTACCGAACGCTCGTGAACTC
ATGCCGCATATACCAATCCGGCTAAGAAATGTCAATGGCACCCTCACGAG
CCATTCATGCTCTCTCTTTTTTTCGTTGTAGGCTCTGCAGGTGAGCACTG
GCTGCGGCTTCTGTGGTGGCGTCGGGTGCCATACCACCATCCACGATCCA
CCAGGCAAGTCCAGGCCACTGGTGCAGTCGACCTGTACATCAGCGCCTCG
GAGCGACGCACGCCAGGAGGCTGTAGCTCTGAACCTGGGCAGTGCGAGGA
TGGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19297:647..1251+

>mRNA_Ecto-sp13_S_contig19297.6186.1 ID=mRNA_Ecto-sp13_S_contig19297.6186.1|Name=mRNA_Ecto-sp13_S_contig19297.6186.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19297:647..1251+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCTGGCGCATTGGGCGTGGCCCCGTCCGGAGGATTGGGCTCGAGAAGA
TCTAATGCAAACTCTGCGCTGGACAAGTTCAACGATCGAAAATGAGACTG
CACGTGGGAGGTCACATTTTGGAGGACAAGGCTCTGCAGGTGAGCACTGG
CTGCGGCTTCTGTGGTGGCGTCGGGTGCCATACCACCATCCACGATCCAC
CAGGCAAGTCCAGGCCACTGGTGCAGTCGACCTGTACATCAGCGCCTCGG
AGCGACGCACGCCAGGAGGCTGTAGCTCTGAACCTGGGCAGTGCGAGGAT
GGG
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