mRNA_Ecto-sp13_S_contig19245.6164.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19245.6164.1
Unique NamemRNA_Ecto-sp13_S_contig19245.6164.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19245.6164.1 vs. uniprot
Match: D8LSG4_ECTSI (Vitamin-K-epoxide reductase (warfarin-sensitive) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSG4_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 9.450e-9
Identity = 27/28 (96.43%), Postives = 28/28 (100.00%), Query Frame = 1 
Query:    1 MSEWGHILSQLGMLPKGHQFDLANATLG 84
            MSEWGHILSQLG+LPKGHQFDLANATLG
Sbjct:   49 MSEWGHILSQLGVLPKGHQFDLANATLG 76
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19245.6164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSG4_ECTSI9.450e-996.43Vitamin-K-epoxide reductase (warfarin-sensitive) n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19245contigEcto-sp13_S_contig19245:1632..2117 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score62.0
Seed ortholog evalue2.9e-07
Seed eggNOG ortholog2880.D8LSG4
Preferred nameVKORC1
Model size486
KEGG rclassRC00970,RC01562
KEGG koko:K05357
KEGG ReactionR03511,R03645,R09992
KEGG Pathwayko00130,ko01110,map00130,map01110
Hectar predicted targeting categoryother localisation
GOsGO:0001501,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006766,GO:0006775,GO:0006807,GO:0006950,GO:0007275,GO:0007596,GO:0007599,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009611,GO:0009987,GO:0010033,GO:0010243,GO:0012505,GO:0014070,GO:0016020,GO:0016491,GO:0016614,GO:0016900,GO:0017144,GO:0017187,GO:0018193,GO:0018200,GO:0018214,GO:0019538,GO:0030193,GO:0031984,GO:0032101,GO:0032501,GO:0032502,GO:0036211,GO:0042060,GO:0042175,GO:0042221,GO:0042362,GO:0042371,GO:0042373,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046677,GO:0047057,GO:0047058,GO:0048513,GO:0048518,GO:0048583,GO:0048731,GO:0048856,GO:0050789,GO:0050817,GO:0050818,GO:0050820,GO:0050878,GO:0050896,GO:0051239,GO:0051240,GO:0055114,GO:0060348,GO:0061041,GO:0065007,GO:0065008,GO:0071704,GO:0080134,GO:0098827,GO:1900046,GO:1901564,GO:1901698,GO:1903034
Exons1
EggNOG free text desc.oxidoreductase activity, acting on the CH-OH group of donors, disulfide as acceptor
EggNOG OGs2CUJS@1,2S4E7@2759
EC1.17.4.4
Cds size486
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462979.7204432-CDS-Ecto-sp13_S_contig19245:1631..21171681462979.7204432-CDS-Ecto-sp13_S_contig19245:1631..2117Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19245 1632..2117 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19245.6164.1prot_Ecto-sp13_S_contig19245.6164.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19245 1632..2117 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19245.6164.1

>prot_Ecto-sp13_S_contig19245.6164.1 ID=prot_Ecto-sp13_S_contig19245.6164.1|Name=mRNA_Ecto-sp13_S_contig19245.6164.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=162bp
MSEWGHILSQLGMLPKGHQFDLANATLGKRRCCSDAAALVPGRQSLPITA
QFCAAIHRSFQHGRQSCSSSCGRQHPMNAAQIVSRNAYSMLLLFESLTKC
PGVTSSTWKASKYSAAFNVPRFPGQPSIGVGISVECHHVPFRPYQRVSRV
SACRRSCVVHV*
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mRNA from alignment at Ecto-sp13_S_contig19245:1632..2117+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19245.6164.1 ID=mRNA_Ecto-sp13_S_contig19245.6164.1|Name=mRNA_Ecto-sp13_S_contig19245.6164.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=486bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19245:1632..2117+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCGAGTGGGGACACATTTTGTCGCAGCTGGGAATGTTGCCGAAGGG
GCACCAGTTTGACCTAGCCAATGCCACCTTGGGTAAGAGGCGTTGTTGCT
CCGATGCTGCCGCCTTAGTCCCTGGCCGCCAATCTCTACCGATTACAGCT
CAGTTTTGTGCTGCCATACATAGGTCCTTCCAGCACGGGAGACAAAGCTG
CAGCTCCAGCTGTGGGAGGCAGCACCCGATGAATGCTGCCCAGATCGTTT
CGCGGAACGCCTATTCCATGCTCTTATTATTCGAAAGCCTGACGAAATGC
CCGGGCGTCACGTCATCCACGTGGAAGGCGTCGAAATATTCTGCGGCTTT
TAACGTACCACGCTTCCCCGGTCAACCGTCAATAGGCGTCGGCATATCCG
TGGAGTGTCACCACGTTCCGTTTCGGCCTTACCAACGAGTGTCACGCGTG
TCTGCGTGTCGGAGATCGTGCGTTGTTCACGTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19245:1632..2117+

>mRNA_Ecto-sp13_S_contig19245.6164.1 ID=mRNA_Ecto-sp13_S_contig19245.6164.1|Name=mRNA_Ecto-sp13_S_contig19245.6164.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=486bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19245:1632..2117+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCGAGTGGGGACACATTTTGTCGCAGCTGGGAATGTTGCCGAAGGG
GCACCAGTTTGACCTAGCCAATGCCACCTTGGGTAAGAGGCGTTGTTGCT
CCGATGCTGCCGCCTTAGTCCCTGGCCGCCAATCTCTACCGATTACAGCT
CAGTTTTGTGCTGCCATACATAGGTCCTTCCAGCACGGGAGACAAAGCTG
CAGCTCCAGCTGTGGGAGGCAGCACCCGATGAATGCTGCCCAGATCGTTT
CGCGGAACGCCTATTCCATGCTCTTATTATTCGAAAGCCTGACGAAATGC
CCGGGCGTCACGTCATCCACGTGGAAGGCGTCGAAATATTCTGCGGCTTT
TAACGTACCACGCTTCCCCGGTCAACCGTCAATAGGCGTCGGCATATCCG
TGGAGTGTCACCACGTTCCGTTTCGGCCTTACCAACGAGTGTCACGCGTG
TCTGCGTGTCGGAGATCGTGCGTTGTTCACGTGTGA
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