mRNA_Ecto-sp13_S_contig19244.6163.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19244.6163.1
Unique NamemRNA_Ecto-sp13_S_contig19244.6163.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19244.6163.1 vs. uniprot
Match: A0A6H5L180_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L180_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 2.140e-48
Identity = 91/118 (77.12%), Postives = 92/118 (77.97%), Query Frame = 2 
Query:   20 MGSPSPGLHLTKYFSPAHCLVRRRGKHATPTPPIFNPGRGVCRRHGLVAMLLVADRSRVVDAFGGVAVGVASALRAGSPPGSECTAAVGLPPPTSXXXXXXXXXXRGQGRRMMVRPRP 373
            M SPSPGLHLTKYFSP  CLVRRR KHATPTPPI NPGRGVCRRHGLVAMLLVADRSRVVDAFGGVAVGVASALRAGSPPGSECTA+                     GRRMMVRPRP
Sbjct:    1 MDSPSPGLHLTKYFSPTQCLVRRRAKHATPTPPIVNPGRGVCRRHGLVAMLLVADRSRVVDAFGGVAVGVASALRAGSPPGSECTAS---------------------GRRMMVRPRP 97
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19244.6163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L180_9PHAE2.140e-4877.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19244contigEcto-sp13_S_contig19244:1838..2210 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size373
Hectar predicted targeting categoryother localisation
Exons1
Cds size354
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462979.659118-UTR-Ecto-sp13_S_contig19244:1837..18561681462979.659118-UTR-Ecto-sp13_S_contig19244:1837..1856Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19244 1838..1856 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462979.6745358-CDS-Ecto-sp13_S_contig19244:1856..22101681462979.6745358-CDS-Ecto-sp13_S_contig19244:1856..2210Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19244 1857..2210 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19244.6163.1prot_Ecto-sp13_S_contig19244.6163.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19244 1857..2210 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19244.6163.1

>prot_Ecto-sp13_S_contig19244.6163.1 ID=prot_Ecto-sp13_S_contig19244.6163.1|Name=mRNA_Ecto-sp13_S_contig19244.6163.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=118bp
MGSPSPGLHLTKYFSPAHCLVRRRGKHATPTPPIFNPGRGVCRRHGLVAM
LLVADRSRVVDAFGGVAVGVASALRAGSPPGSECTAAVGLPPPTSSSSSS
SSSQGRGQGRRMMVRPRP
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mRNA from alignment at Ecto-sp13_S_contig19244:1838..2210+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19244.6163.1 ID=mRNA_Ecto-sp13_S_contig19244.6163.1|Name=mRNA_Ecto-sp13_S_contig19244.6163.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=373bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19244:1838..2210+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGATTGTGAGGTGAGCGAATGGGCTCTCCATCTCCTGGGCTTCATCTCA
CCAAGTACTTCAGCCCGGCGCACTGCCTGGTCCGAAGAAGGGGCAAGCAT
GCGACACCGACACCGCCCATCTTCAACCCAGGAAGAGGCGTATGCCGAAG
GCATGGGCTCGTTGCGATGCTGCTAGTAGCCGACCGATCCAGAGTGGTGG
ATGCGTTTGGAGGGGTGGCGGTAGGAGTAGCTTCTGCGCTTCGAGCTGGG
TCACCGCCTGGGTCGGAATGCACAGCAGCAGTAGGACTGCCGCCTCCGAC
GAGCAGCAGCAGCAGCAGCAGCAGCAGCCAGGGGAGGGGGCAGGGTAGGA
GGATGATGGTTCGACCACGCCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19244:1838..2210+

>mRNA_Ecto-sp13_S_contig19244.6163.1 ID=mRNA_Ecto-sp13_S_contig19244.6163.1|Name=mRNA_Ecto-sp13_S_contig19244.6163.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=354bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19244:1838..2210+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCTCTCCATCTCCTGGGCTTCATCTCACCAAGTACTTCAGCCCGGC
GCACTGCCTGGTCCGAAGAAGGGGCAAGCATGCGACACCGACACCGCCCA
TCTTCAACCCAGGAAGAGGCGTATGCCGAAGGCATGGGCTCGTTGCGATG
CTGCTAGTAGCCGACCGATCCAGAGTGGTGGATGCGTTTGGAGGGGTGGC
GGTAGGAGTAGCTTCTGCGCTTCGAGCTGGGTCACCGCCTGGGTCGGAAT
GCACAGCAGCAGTAGGACTGCCGCCTCCGACGAGCAGCAGCAGCAGCAGC
AGCAGCAGCCAGGGGAGGGGGCAGGGTAGGAGGATGATGGTTCGACCACG
CCCG
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