mRNA_Ecto-sp13_S_contig19241.6162.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19241.6162.1
Unique NamemRNA_Ecto-sp13_S_contig19241.6162.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19241.6162.1 vs. uniprot
Match: D7FUV2_ECTSI (Methylase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUV2_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 1.370e-10
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:    1 LDDLESTISMRTRSSTFSHSTRSRRGVMHQNRIVDAM 111
            LDD+ESTISMRTRS+TFSHSTRSRRG+MHQNRIV AM
Sbjct:  145 LDDIESTISMRTRSTTFSHSTRSRRGIMHQNRIVYAM 181
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19241.6162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUV2_ECTSI1.370e-1089.19Methylase, putative n=1 Tax=Ectocarpus siliculosus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19241contigEcto-sp13_S_contig19241:2359..3221 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size243
Hectar predicted targeting categoryother localisation
Exons2
Cds size216
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462979.5956726-CDS-Ecto-sp13_S_contig19241:2358..24911681462979.5956726-CDS-Ecto-sp13_S_contig19241:2358..2491Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19241 2359..2491 -
1681462979.6147008-CDS-Ecto-sp13_S_contig19241:3111..31941681462979.6147008-CDS-Ecto-sp13_S_contig19241:3111..3194Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19241 3112..3194 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462979.6291838-UTR-Ecto-sp13_S_contig19241:3194..32211681462979.6291838-UTR-Ecto-sp13_S_contig19241:3194..3221Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19241 3195..3221 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19241.6162.1prot_Ecto-sp13_S_contig19241.6162.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19241 2359..3194 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19241.6162.1

>prot_Ecto-sp13_S_contig19241.6162.1 ID=prot_Ecto-sp13_S_contig19241.6162.1|Name=mRNA_Ecto-sp13_S_contig19241.6162.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=72bp
MRTRSSTFSHSTRSRRGVMHQNRIVDAMAPHEIEAMQKKRDEEAAKRKLI
ERATRAEAKAKAIAAATETDER
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mRNA from alignment at Ecto-sp13_S_contig19241:2359..3221-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19241.6162.1 ID=mRNA_Ecto-sp13_S_contig19241.6162.1|Name=mRNA_Ecto-sp13_S_contig19241.6162.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=863bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19241:2359..3221- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGGACGACCTAGAGTCGACAATATCGATGCGAACGCGCAGCAGCACGTT
TTCGCACTCAACGCGGTCACGACGGGGTGTCATGCACCAAAACCGGATTG
TTGATGCCATGTGAGTGCCATGTACCGCAGGAGGAAACGACCACCGCGCT
TTAGAGGCGCTCGTTTAAGGAGAAAAGACGGAATAAACGCTATCCTTTGC
TCAAAGCAACAAGACATTCCACCTTCGAGAAGAAGTTAAGGCACTAGACT
AACAATATTACAAGCAGGGTTGCGTCGTGTAGGAGTAGATGTCCGGCGGG
GTGCATTGTGTTTCTTGAAACATACGGCGCCCCGGAGGGCAGAAAACACG
TCAATTGTGTGCCGCTTTCCGGTAAACGTGTGGTATGGACTCAACCCCAA
ACACTATGAACCAGTACGAGTGGCATGAACCTATGAAGTTCTGAGAGTTG
AGGTGGGGTCTCCGGTTGTTTTCTAAATTACGAGGAAAGCAGAACCAAAA
CCAATCGAAGGCTCGAAGCAGGTAAGATTAGCGAAGGGCGTGATAGACAC
GACGGCATCTACTCCGGAGTATTTTGTCTTGGTAAAAACAGGGCCGACAG
GACCTTCCCTGGTGTGTAAAGTGACCTTCCAACACGCCATCTCACTCAAG
CACGCGCGGGGAGATTCAACTAAACGTGATATCGGCAACCTTGCGAATAC
ACCCGCCAACGGCCGGACTTCACCCAATAGGGCACCGCACGAGATCGAAG
CGATGCAGAAAAAGCGAGACGAAGAGGCGGCAAAGCGGAAGCTAATCGAA
CGAGCTACCAGAGCGGAGGCAAAGGCAAAGGCGATAGCGGCGGCAACGGA
AACTGACGAGCGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19241:2359..3221-

>mRNA_Ecto-sp13_S_contig19241.6162.1 ID=mRNA_Ecto-sp13_S_contig19241.6162.1|Name=mRNA_Ecto-sp13_S_contig19241.6162.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19241:2359..3221- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGAACGCGCAGCAGCACGTTTTCGCACTCAACGCGGTCACGACGGGG
TGTCATGCACCAAAACCGGATTGTTGATGCCATGGCACCGCACGAGATCG
AAGCGATGCAGAAAAAGCGAGACGAAGAGGCGGCAAAGCGGAAGCTAATC
GAACGAGCTACCAGAGCGGAGGCAAAGGCAAAGGCGATAGCGGCGGCAAC
GGAAACTGACGAGCGC
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