mRNA_Ecto-sp13_S_contig19238.6157.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19238.6157.1
Unique NamemRNA_Ecto-sp13_S_contig19238.6157.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19238.6157.1 vs. uniprot
Match: A0A6H5KMQ7_9PHAE (PlsC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KMQ7_9PHAE)

HSP 1 Score: 389 bits (1000), Expect = 4.650e-136
Identity = 179/184 (97.28%), Postives = 183/184 (99.46%), Query Frame = 1 
Query:    1 MFRQAVKLACHTWFGACLTWGLIIDWAGCVVITTILPDGQAQRRCCQWSHYVFRYFMLSSCPWIRVSRPPVEEVTRLLHRDRVCVLMNHTSFGDSIMFVATTPSNIIWRYRTLMKSTLFDWPFLGGVCRMVGHFPVLFRSKDEDSFAVDKPEQAKIMEKVKAHVESDGCLCLFPEGKINRNPAV 552
            MFRQAVKLACHTWFGACLTWGLIIDWAGCVVITTILPDGQAQRRCCQWSHYVFR FMLSSCPWIRVSRPPVEEVTRLL+R+RVCVLMNHTSFGDS+MFVATTPSNIIWRYRTLMKSTLFDWPFLGGVCRMVGHFPVLFRSKDE+SFAVDKPEQAKIMEKVKAHVESDGCLCLFPEGKINRNPAV
Sbjct:    1 MFRQAVKLACHTWFGACLTWGLIIDWAGCVVITTILPDGQAQRRCCQWSHYVFRCFMLSSCPWIRVSRPPVEEVTRLLNRERVCVLMNHTSFGDSVMFVATTPSNIIWRYRTLMKSTLFDWPFLGGVCRMVGHFPVLFRSKDENSFAVDKPEQAKIMEKVKAHVESDGCLCLFPEGKINRNPAV 184
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BLAST of mRNA_Ecto-sp13_S_contig19238.6157.1 vs. uniprot
Match: A0A835Z6S5_9STRA (Acyltransferase-like protein, copy 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6S5_9STRA)

HSP 1 Score: 192 bits (489), Expect = 2.850e-58
Identity = 89/184 (48.37%), Postives = 117/184 (63.59%), Query Frame = 1 
Query:    1 MFRQAVKLACHTWFGACLTWGLIIDWAGCVVITTILPDG--QAQRRCCQWSHYVFRYFMLSSCPWIRVSRPPVEEVTRLLHRDRVCVLMNHTSFGDSIMFVATTPSNIIWRYRTLMKSTLFDWPFLGGVCRMVGHFPVLFRSKDEDSFAVDKPEQAKIMEKVKAHVESDGCLCLFPEGKINRNP 546
            M    +   C  WFG C     I+ WAGC+V+  I+P    Q + R C   HY FRY ++  CPWIR+  PP EE  R+L RDRV V +NHTSF DS++FVA  P ++++RYRTLMK  L + P LGG+    GHFPV F +  E+ F+VDK   A +ME V+AHV   GCL +FPEG++NR+P
Sbjct:    1 MGTPVLHTVCKFWFGTCTLVCFILTWAGCMVLRYIVPGTLQQKEARVCTLCHYTFRYMIMLPCPWIRLKVPPAEEWRRILGRDRVFVALNHTSFMDSVLFVACVPGDVLYRYRTLMKKELLELPLLGGISACAGHFPVHFLTPREEEFSVDKMIMAGVMELVRAHVARGGCLSIFPEGRVNRSP 184
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BLAST of mRNA_Ecto-sp13_S_contig19238.6157.1 vs. uniprot
Match: A0A0M9G1R4_9TRYP (Putative mitochondrial acyltransferase n=1 Tax=Leptomonas pyrrhocoris TaxID=157538 RepID=A0A0M9G1R4_9TRYP)

HSP 1 Score: 108 bits (270), Expect = 2.750e-25
Identity = 62/188 (32.98%), Postives = 93/188 (49.47%), Query Frame = 1 
Query:    7 RQAVKLACHTWFGACLTWGLIIDWAGCVVITT------ILPDGQAQRRCCQWSHYVFRYFMLSSCPWIRVSRPPVEEVTRLLHRDRVCVLMNHTSFGDSIMFVATTPSNIIWRYRTLMKSTLFDWPFLGGVCRMVGHFPVLFRSKDEDSFAVDKPEQAKIMEKVKAHVESDGCLCLFPEGKINRNPAV 552
            R+   +    WF   L   LI+   GC V +       ++P G AQ       H VF+YF   + P +     P      +L    VC    H SF D ++F+ T P + +WR  T  KS+L + P  G V +  G+FPV F +++  SF V+K +QA ++  V+A +     +C FPEG +NR+PAV
Sbjct:   22 RKLPTVVMRVWFTVHLFVSLIVVNVGCHVFSFLTSPLHVMPIGTAQALSRSLKHVVFKYFFAPAIPHVHRVEMPGSLPFSVLKSGAVCAC--HCSFFDPLLFLFTAPLSFLWRGATFFKSSLLNLPLFGYVLKCTGYFPVYFANENSPSFHVNKEKQAAVVADVEAWLGKGNNMCFFPEGVMNRDPAV 207
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BLAST of mRNA_Ecto-sp13_S_contig19238.6157.1 vs. uniprot
Match: G0TTG1_TRYVY (Putative acyltransferase n=1 Tax=Trypanosoma vivax (strain Y486) TaxID=1055687 RepID=G0TTG1_TRYVY)

HSP 1 Score: 87.8 bits (216), Expect = 1.630e-17
Identity = 57/187 (30.48%), Postives = 85/187 (45.45%), Query Frame = 1 
Query:    7 RQAVKLACHTWFGACLTWGLIIDWAGCVVITTILPDGQAQRR-----CCQWSHYVFRYFMLSSCPWIRVSRPPVEEVTRLLHRDRVCVLMNHTSFGDSIMFVATTPSNIIWRYRTLMKSTLFDWPFLGGVCRMVGHFPVLFRSKDEDSFAVDKPEQAKIMEKVKAHVESDGCLCLFPEGKINRNPAV 552
            R    +    WF  C+   ++  +  C  +          +R      C  S+ +    +L+  P IRV +   + +     +D   +   HTSF D+++F++      + R + L KS L+  P LG V    GH PV F S D DSF VDK +QA I       + S G LC+FPEG +NR P V
Sbjct:   22 RWCPTIVMRIWFSMCILLVIVPAYIVCGAVNAAAKMNWMSKRRSESISCVVSYLLLGKVLLTLSPHIRV-KVMKQSLGIKDFQDGGVMCACHTSFFDTLLFLSLASLQYMHRAKALAKSALWKVPLLGTVVEACGHLPVYFTSPDVDSFGVDKEKQAVISVITDEFLTSQGNLCIFPEGVMNRTPEV 207
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BLAST of mRNA_Ecto-sp13_S_contig19238.6157.1 vs. uniprot
Match: A0A7S1B2B3_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1B2B3_NOCSC)

HSP 1 Score: 63.2 bits (152), Expect = 1.770e-8
Identity = 46/138 (33.33%), Postives = 65/138 (47.10%), Query Frame = 1 
Query:  142 WSHYVFRYFMLSSCPWIRVSRPPVEEVTRLLH----RDRVCVLMNHTSFGDSIMFVATTPSNIIWRYRTLMKSTLFDWPFLGGVCRMVGHFPVLFRS--KDEDSFAVDKPEQAKIMEKVKAHVESDGCLCLFPEGKIN 537
            W+ +    F L SC WIRV    + +    +     R R+ +LMNH+SF DSIM +   P +     + L  S +F  P  G + R +GH PV F     D D F+VD  E      K +  V S      FPEG+++
Sbjct:  103 WAFWNLAVF-LCSC-WIRVHTEGLADFRAGMSNNDMRPRI-ILMNHSSFTDSIMAMCNLPMSGCSNVKILAASRIFKMPLFGTMMRGMGHVPVPFTEGLTDRDDFSVDVAEMEVSGRKFEEWVASGNVGAWFPEGRLS 237
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19238.6157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KMQ7_9PHAE4.650e-13697.28PlsC domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835Z6S5_9STRA2.850e-5848.37Acyltransferase-like protein, copy 2 n=1 Tax=Tribo... [more]
A0A0M9G1R4_9TRYP2.750e-2532.98Putative mitochondrial acyltransferase n=1 Tax=Lep... [more]
G0TTG1_TRYVY1.630e-1730.48Putative acyltransferase n=1 Tax=Trypanosoma vivax... [more]
A0A7S1B2B3_NOCSC1.770e-833.33Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19238contigEcto-sp13_S_contig19238:1136..3337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score388.7
Seed ortholog evalue1.6e-105
Seed eggNOG ortholog2880.D7FWP2
Model size552
Hectar predicted targeting categorysignal peptide
Exons3
EggNOG free text desc.Acyltransferase
EggNOG OGs2DZHH@1,2S71D@2759
Ec32 ortholog descriptionPhospholipid/glycerol acyltransferase
Ec32 orthologEc-06_001400.1
Cds size552
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462979.1288676-CDS-Ecto-sp13_S_contig19238:1135..14951681462979.1288676-CDS-Ecto-sp13_S_contig19238:1135..1495Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19238 1136..1495 +
1681462979.1388857-CDS-Ecto-sp13_S_contig19238:2829..29461681462979.1388857-CDS-Ecto-sp13_S_contig19238:2829..2946Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19238 2830..2946 +
1681462979.14713-CDS-Ecto-sp13_S_contig19238:3262..33371681462979.14713-CDS-Ecto-sp13_S_contig19238:3262..3337Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19238 3263..3337 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19238.6157.1prot_Ecto-sp13_S_contig19238.6157.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19238 1136..3337 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19238.6157.1

>prot_Ecto-sp13_S_contig19238.6157.1 ID=prot_Ecto-sp13_S_contig19238.6157.1|Name=mRNA_Ecto-sp13_S_contig19238.6157.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=184bp
MFRQAVKLACHTWFGACLTWGLIIDWAGCVVITTILPDGQAQRRCCQWSH
YVFRYFMLSSCPWIRVSRPPVEEVTRLLHRDRVCVLMNHTSFGDSIMFVA
TTPSNIIWRYRTLMKSTLFDWPFLGGVCRMVGHFPVLFRSKDEDSFAVDK
PEQAKIMEKVKAHVESDGCLCLFPEGKINRNPAV
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mRNA from alignment at Ecto-sp13_S_contig19238:1136..3337+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19238.6157.1 ID=mRNA_Ecto-sp13_S_contig19238.6157.1|Name=mRNA_Ecto-sp13_S_contig19238.6157.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2202bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19238:1136..3337+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTCGGCAAGCGGTGAAATTGGCCTGCCACACCTGGTTCGGCGCGTG
CTTGACGTGGGGGCTCATCATCGATTGGGCTGGATGCGTGGTCATCACTA
CGATCTTGCCAGACGGCCAGGCCCAGAGGAGGTGTTGCCAGTGGAGTCAT
TACGTGTTCCGGTACTTCATGCTCAGCTCCTGCCCTTGGATCCGCGTGTC
TCGGCCGCCAGTGGAGGAAGTCACGAGGCTGCTACACCGCGACAGGGTGT
GCGTGTTGATGAACCACACGAGCTTCGGCGACAGTATCATGTTCGTCGCC
ACTACTCCCTCCAACATCATCTGGCGCTACCGGACCCTGATGAAGAGCAC
CCTGTTTGATGTGAGAAGACCAGTTCAAGAGAAAGTGGAGGCGTCGTAAA
GATTGGATTGGAGATGTACGGCGTTGGTACTTGTATCGGAAGCTTTCGAA
ACCGCACATCATCTCGCTCACGTACAACCAAGATACGTTAAATCGCGTAC
CACGGCTGTACCGTTACATTTGTCGTTGTGTTGTAGAAACGCTGTAGATG
TGCCGTGCGTATCTCTACATGAGATTGATGCAAAGGTTGCATCCTTCCAT
TGACCAGGTTAGAGCATCACTGCTGTGCAAAGTTGGAACCAGTCAGGATG
AGGTACTACAGTACAGTCAGCGCCCGCGGTGAAGAAACGCTTATTTCAGG
TCCAGCCCCGAACTCTTTTTGTGGGCTTTTAGCTCAGCGTATGTCGTCCA
ATTTCGTATGTCAAGTTTCTTCTTTTTCGTGCCGCCAAATCCTGCCGAAT
CTCTTAAATGGACAATTTCTTATTTTCTCTGCTTGCTTACATTACACAAC
GTTCAAATTAAACAAATGATTTGCCCTCACTAGAGCTGGCGCAGAGCACC
ATCAACACCCAACAGCAGACAGCACATCGTTGTCCGCAGCCTGTCTGGTG
TGCTGTGCCAGAGCCGGAGCGCCATAGAGTGCCAGACAGCCGGCAGGGGG
CCGGAGGGGGCGTCGTAGAAAAAGCACACGCCCCCCTCGCCGTTTAACCA
ATAATGCACTATGGGAAGGGGGCGTGGTAGTGGGAGAGAGATGCGAGGAG
CTGTGGGGTGTTTCTTTTTCGACACACTCCCCCATACCCCCTCGTTTCTA
ATGTAGTAGGGCGGCGGCGGTCGCCGCTATTTCTGATTGAGACATTTCTT
ACTGGGAGACCCAGATTGAGACACGTTTCTTAACTTTATTTTCGTATTTT
TCGTGGAAAAGTGAGCCTGAATATCTTCAAAAAATATTTCTTTATCGCGG
GTGCTAACTGTAACCCCTCGAGTTCCTTGGCAGTTCGAGGTGCCGCGTGC
GAGTCCTAGAGACGACACACCGCATCCTCTTTCCCCAGGTACTGCTGTGT
AGCCGTTCCAGGGGTGGCTTGTGTCGGCATTCGAGGATGCTTCGGAGAGG
CCGCCGCCATTGCCCAGTTGTCACGATCTCCCTCCGTCAGCGCCCGCGCT
GCACAGTTTGAACGCAAACTGTGTCATTCTGCACATGATCGATATCGCTA
CCCAATTCCGTTGACCCGGGTGTAACAGAGACGTCTTCTACGTGCACTTC
TTTACCATCGAACAAAATGAATATGCTTCCAATCACCATCATTTTTGTTG
CCCCCGTCCTTGCCACACCAATTGCCTTGTTGTGGGTAACCCAGTGGCCC
TTTCTGGGTGGTGTATGTAGAATGGTGGGACACTTTCCCGTTCTCTTCCG
AAGCAAGGACGAGGATTCGTTCGCTGTGGACAAGCCGGAGCAAGCGAAGA
TAATGGAGAAGGTGAAATCGTTTTGTTGTGTCATGCTTGCTTACCTTTGT
CGTGTGTACACGTGTGCACTGCAAAGGACAGGAGTAGCAACTGCTGCTTG
AGAGTGTCCTGCTGCGTTGTGGCCGAGACACAAAAACATTGAATAGAATA
TCTCACAATACGATGACTTTTACATACTGCCTTTATCGCATAGTCTACAC
GACTAAGAAGTTATCCTTTTTTTGCTGTCATTGCCGCGATTTACTTAGGA
TACGAAAGTACGCGGCAGCACCGCACTCGAGTGCTCTCCTCGAAGCTTCA
ACCAGTGTAGTCCCGCCTATCCCCCAGGTGAAAGCACACGTCGAGTCAGA
CGGGTGCCTGTGCCTGTTCCCCGAGGGAAAAATCAACCGCAACCCTGCAG
TC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19238:1136..3337+

>mRNA_Ecto-sp13_S_contig19238.6157.1 ID=mRNA_Ecto-sp13_S_contig19238.6157.1|Name=mRNA_Ecto-sp13_S_contig19238.6157.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=552bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19238:1136..3337+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTCGGCAAGCGGTGAAATTGGCCTGCCACACCTGGTTCGGCGCGTG
CTTGACGTGGGGGCTCATCATCGATTGGGCTGGATGCGTGGTCATCACTA
CGATCTTGCCAGACGGCCAGGCCCAGAGGAGGTGTTGCCAGTGGAGTCAT
TACGTGTTCCGGTACTTCATGCTCAGCTCCTGCCCTTGGATCCGCGTGTC
TCGGCCGCCAGTGGAGGAAGTCACGAGGCTGCTACACCGCGACAGGGTGT
GCGTGTTGATGAACCACACGAGCTTCGGCGACAGTATCATGTTCGTCGCC
ACTACTCCCTCCAACATCATCTGGCGCTACCGGACCCTGATGAAGAGCAC
CCTGTTTGATTGGCCCTTTCTGGGTGGTGTATGTAGAATGGTGGGACACT
TTCCCGTTCTCTTCCGAAGCAAGGACGAGGATTCGTTCGCTGTGGACAAG
CCGGAGCAAGCGAAGATAATGGAGAAGGTGAAAGCACACGTCGAGTCAGA
CGGGTGCCTGTGCCTGTTCCCCGAGGGAAAAATCAACCGCAACCCTGCAG
TC
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