mRNA_Ecto-sp13_S_contig19238.6156.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19238.6156.1
Unique NamemRNA_Ecto-sp13_S_contig19238.6156.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig19238.6156.1 vs. uniprot
Match: D7FWP1_ECTSI (HIT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWP1_ECTSI)

HSP 1 Score: 205 bits (521), Expect = 1.810e-65
Identity = 98/100 (98.00%), Postives = 99/100 (99.00%), Query Frame = 1
Query:    1 GVVWNAGGEMQSCLFCDFANHTKEKELLYEDDLVIAFSPVKPAAKQHILVVPKRHISTVGDLVETDTPLLDRMKEVAVKLLKCDASQTQLSFHIPPWNSV 300
            GVVWNA GEMQSCLFCDFANHTKEKELLYEDDLVIAFSP+KPAAKQHILVVPKRHISTVGDLVETDTPLLDRMKEVAVKLLKCDASQTQLSFHIPPWNSV
Sbjct:   38 GVVWNARGEMQSCLFCDFANHTKEKELLYEDDLVIAFSPLKPAAKQHILVVPKRHISTVGDLVETDTPLLDRMKEVAVKLLKCDASQTQLSFHIPPWNSV 137          
BLAST of mRNA_Ecto-sp13_S_contig19238.6156.1 vs. uniprot
Match: UPI00077B98B9 (histidine triad nucleotide-binding protein 3 isoform X1 n=2 Tax=Tetranychus urticae TaxID=32264 RepID=UPI00077B98B9)

HSP 1 Score: 93.2 bits (230), Expect = 1.110e-21
Identity = 39/103 (37.86%), Postives = 64/103 (62.14%), Query Frame = 1
Query:    1 GVVWNAGGEMQSCLFCDFANHTKEKELLYEDDLVIAFSPVKPAAKQHILVVPKRHISTVGDLVETDTPLLDRMKEVAVKLLK---CDASQTQLSFHIPPWNSV 300
            G+  N    + +C+FC   +   E  + YEDD  +AF  + PA+  HIL++PKRHI  +  L   D P+++RMK++A+ L++    D++ T+L FH PP+NS+
Sbjct:   27 GMARNINPVINNCIFCSIVSRKAEATIKYEDDAYLAFKDIYPASDTHILIIPKRHIKDIKSLTTDDLPIIERMKDIAINLIRENALDSNDTRLGFHKPPFNSI 129          
BLAST of mRNA_Ecto-sp13_S_contig19238.6156.1 vs. uniprot
Match: A0A197JVJ0_9FUNG (HIT domain-containing protein (Fragment) n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JVJ0_9FUNG)

HSP 1 Score: 84.3 bits (207), Expect = 9.840e-19
Identity = 39/101 (38.61%), Postives = 62/101 (61.39%), Query Frame = 1
Query:   37 CLFCDFANHTKEKELLYEDDLVIAFSPVKPAAKQHILVVPKRHISTVGDLVETDTPLLDRMKEVAVKLLK---CDASQTQLSFHIPPWNSVGKCCFRVTGG 330
            C+FC  A+ +   +L+Y+DD + AF+ + PAA+ HIL+VP  H+ +V  +     PLL++M +  + LLK    D  Q++L FH+PP+N+V      V GG
Sbjct:   14 CIFCAIADGSTPTKLVYKDDEIAAFNDINPAAETHILIVPVDHVKSVKTMTADHIPLLEKMHQKGIDLLKERGHDPEQSRLGFHVPPFNTVDHLHLHVVGG 114          
BLAST of mRNA_Ecto-sp13_S_contig19238.6156.1 vs. uniprot
Match: K5WFJ8_PHACS (HIT domain-containing protein n=1 Tax=Phanerochaete carnosa (strain HHB-10118-sp) TaxID=650164 RepID=K5WFJ8_PHACS)

HSP 1 Score: 84.0 bits (206), Expect = 5.560e-18
Identity = 42/110 (38.18%), Postives = 63/110 (57.27%), Query Frame = 1
Query:   13 NAGGEMQSCLFCDFANHTKEKELLYEDDLVIAFSPVKPAAKQHILVVPKRHISTVGDLVETDTPLLDRMKEVAVKLL---KCDASQTQLSFHIPPWNSVGKCCFRVTGGP 333
            + G  +  C+FCD +   K  ++++ED+  I F+   PAAK H+LV+PKRH+ +V  L  +D P++ RM E+   LL      A+   + FHIPP+NSV      V G P
Sbjct:   27 DTGYRIPGCVFCDISRE-KGFDVVWEDETFIVFNDHSPAAKHHLLVIPKRHVESVKTLKPSDAPMIQRMSEIGHSLLGELSVPAASRMMGFHIPPFNSVDHLHLHVQGLP 135          
BLAST of mRNA_Ecto-sp13_S_contig19238.6156.1 vs. uniprot
Match: A0A7J7BDH5_9COLE (HIT domain-containing protein n=1 Tax=Abscondita terminalis TaxID=2069292 RepID=A0A7J7BDH5_9COLE)

HSP 1 Score: 82.4 bits (202), Expect = 8.000e-18
Identity = 34/94 (36.17%), Postives = 57/94 (60.64%), Query Frame = 1
Query:   28 MQSCLFCDFANHTKEKELLYEDDLVIAFSPVKPAAKQHILVVPKRHISTVGDLVETDTPLLDRMKEVAVKLLK---CDASQTQLSFHIPPWNSV 300
            M +C+FC+  +  +  + +YED+ +I F+ ++PAAK H L +PK+HI  V  L   D P L+R+  +   +LK   C     ++ FH+PP+NS+
Sbjct:    1 MSNCVFCNIVSGKQPTDFVYEDEEIIVFNDIRPAAKFHYLAIPKKHIQDVNSLTIEDIPFLERLIAIGKNVLKEAGCSIDDARIGFHVPPFNSI 94          
BLAST of mRNA_Ecto-sp13_S_contig19238.6156.1 vs. uniprot
Match: U9TE69_RHIID (HIT domain-containing protein n=4 Tax=Rhizophagus irregularis TaxID=588596 RepID=U9TE69_RHIID)

HSP 1 Score: 82.0 bits (201), Expect = 1.310e-17
Identity = 39/104 (37.50%), Postives = 59/104 (56.73%), Query Frame = 1
Query:   31 QSCLFCDFANHTKEKELLYEDDLVIAFSPVKPAAKQHILVVPKRHISTVGDLVETDTPLLDRMKEVAVKLLK---CDASQTQLSFHIPPWNSVGKCCFRVTGGP 333
            Q C+FCD      +K+++YED+ ++AF  + PAAK H+L++P+ HI  V  L   D PLL  M +   +LL       S+ ++ FH+PP+NSV        G P
Sbjct:   14 QDCVFCDLT----DKKIVYEDERIVAFHDISPAAKLHLLIIPRNHIDNVDSLTPNDAPLLKHMIDTGNQLLSESGYQLSERRVGFHVPPYNSVHHLHLHCIGLP 113          
BLAST of mRNA_Ecto-sp13_S_contig19238.6156.1 vs. uniprot
Match: UPI000418CA46 (histidine triad nucleotide-binding protein n=2 Tax=Marinospirillum TaxID=64968 RepID=UPI000418CA46)

HSP 1 Score: 80.5 bits (197), Expect = 2.390e-17
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 1
Query:   28 MQSCLFCDFANHTKEKELLYEDDLVIAFSPVKPAAKQHILVVPKRHISTVGDLVETDTPLLDRMKEVAVKLLK 246
            MQ C+FC  A H     +LYEDD VIAF+ + P A  H+LV+PKRHI+T+ DL E D  L+ R++  A KL K
Sbjct:    1 MQDCIFCKIAKHELPATVLYEDDQVIAFNDIDPKAPHHLLVIPKRHITTLNDLQEGDEALVGRLQVTAAKLAK 73          
BLAST of mRNA_Ecto-sp13_S_contig19238.6156.1 vs. uniprot
Match: A0A6P8HG88_ACTTE (histidine triad nucleotide-binding protein 3-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HG88_ACTTE)

HSP 1 Score: 80.5 bits (197), Expect = 5.370e-17
Identity = 37/96 (38.54%), Postives = 57/96 (59.38%), Query Frame = 1
Query:   22 GEMQSCLFCDFANHTKEKELLYEDDLVIAFSPVKPAAKQHILVVPKRHISTVGDLVETDTPLLDRMKEVAVKLL---KCDASQTQLSFHIPPWNSV 300
            G  ++C+FC  +   KE ++ YED+  +AF  ++PAAK H L++PK H      L      L+ +MKEVA K+L   K D+   ++ FH PP+NS+
Sbjct:    7 GRKENCIFCKISAKEKEAQIAYEDEEFVAFPDIQPAAKYHYLIIPKVHYGNPKSLDGRQLELVQKMKEVAYKILEQEKVDSDDVRIGFHWPPFNSI 102          
BLAST of mRNA_Ecto-sp13_S_contig19238.6156.1 vs. uniprot
Match: A0A6D2K589_9BRAS (HIT domain-containing protein n=5 Tax=Coluteocarpeae TaxID=1394505 RepID=A0A6D2K589_9BRAS)

HSP 1 Score: 79.7 bits (195), Expect = 1.100e-16
Identity = 44/98 (44.90%), Postives = 60/98 (61.22%), Query Frame = 1
Query:   22 GEMQSCLFCDFA-NHTKEKELLYEDDLVIAFSPVKPAAKQHILVVPKRHISTVGDLV--ETDTPLLDRMKEVAVKLLKCDASQT--QLSFHIPPWNSV 300
            G  Q+C+FC    N T    LL+ D+ V+AF  +KPAA++H LV+PK HI TV DL   + D  L+  M  V  +LL+ DA Q+  +  FH PP+NSV
Sbjct:    3 GANQACIFCQIVRNPTSTTRLLHNDEKVVAFQDIKPAAQRHYLVIPKEHIPTVRDLKRRDEDYSLVSHMLSVGQELLQKDAPQSIHRFGFHQPPFNSV 100          
BLAST of mRNA_Ecto-sp13_S_contig19238.6156.1 vs. uniprot
Match: A0A5N4AHM2_PHOPY (HIT domain-containing protein n=2 Tax=Photinus pyralis TaxID=7054 RepID=A0A5N4AHM2_PHOPY)

HSP 1 Score: 80.5 bits (197), Expect = 1.390e-16
Identity = 34/91 (37.36%), Postives = 57/91 (62.64%), Query Frame = 1
Query:   37 CLFCDFANHTKEKELLYEDDLVIAFSPVKPAAKQHILVVPKRHISTVGDLVETDTPLLDRMKEVAVKLLK---CDASQTQLSFHIPPWNSV 300
            C+FC+  +     EL+YED+ ++ F  +KPAA+ H L V KRHI  V +L   D  L++++ EV  ++L+    D +  ++ FH+PP+NS+
Sbjct:   53 CIFCNIISGKHPNELIYEDEELVIFKDIKPAAEHHYLAVTKRHIKNVNELTTNDKELVEKLMEVGKRVLQELGADVNDLRMGFHVPPFNSI 143          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19238.6156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWP1_ECTSI1.810e-6598.00HIT domain-containing protein n=2 Tax=Ectocarpus T... [more]
UPI00077B98B91.110e-2137.86histidine triad nucleotide-binding protein 3 isofo... [more]
A0A197JVJ0_9FUNG9.840e-1938.61HIT domain-containing protein (Fragment) n=1 Tax=L... [more]
K5WFJ8_PHACS5.560e-1838.18HIT domain-containing protein n=1 Tax=Phanerochaet... [more]
A0A7J7BDH5_9COLE8.000e-1836.17HIT domain-containing protein n=1 Tax=Abscondita t... [more]
U9TE69_RHIID1.310e-1737.50HIT domain-containing protein n=4 Tax=Rhizophagus ... [more]
UPI000418CA462.390e-1750.68histidine triad nucleotide-binding protein n=2 Tax... [more]
A0A6P8HG88_ACTTE5.370e-1738.54histidine triad nucleotide-binding protein 3-like ... [more]
A0A6D2K589_9BRAS1.100e-1644.90HIT domain-containing protein n=5 Tax=Coluteocarpe... [more]
A0A5N4AHM2_PHOPY1.390e-1637.36HIT domain-containing protein n=2 Tax=Photinus pyr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19238contigEcto-sp13_S_contig19238:283..615 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score187.2
Seed ortholog evalue3.8e-45
Seed eggNOG ortholog2880.D7FWP1
Model size333
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.nucleoside phosphate binding
EggNOG OGsCOG0537@1,KOG4359@2759
Ec32 ortholog descriptionHistidine triad (HIT) protein
Ec32 orthologEc-06_001390.1
Cds size306
COG Functional cat.FG
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462979.0939324-CDS-Ecto-sp13_S_contig19238:282..5881681462979.0939324-CDS-Ecto-sp13_S_contig19238:282..588Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19238 283..588 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462979.1037724-UTR-Ecto-sp13_S_contig19238:588..6151681462979.1037724-UTR-Ecto-sp13_S_contig19238:588..615Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19238 589..615 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19238.6156.1prot_Ecto-sp13_S_contig19238.6156.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19238 283..588 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19238.6156.1

>prot_Ecto-sp13_S_contig19238.6156.1 ID=prot_Ecto-sp13_S_contig19238.6156.1|Name=mRNA_Ecto-sp13_S_contig19238.6156.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=102bp
MQSCLFCDFANHTKEKELLYEDDLVIAFSPVKPAAKQHILVVPKRHISTV
GDLVETDTPLLDRMKEVAVKLLKCDASQTQLSFHIPPWNSVGKCCFRVTG
GP
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mRNA from alignment at Ecto-sp13_S_contig19238:283..615-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19238.6156.1 ID=mRNA_Ecto-sp13_S_contig19238.6156.1|Name=mRNA_Ecto-sp13_S_contig19238.6156.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19238:283..615- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGTCGTGTGGAACGCGGGAGGAGAGATGCAGAGCTGCTTGTTCTGCGA CTTCGCGAACCACACCAAGGAGAAGGAGCTCCTGTACGAAGACGACCTCG TGATCGCGTTCAGCCCGGTGAAGCCGGCAGCTAAGCAACACATTCTTGTG GTCCCCAAGAGACACATCTCGACCGTTGGGGATTTGGTCGAGACCGACAC ACCACTGCTGGACAGGATGAAGGAGGTCGCGGTGAAGCTGCTCAAGTGCG ACGCATCGCAAACTCAGCTCAGCTTCCACATACCCCCGTGGAATAGCGTT GGTAAGTGTTGCTTTCGCGTGACGGGCGGGCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19238:283..615-

>mRNA_Ecto-sp13_S_contig19238.6156.1 ID=mRNA_Ecto-sp13_S_contig19238.6156.1|Name=mRNA_Ecto-sp13_S_contig19238.6156.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=306bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19238:283..615- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGAGCTGCTTGTTCTGCGACTTCGCGAACCACACCAAGGAGAAGGA
GCTCCTGTACGAAGACGACCTCGTGATCGCGTTCAGCCCGGTGAAGCCGG
CAGCTAAGCAACACATTCTTGTGGTCCCCAAGAGACACATCTCGACCGTT
GGGGATTTGGTCGAGACCGACACACCACTGCTGGACAGGATGAAGGAGGT
CGCGGTGAAGCTGCTCAAGTGCGACGCATCGCAAACTCAGCTCAGCTTCC
ACATACCCCCGTGGAATAGCGTTGGTAAGTGTTGCTTTCGCGTGACGGGC
GGGCCC
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