prot_Ecto-sp13_S_contig19236.6154.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig19236.6154.1
Unique Nameprot_Ecto-sp13_S_contig19236.6154.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length192
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19236.6154.1 vs. uniprot
Match: A0A6H5K2G0_9PHAE (RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2G0_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 3.920e-32
Identity = 78/93 (83.87%), Postives = 81/93 (87.10%), Query Frame = 0 
Query:    5 PVSDVAGVRKATSTTADKVPAPAPTPSRTAWESVRFSRPSGSSSGGGDFCSASVVSRHASLAAAVADTATMDADKPSPSGGTVPEARSREVKS 97
            P SDVA VR+  STTA K PAPAPTPSRTAWESVRFSRPSGSSSGGG  CSASVVSRHASLAAAVA+TATMDAD  SPSGGTVP+ARS  VKS
Sbjct:  323 PASDVANVREVASTTAVKAPAPAPTPSRTAWESVRFSRPSGSSSGGGGRCSASVVSRHASLAAAVAETATMDADNYSPSGGTVPDARSGGVKS 415
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19236.6154.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K2G0_9PHAE3.920e-3283.87RNA polymerase II subunit B1 CTD phosphatase RPAP2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19236contigEcto-sp13_S_contig19236:2051..2626 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19236.6154.1mRNA_Ecto-sp13_S_contig19236.6154.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig19236 2051..2627 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig19236.6154.1 ID=prot_Ecto-sp13_S_contig19236.6154.1|Name=mRNA_Ecto-sp13_S_contig19236.6154.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=192bp
SPAPPVSDVAGVRKATSTTADKVPAPAPTPSRTAWESVRFSRPSGSSSGG
GDFCSASVVSRHASLAAAVADTATMDADKPSPSGGTVPEARSREVKSSSF
SSSATNTPGESAKPRTADSSQSPSPTRHRRVSFAEGTKESPQPNASSPPV
PSARGRAAAAKQARAAAVAAGTGPGRRGGRGRGSGKAPSGRG
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