mRNA_Ecto-sp13_S_contig19221.6147.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig19221.6147.1
Unique Name	mRNA_Ecto-sp13_S_contig19221.6147.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig19221.6147.1 vs. uniprot
Match: A0A6H5KSA7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSA7_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 7.770e-57
Identity = 85/119 (71.43%), Postives = 105/119 (88.24%), Query Frame = 1

Query:    1 AAQLDTRDVLGWWRRS-RQMFPFLAPVAQQVFGNQAGAAQVERDFSKCADLLTRHRSRVDTYWVEMIMFLHANFKHIPDFKEIPVIESKNIRKALPARFTGVDAELAAAEAVFDMVQNT 354
            A +LDTR++L WWR++ R+ FP+LAPVAQQVFGNQAGAAQVERDFS CA+LLTR+RSR+DTYWVEM+MFLHANF+HIP FK+IP+I +K+I   LP RF G DA+LAAAEA FD+++NT
Sbjct:   22 AEELDTREILPWWRQTGRKTFPYLAPVAQQVFGNQAGAAQVERDFSGCANLLTRNRSRMDTYWVEMVMFLHANFEHIPGFKDIPMIAAKDIHTCLPPRFNGGDADLAAAEAAFDVIKNT 140

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BLAST of mRNA_Ecto-sp13_S_contig19221.6147.1 vs. uniprot
Match: A0A6H5JVT2_9PHAE (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT2_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 2.880e-56
Identity = 87/126 (69.05%), Postives = 109/126 (86.51%), Query Frame = 1

Query:    1 AAQLDTRDVLGWWRRS-RQMFPFLAPVAQQVFGNQAGAAQVERDFSKCADLLTRHRSRVDTYWVEMIMFLHANFKHIPDFKEIPVIESKNIRKALPARFTGVDAELAAAEAVFDMVQNTS-TDLGL 372
            A +LDTR+VL WWR + R+MFP+LAPVAQQV GNQAGAAQVERDFS CA+LLTR+RSR+DTYWVEM+MFLH N+K IP FK+IP+I +K+IR  LP RF G DA+LAAAEA FD+++NT+ +D+G+
Sbjct:   97 AEELDTREVLPWWRNTGRKMFPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIRTCLPPRFNGGDADLAAAEAAFDVIENTNNSDIGV 222

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BLAST of mRNA_Ecto-sp13_S_contig19221.6147.1 vs. uniprot
Match: A0A6H5KZ46_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ46_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 1.230e-51
Identity = 87/126 (69.05%), Postives = 108/126 (85.71%), Query Frame = 1

Query:    1 AAQLDTRDVLGWWRRS-RQMFPFLAPVAQQVFGNQAGAAQVERDFSKCADLLTRHRSRVDTYWVEMIMFLHANFKHIPDFKEIPVIESKNIRKALPARFTGVDAELAAAEAVFDMVQNTS-TDLGL 372
            A +LDTR+VL WWR + R+MFP LAPVAQQV GNQAGAAQVERDFS CA+LLTR+RSR+DTYWVEM+MFLH N+K IP FK+IP+I +K+IR  LP RF G DA+LAAAEA FD+++NT+ +D+G+
Sbjct:  495 AEELDTREVLPWWRNTGRKMFPCLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIRTCLPPRFNGGDADLAAAEATFDVIENTNNSDIGV 620

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BLAST of mRNA_Ecto-sp13_S_contig19221.6147.1 vs. uniprot
Match: A0A6H5KP16_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP16_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 2.110e-48
Identity = 75/107 (70.09%), Postives = 93/107 (86.92%), Query Frame = 1

Query:   55 MFPFLAPVAQQVFGNQAGAAQVERDFSKCADLLTRHRSRVDTYWVEMIMFLHANFKHIPDFKEIPVIESKNIRKALPARFTGVDAELAAAEAVFDMVQN-TSTDLGL 372
            MFP+LAPVAQQV GNQAGAAQVERDFS CA+LLTR+RSR+DTYWVEM+MFLH N+K IP FK+IP+I +K+IR  LP RF G DA+LAAAEA FD+++N  ++D+G+
Sbjct:    1 MFPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIRTCLPPRFNGGDADLAAAEAAFDVIENINNSDIGV 107

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BLAST of mRNA_Ecto-sp13_S_contig19221.6147.1 vs. uniprot
Match: A0A6H5JZQ5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ5_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 4.650e-45
Identity = 75/120 (62.50%), Postives = 96/120 (80.00%), Query Frame = 1

Query:    1 AAQLDTRDVLGWWRRS-RQMFPFLAPVAQQVFGNQAGAAQVERDFSKCADLLTRHRSRVDTYWVEMIMFLHANFKHIPDFKEIPVIESKNIRKALPARFTGVDAELAAAEAVFDMVQNTS 357
            A +LD R+VL WW+R+ + +FP LAPVAQQVFGNQA  +QVERDFS    LL  +RSR+DTYWVE++MFL+ANF HIP  K+IP++ +KNIR  LPARF G DA+L AAEA+FD++ NT+
Sbjct:  184 ADELDCREVLPWWKRTGKNIFPHLAPVAQQVFGNQAAVSQVERDFSGVGILLAPNRSRMDTYWVEIVMFLNANFAHIPPLKQIPMVAAKNIRSCLPARFHGRDADLMAAEAIFDVLMNTA 303

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BLAST of mRNA_Ecto-sp13_S_contig19221.6147.1 vs. uniprot
Match: A0A6H5JB56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB56_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 9.220e-41
Identity = 74/78 (94.87%), Postives = 76/78 (97.44%), Query Frame = 1

Query:  109 AAQVERDFSKCADLLTRHRSRVDTYWVEMIMFLHANFKHIPDFKEIPVIESKNIRKALPARFTGVDAELAAAEAVFDM 342
            A +VERDFSKCADLLTRHRSRVDTYWVEMIMFLHANFKH+PDFKEIPVIESKNIRKALPARFTGVDAELAAAEA FDM
Sbjct: 1198 AEEVERDFSKCADLLTRHRSRVDTYWVEMIMFLHANFKHVPDFKEIPVIESKNIRKALPARFTGVDAELAAAEAAFDM 1275

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BLAST of mRNA_Ecto-sp13_S_contig19221.6147.1 vs. uniprot
Match: A0A6H5KBM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM2_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 4.110e-39
Identity = 72/123 (58.54%), Postives = 96/123 (78.05%), Query Frame = 1

Query:   13 DTRDVLGWWRRSRQM--FPFLAPVAQQVFGNQAGAAQVERDFSKCADLLTRHRSRVDTYWVEMIMFLHANFKHIPDFKEIPVIESKNIRKALPARFTGVDAELAAAEAVFDMVQNTS-TDLGL 372
            D+ D +   + S+++  F  L   A +V GNQAGAAQVERDFS CA+LLTR+RSR+DTYWVEM+MFLH N+K IP FK+IP+I +K+IR  LP RF G DA+LAAAEA FD+++NT+ +D+G+
Sbjct:  201 DSEDKVLMQQVSQELERFQALYMTAGEVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKCIPAFKDIPMIAAKDIRTCLPPRFNGGDADLAAAEAAFDVIENTNNSDIGV 323

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BLAST of mRNA_Ecto-sp13_S_contig19221.6147.1 vs. uniprot
Match: A0A6H5JN28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN28_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 3.680e-33
Identity = 60/88 (68.18%), Postives = 74/88 (84.09%), Query Frame = 1

Query:  112 AQVERDFSKCADLLTRHRSRVDTYWVEMIMFLHANFKHIPDFKEIPVIESKNIRKALPARFTGVDAELAAAEAVFDMVQNTST-DLGL 372
            A VERDFS CA+LLTR+RSR+DTYWVEM+MFLHANF+HIP FK+IP+I +K+I   LP RF   DA+LAAAEA FD+++NT T D+GL
Sbjct:  133 AAVERDFSGCANLLTRNRSRMDTYWVEMVMFLHANFEHIPGFKDIPMIAAKDIHTCLPPRFNRGDADLAAAEAAFDVIENTETGDVGL 220

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BLAST of mRNA_Ecto-sp13_S_contig19221.6147.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 5.220e-30
Identity = 62/117 (52.99%), Postives = 79/117 (67.52%), Query Frame = 1

Query:   10 LDTRDVLGWWRRS-RQMFPFLAPVAQQVFGNQAGAAQVERDFSKCADLLTRHRSRVDTYWVEMIMFLHANFKHIPDFKEIPVIESKNIRKALPARFTGVDAELAAAEAVFDMVQNTS 357
            L   +VL +W  + R  FP L  VAQQ FG+Q  AA VERDFS C   L  +RSRV+ YWVEM+MFL+ANFK IP +  IP I+SK+IRK LPA+F G D +L +AE   D ++N +
Sbjct:  727 LHPTEVLSYWATTGRHSFPALKHVAQQTFGSQPSAAPVERDFSGCGLFLVPNRSRVEEYWVEMVMFLNANFKFIPKYDNIPSIDSKDIRKCLPAKFKGTDEDLLSAEMALDPLRNNT 843

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BLAST of mRNA_Ecto-sp13_S_contig19221.6147.1 vs. uniprot
Match: A0A6H5KFQ8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ8_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 2.600e-27
Identity = 59/118 (50.00%), Postives = 82/118 (69.49%), Query Frame = 1

Query:    1 AAQLDTRDVLGWWRRS-RQMFPFLAPVAQQVFGNQAGAAQVERDFSKCADLLTRHRSRVDTYWVEMIMFLHANFKHIPDFKEIPVIESKNIRKALPARFTGVDAELAAAEAVFDMVQN 351
            ++ L  RDVL +W++S R  FP L  VAQQ FG+QA AAQ+ERDFS    L   +R+R+D YWVEM++FL ANF+ IP + +IP ++SK+IR+ LPA+F G +  L  AE   D ++N
Sbjct:  379 SSDLQPRDVLNYWKQSGRHAFPALNYVAQQRFGSQAYAAQIERDFSTGGLLGASNRNRLDEYWVEMVLFLKANFQCIPGYDDIPNMDSKSIRECLPAKFKGTNEYLLDAEMALDPLEN 496

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig19221.6147.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig19221.6147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19


Match Name	E-value	Identity	Description
A0A6H5KSA7_9PHAE	7.770e-57	71.43	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]
A0A6H5JVT2_9PHAE	2.880e-56	69.05	Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ec...	[more]
A0A6H5KZ46_9PHAE	1.230e-51	69.05	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]
A0A6H5KP16_9PHAE	2.110e-48	70.09	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]
A0A6H5JZQ5_9PHAE	4.650e-45	62.50	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]
A0A6H5JB56_9PHAE	9.220e-41	94.87	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KBM2_9PHAE	4.110e-39	58.54	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JN28_9PHAE	3.680e-33	68.18	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JJJ9_9PHAE	5.220e-30	52.99	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]
A0A6H5KFQ8_9PHAE	2.600e-27	50.00	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig19221	contig	Ecto-sp13_S_contig19221:479..871 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	0
Model size	393
Hectar predicted targeting category	other localisation
Exons	1
Cds size	393

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462978.671391-CDS-Ecto-sp13_S_contig19221:478..871	1681462978.671391-CDS-Ecto-sp13_S_contig19221:478..871	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig19221 479..871 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig19221.6147.1	prot_Ecto-sp13_S_contig19221.6147.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig19221 479..871 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig19221:479..871-
coding sequence from alignment at Ecto-sp13_S_contig19221:479..871-

protein sequence of mRNA_Ecto-sp13_S_contig19221.6147.1

>prot_Ecto-sp13_S_contig19221.6147.1 ID=prot_Ecto-sp13_S_contig19221.6147.1|Name=mRNA_Ecto-sp13_S_contig19221.6147.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=131bp
AAQLDTRDVLGWWRRSRQMFPFLAPVAQQVFGNQAGAAQVERDFSKCADL
LTRHRSRVDTYWVEMIMFLHANFKHIPDFKEIPVIESKNIRKALPARFTG
VDAELAAAEAVFDMVQNTSTDLGLAEVEGS*

mRNA from alignment at Ecto-sp13_S_contig19221:479..871-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig19221.6147.1 ID=mRNA_Ecto-sp13_S_contig19221.6147.1|Name=mRNA_Ecto-sp13_S_contig19221.6147.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19221:479..871- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGCGCAGTTGGATACCCGAGACGTGCTGGGTTGGTGGCGACGAAGCAG
GCAGATGTTCCCATTTCTCGCACCAGTGGCGCAGCAAGTGTTTGGGAACC
AGGCGGGTGCCGCGCAGGTAGAGCGCGACTTCAGCAAATGCGCTGATCTC
CTCACACGCCACAGGAGCCGCGTGGACACCTACTGGGTAGAGATGATCAT
GTTCCTCCACGCCAACTTCAAGCACATCCCTGACTTCAAAGAAATTCCCG
TCATCGAAAGCAAGAACATTCGCAAGGCTCTCCCGGCACGGTTCACCGGG
GTGGATGCTGAGCTGGCAGCAGCTGAGGCTGTCTTTGACATGGTGCAAAA
CACTAGCACGGACCTCGGCCTCGCGGAAGTTGAAGGAAGTTGA

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19221:479..871-

>mRNA_Ecto-sp13_S_contig19221.6147.1 ID=mRNA_Ecto-sp13_S_contig19221.6147.1|Name=mRNA_Ecto-sp13_S_contig19221.6147.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19221:479..871- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGCGCAGTTGGATACCCGAGACGTGCTGGGTTGGTGGCGACGAAGCAG
GCAGATGTTCCCATTTCTCGCACCAGTGGCGCAGCAAGTGTTTGGGAACC
AGGCGGGTGCCGCGCAGGTAGAGCGCGACTTCAGCAAATGCGCTGATCTC
CTCACACGCCACAGGAGCCGCGTGGACACCTACTGGGTAGAGATGATCAT
GTTCCTCCACGCCAACTTCAAGCACATCCCTGACTTCAAAGAAATTCCCG
TCATCGAAAGCAAGAACATTCGCAAGGCTCTCCCGGCACGGTTCACCGGG
GTGGATGCTGAGCTGGCAGCAGCTGAGGCTGTCTTTGACATGGTGCAAAA
CACTAGCACGGACCTCGGCCTCGCGGAAGTTGAAGGAAGTTGA