mRNA_Ecto-sp13_S_contig1921.6142.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1921.6142.1
Unique NamemRNA_Ecto-sp13_S_contig1921.6142.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1921.6142.1 vs. uniprot
Match: A0A6H5JMA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA0_9PHAE)

HSP 1 Score: 707 bits (1825), Expect = 1.280e-230
Identity = 397/446 (89.01%), Postives = 411/446 (92.15%), Query Frame = 1 
Query:    4 AREAGRARGRAAAVAFFMSRAVAGRRLRAWLERRRRRLEATRAAEDHRAQAAVNPGAARWRRQRRRDQQLRMEAAWSSWRATTRRRKTSRSARRAVVEAIESRLRSGAIGAWRDFADGRLRRRGLLAEAAQERARRLKGKGLRGLKVGALDVRAPRDAVWVGDEHWRRRGVAIVVARLRNLAKSRRRMVRRAAALCLRVAARAGLTRWRHSARDSRVARDACAKGEAWRRKKSRRDGVSVLSGRLGRRAEQNRMIRVGTLHLSRRLAGRAVAAWREWTRRRAAGVDLCEGASALHRSWVLSAGLRALDRVARARTSRREAIIVAERHLLRFYGLGWWRAAAASRRRARNRAERATVHWARTLSSKVLISWEAAALQQWAETRQEEAAASHERLASKRRALRAWMARVRAGRRCLLCVRSRGVGVSFAEERAGREGGLFSSNGIYSR 1341
            AREAGRARG A AVAFFMSRAVAGRRLRAW+ERRRRRLEATRAAEDHRA+AAVNPGAARWRRQRRRDQQLRMEAAWSSWR TTR RK SRSARRAVVEA+ESRLRS AIGAWRDF DGRL RRGLLAEAAQ RARRLK KGLRG+K GALD RAPRDAVWVGDEHWRRR  AIVVARLRNLA+SRRRMVRRAAALCLRVAARAGLTRWR SARD RVAR+AC KGEAWRR K+RRDGVSVLSGRLGRRA+ +R IRV TLHLSRRLAGRAVA WR WTRRRAA  DL EGASALHRSW+LSAGLRALDRVARARTSRREAI+VAERHLLRFYGLG WRAAAASRRRAR+RAE ATVHWARTLSSKVLISWEAA+LQQWAETRQEEAAA HERLASKRRALRAWM RVR+ RRCLLCV SRGVGVS AEERAG EGGL SSNGIYSR
Sbjct: 2266 AREAGRARGCATAVAFFMSRAVAGRRLRAWVERRRRRLEATRAAEDHRARAAVNPGAARWRRQRRRDQQLRMEAAWSSWRETTRGRKMSRSARRAVVEAVESRLRSSAIGAWRDFVDGRLARRGLLAEAAQSRARRLKRKGLRGVKGGALDARAPRDAVWVGDEHWRRRRAAIVVARLRNLAESRRRMVRRAAALCLRVAARAGLTRWRQSARDWRVAREACVKGEAWRRDKARRDGVSVLSGRLGRRAKHDRAIRVSTLHLSRRLAGRAVAVWRGWTRRRAAAADLYEGASALHRSWILSAGLRALDRVARARTSRREAIVVAERHLLRFYGLGRWRAAAASRRRARSRAEIATVHWARTLSSKVLISWEAASLQQWAETRQEEAAARHERLASKRRALRAWMTRVRSRRRCLLCVGSRGVGVSLAEERAGSEGGLLSSNGIYSR 2711
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1921.6142.1 vs. uniprot
Match: D7G051_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G051_ECTSI)

HSP 1 Score: 644 bits (1662), Expect = 8.840e-230
Identity = 364/421 (86.46%), Postives = 381/421 (90.50%), Query Frame = 1 
Query:    1 VAREAGRARGRAAAVAFFMSRAVAGRRLRAWLERRRRRLEATRAAEDHRAQAAVNPGAARWRRQRRRDQQLRMEAAWSSWRATTRRRKTSRSARRAVVEAIESRLRSGAIGAWRDFADGRLRRRGLLAEAAQERARRLKGKGLRGLKVGALDVRAPRDAVWVGDEHWRRRGVAIVVARLRNLAKSRRRMVRRAAALCLRVAARAGLTRWRHSARDSRVARDACAKGEAWRRKKSRRDGVSVLSGRLGRRAEQNRMIRVGTLHLSRRLAGRAVAAWREWTRRRAAGVDLCEGASALHRSWVLSAGLRALDRVARARTSRREAIIVAERHLLRFYGLGWWRAAAASRRRARNRAERATVHWARTLSSKVLISWEAAALQQWAETRQEEAAASHERLASKRRALRAWMARVRAGRRCLLCVRSR 1263
            +AR+ GRARGRAAAVAFF+SRAVAGR LRAW+ERRRRRLEATRAAEDHRA+AAV+PGAARWRRQRRRDQQLRMEAAWSSWRATTR R+TSRSARRAVVEA+ESRLRSGAIGAWR FADGRLRRRGLLAEAAQ RARRLKGKGLRGLK GALD RAPRDAVWVGDEHWRRRG AIVVARLRNL +SRRRMVRRAAALCLRVAARAGLTRWR SARDSRVAR+AC KGEAWRR+K+RRDGVS+LSGRLG RAEQ                  AVAAWR WTRRRAA  DL EGASALHRSWVLSAG+RALDRVARARTSRREAI+VAERHLLRFYGLG WRAAAASRRRAR+RAE ATVHWARTLSSKVLISWEAAALQQWAETRQEEAAA HERLA KRRALRAWMARVR+  RCLLCVRSR
Sbjct:    1 MARDTGRARGRAAAVAFFLSRAVAGRWLRAWVERRRRRLEATRAAEDHRARAAVSPGAARWRRQRRRDQQLRMEAAWSSWRATTRGRRTSRSARRAVVEAVESRLRSGAIGAWRGFADGRLRRRGLLAEAAQSRARRLKGKGLRGLKGGALDARAPRDAVWVGDEHWRRRGAAIVVARLRNLTESRRRMVRRAAALCLRVAARAGLTRWRQSARDSRVAREACVKGEAWRREKARRDGVSMLSGRLGGRAEQKXXXXXXXXXXXXXXXXXAVAAWRGWTRRRAAAADLYEGASALHRSWVLSAGMRALDRVARARTSRREAIVVAERHLLRFYGLGRWRAAAASRRRARSRAEIATVHWARTLSSKVLISWEAAALQQWAETRQEEAAARHERLAGKRRALRAWMARVRSRPRCLLCVRSR 421
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1921.6142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JMA0_9PHAE1.280e-23089.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G051_ECTSI8.840e-23086.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1921contigEcto-sp13_S_contig1921:1068..3594 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1355
Hectar predicted targeting categorymitochondrion
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_007260.1
Cds size1290
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1921.6142.1prot_Ecto-sp13_S_contig1921.6142.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1921 1122..3583 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462978.1538002-UTR-Ecto-sp13_S_contig1921:1067..11211681462978.1538002-UTR-Ecto-sp13_S_contig1921:1067..1121Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1921 1068..1121 +
1681462978.2100794-UTR-Ecto-sp13_S_contig1921:3583..35941681462978.2100794-UTR-Ecto-sp13_S_contig1921:3583..3594Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1921 3584..3594 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462978.1631148-CDS-Ecto-sp13_S_contig1921:1121..16061681462978.1631148-CDS-Ecto-sp13_S_contig1921:1121..1606Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1921 1122..1606 +
1681462978.1751556-CDS-Ecto-sp13_S_contig1921:1885..21071681462978.1751556-CDS-Ecto-sp13_S_contig1921:1885..2107Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1921 1886..2107 +
1681462978.1835623-CDS-Ecto-sp13_S_contig1921:2393..25701681462978.1835623-CDS-Ecto-sp13_S_contig1921:2393..2570Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1921 2394..2570 +
1681462978.1920867-CDS-Ecto-sp13_S_contig1921:2797..29571681462978.1920867-CDS-Ecto-sp13_S_contig1921:2797..2957Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1921 2798..2957 +
1681462978.200756-CDS-Ecto-sp13_S_contig1921:3337..35831681462978.200756-CDS-Ecto-sp13_S_contig1921:3337..3583Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1921 3338..3583 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1921.6142.1

>prot_Ecto-sp13_S_contig1921.6142.1 ID=prot_Ecto-sp13_S_contig1921.6142.1|Name=mRNA_Ecto-sp13_S_contig1921.6142.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=430bp
MSRAVAGRRLRAWLERRRRRLEATRAAEDHRAQAAVNPGAARWRRQRRRD
QQLRMEAAWSSWRATTRRRKTSRSARRAVVEAIESRLRSGAIGAWRDFAD
GRLRRRGLLAEAAQERARRLKGKGLRGLKVGALDVRAPRDAVWVGDEHWR
RRGVAIVVARLRNLAKSRRRMVRRAAALCLRVAARAGLTRWRHSARDSRV
ARDACAKGEAWRRKKSRRDGVSVLSGRLGRRAEQNRMIRVGTLHLSRRLA
GRAVAAWREWTRRRAAGVDLCEGASALHRSWVLSAGLRALDRVARARTSR
REAIIVAERHLLRFYGLGWWRAAAASRRRARNRAERATVHWARTLSSKVL
ISWEAAALQQWAETRQEEAAASHERLASKRRALRAWMARVRAGRRCLLCV
RSRGVGVSFAEERAGREGGLFSSNGIYSR*
back to top

mRNA from alignment at Ecto-sp13_S_contig1921:1068..3594+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1921.6142.1 ID=mRNA_Ecto-sp13_S_contig1921.6142.1|Name=mRNA_Ecto-sp13_S_contig1921.6142.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2527bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1921:1068..3594+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGCCCGCGAGGCCGGTCGGGCGAGGGGGCGCGCCGCCGCCGTCGCGTT
CTTCATGTCCCGGGCGGTGGCGGGGAGGCGGCTCCGGGCTTGGTTGGAGC
GGCGACGGCGGCGATTAGAGGCCACGCGGGCGGCGGAAGACCACCGGGCC
CAGGCGGCTGTGAACCCGGGGGCGGCGCGGTGGCGGCGACAGCGGCGGCG
GGACCAGCAGCTGCGGATGGAGGCCGCCTGGAGCTCGTGGCGGGCAACGA
CGAGGAGGAGAAAGACTTCGCGATCGGCGCGGCGGGCTGTCGTTGAGGCT
ATCGAGAGCCGCCTGCGGAGCGGCGCGATCGGAGCGTGGCGAGACTTCGC
GGATGGCAGGCTCCGGCGGCGAGGCCTGCTGGCCGAAGCGGCGCAGGAAC
GGGCTCGGCGACTGAAGGGGAAAGGGTTGCGGGGCCTGAAGGTCGGCGCG
CTCGACGTGCGTGCTCCTCGAGATGCGGTTTGGGTTGGGGACGAGCACTG
GAGACGGCGAGGGGTGGCGATTGTTGTGGCGCGACTGCGGTGGGCAAAAA
GTGACAGCAGCGTGTTAGGAGAACAGTCCTCGATCGATGCTGATGTAGTA
GATCTGTCATTGATTGGTGTCGAGTTAACGGGTCTGACCTTGATTGCTGT
TTTAGTCGTTCCACGCGGGAGTACCATGAACTCGCGTCCCTTCTCTACGT
GCGCGCCCCCCCTTTACGTCCACCAAGTCTACCTTTTGTAATCTACACCC
GTTGATGATGACATTGAAAGAGTAACCTAGCGTCCCTCTGTGGCCGCCGC
GTACCCGGCACCTCGCAGAAATCTCGCCAAGTCACGACGGCGAATGGTTC
GGCGAGCCGCCGCTCTCTGCCTCCGCGTCGCTGCCCGAGCTGGCCTGACC
CGCTGGCGCCATTCCGCACGAGACTCGAGGGTGGCTCGGGATGCGTGCGC
CAAGGGAGAGGCCTGGCGGCGGAAAAAATCGAGGAGAGACGGGGTGTCGG
TGCTGTCTGGTAGATTGGGCCGGCGCGCTGAACAGAATCGGTGAGAAAGC
ATGCCGTCGCGTGGCATGGTTGTTGCCCAGTGCGATTATGGTCTGTGCAA
CGAGGGTCCTTATCCTACCGCGCTGAGTGACGTGGTCTTCTCCGCCCGAT
AATCTCCATAGTGACGCATCCGGCTTGATTGCGTCCGCCTTGCGCAAACC
ATGACCAGCAATAATTTTTCATCCTTTCTGTGCCATAAGCTTCAAGCGGT
CTTGAACCCCCCCCGCCCCCCGCCTCGGCCAGGAAAGTCGCACCCATTAT
TTCCCGTGTTCCTTGCCCGGACACAGAATGATTCGAGTCGGCACACTGCA
CCTCTCACGCCGACTAGCCGGCCGGGCGGTGGCTGCGTGGCGAGAGTGGA
CCCGGCGTCGAGCCGCGGGAGTCGATCTCTGCGAAGGGGCTTCGGCGTTG
CATCGTTCCTGGGTCTTGTCGGCGGGGTTGCGGGCCCTAGACCGGGTGGC
GAGGTGCGACGCCTGTTTATTTCCGCACCAATTCCCCTCGGTGTCCACCG
CGGCCCCCGCTCCCACCCGCAGTGCATGCAGGATTGCCGTTGCTGCTCTT
GTTAACCATCAAAGCGTCGCCGGTTCCACAAAGAAAGGCGGTGGGCTGGT
CTTCTGAGGTTAAGATAATAATCATGATCACTTCCCACGATGGTAAGAAT
CGACAGCAATAAATACCGGCTTCCTTGCAGGGCGAGAACGTCGCGGCGCG
AGGCCATCATCGTCGCCGAGCGACACCTCTTGCGGTTCTACGGGCTGGGG
TGGTGGCGCGCTGCGGCCGCATCGAGGAGGCGTGCGCGCAACCGGGCGGA
GAGAGCCACGGTCCACTGGGCGCGGACACTTTCCTCGAAGGTTAGCTACT
CAAGCTCCGCATCGCATGTATTTGACAGCAGTCACGATTCCACTTGTTTG
GGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGACCCATGTTTTTCAT
CGCCAGGACTAATGCCGAAAATTAAACGTGACTACAGGGAAGATGTCGTC
TAGAGCTTTCCTTGCGTGTTCCGCTCGGATTTCGCACCCTACTGGTTGTG
CAGTGATCGACCTCTGATAAGTCAGCCTGGGGTATGAGCGGTGACTCCCA
GTTTTGAGCCAGTTGCTCATCGCCCACGTGTGGAGTTTTCAATTATTTCT
TTAATGCCGCGATTTGTGTTCCGGTTGACACTGACCCCCCTTTGTCACTA
CTTCATGTGTCTCGGCAAAGGTCTTGATTTCCTGGGAAGCGGCTGCGCTG
CAGCAGTGGGCCGAGACGAGGCAGGAGGAGGCCGCCGCCAGCCACGAGCG
TCTCGCCAGCAAGAGACGGGCGCTTCGGGCTTGGATGGCGCGCGTTCGGG
CGGGGCGGCGGTGCTTGCTGTGCGTTAGGTCGAGGGGGGTCGGGGTATCA
TTCGCGGAGGAGAGAGCGGGGAGGGAAGGGGGGCTCTTTTCGTCGAATGG
TATTTATTCTCGTTGACACGATTTAGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1921:1068..3594+

>mRNA_Ecto-sp13_S_contig1921.6142.1 ID=mRNA_Ecto-sp13_S_contig1921.6142.1|Name=mRNA_Ecto-sp13_S_contig1921.6142.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1290bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1921:1068..3594+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCCGGGCGGTGGCGGGGAGGCGGCTCCGGGCTTGGTTGGAGCGGCG
ACGGCGGCGATTAGAGGCCACGCGGGCGGCGGAAGACCACCGGGCCCAGG
CGGCTGTGAACCCGGGGGCGGCGCGGTGGCGGCGACAGCGGCGGCGGGAC
CAGCAGCTGCGGATGGAGGCCGCCTGGAGCTCGTGGCGGGCAACGACGAG
GAGGAGAAAGACTTCGCGATCGGCGCGGCGGGCTGTCGTTGAGGCTATCG
AGAGCCGCCTGCGGAGCGGCGCGATCGGAGCGTGGCGAGACTTCGCGGAT
GGCAGGCTCCGGCGGCGAGGCCTGCTGGCCGAAGCGGCGCAGGAACGGGC
TCGGCGACTGAAGGGGAAAGGGTTGCGGGGCCTGAAGGTCGGCGCGCTCG
ACGTGCGTGCTCCTCGAGATGCGGTTTGGGTTGGGGACGAGCACTGGAGA
CGGCGAGGGGTGGCGATTGTTGTGGCGCGACTGCGAAATCTCGCCAAGTC
ACGACGGCGAATGGTTCGGCGAGCCGCCGCTCTCTGCCTCCGCGTCGCTG
CCCGAGCTGGCCTGACCCGCTGGCGCCATTCCGCACGAGACTCGAGGGTG
GCTCGGGATGCGTGCGCCAAGGGAGAGGCCTGGCGGCGGAAAAAATCGAG
GAGAGACGGGGTGTCGGTGCTGTCTGGTAGATTGGGCCGGCGCGCTGAAC
AGAATCGAATGATTCGAGTCGGCACACTGCACCTCTCACGCCGACTAGCC
GGCCGGGCGGTGGCTGCGTGGCGAGAGTGGACCCGGCGTCGAGCCGCGGG
AGTCGATCTCTGCGAAGGGGCTTCGGCGTTGCATCGTTCCTGGGTCTTGT
CGGCGGGGTTGCGGGCCCTAGACCGGGTGGCGAGGGCGAGAACGTCGCGG
CGCGAGGCCATCATCGTCGCCGAGCGACACCTCTTGCGGTTCTACGGGCT
GGGGTGGTGGCGCGCTGCGGCCGCATCGAGGAGGCGTGCGCGCAACCGGG
CGGAGAGAGCCACGGTCCACTGGGCGCGGACACTTTCCTCGAAGGTCTTG
ATTTCCTGGGAAGCGGCTGCGCTGCAGCAGTGGGCCGAGACGAGGCAGGA
GGAGGCCGCCGCCAGCCACGAGCGTCTCGCCAGCAAGAGACGGGCGCTTC
GGGCTTGGATGGCGCGCGTTCGGGCGGGGCGGCGGTGCTTGCTGTGCGTT
AGGTCGAGGGGGGTCGGGGTATCATTCGCGGAGGAGAGAGCGGGGAGGGA
AGGGGGGCTCTTTTCGTCGAATGGTATTTATTCTCGTTGA
back to top