mRNA_Ecto-sp13_S_contig19207.6140.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19207.6140.1
Unique NamemRNA_Ecto-sp13_S_contig19207.6140.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19207.6140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19207contigEcto-sp13_S_contig19207:419..2586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size497
Hectar predicted targeting categoryother localisation
Exons3
Cds size477
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462977.9569213-CDS-Ecto-sp13_S_contig19207:418..7091681462977.9569213-CDS-Ecto-sp13_S_contig19207:418..709Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19207 419..709 -
1681462977.967299-CDS-Ecto-sp13_S_contig19207:1980..21201681462977.967299-CDS-Ecto-sp13_S_contig19207:1980..2120Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19207 1981..2120 -
1681462977.9772766-CDS-Ecto-sp13_S_contig19207:2521..25671681462977.9772766-CDS-Ecto-sp13_S_contig19207:2521..2567Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19207 2522..2567 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462977.9869628-UTR-Ecto-sp13_S_contig19207:2567..25861681462977.9869628-UTR-Ecto-sp13_S_contig19207:2567..2586Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19207 2568..2586 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19207.6140.1prot_Ecto-sp13_S_contig19207.6140.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19207 419..2567 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19207.6140.1

>prot_Ecto-sp13_S_contig19207.6140.1 ID=prot_Ecto-sp13_S_contig19207.6140.1|Name=mRNA_Ecto-sp13_S_contig19207.6140.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=159bp
MGVVRDPEHGNTWVCDYRYNFLNRHSFRAGKMADVPKTSDLMSDLLQEFA
DDMAKQGLDHNLRPGMVRATGSSKSRKKTKAGARFPLVEDIFDEPDGGLD
DGRRTIIQPDEMSFSSDDDSDDDGGLVLTTKGSATGGVTKKAAKGGAEAG
RLPRGAAAG
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mRNA from alignment at Ecto-sp13_S_contig19207:419..2586-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19207.6140.1 ID=mRNA_Ecto-sp13_S_contig19207.6140.1|Name=mRNA_Ecto-sp13_S_contig19207.6140.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19207:419..2586- (Ectocarpus species13 EcNAP12_S_4_19m)
CGACCAGCCCCTGCACCGAATGGGTGTCGTGCGGGACCCGGAGCACGGCA
ACACGTGGGTCTGTGGTGAGTAGTCCAAACGGTTTCGTACGACAACGTGC
CGTCCGAAGGCGCAACCGGCATATTTTCGGCGTATCTCATCGCCGAACAC
GGTTATTCTATTATTCTGGTTGATTTGCCTCGCCGTCAACCCAAAAAAAG
GGTGCCCTCCCTATGACCTTATTCAAAGAGCGTCGGTGCACTACACCAAG
ACTACGGTAGGTTCCTCCCGTTTTTGTACATGTCGTCCTGTGGACCAATC
TCAAGCAGGCCAAACATGTTTGCAATCCCGATTCGGGGCCCGGTATCGTA
GCCCTGACCTCCGACGTCACTCACAAAACACGCAACCGACATATATACAA
TATATCATGACCAGATAACGTCGTTTCAATCATGCCCCAACCCCGCTCGA
CCCGTCCCCTCGCAAGACTACCGGTACAACTTTCTGAACCGGCATAGCTT
CAGGGCTGGTAAAATGGCTGACGTCCCGAAGACAAGCGACCTCATGAGCG
ACCTTCTCCAGGAGTTCGCAGACGACATGGCCAAGCAGGGCCTCGACCAC
AATTTGGTAAGTCGGTAAAACACTGGTGTGGCTCTTCTTTTAACAATTAC
GGGCGAAGGCAAGAATACACACGTACGCAGTTTGTTCGCGTGCATTGGGA
CGGGTGGGTGCTACAGTTGGCAGGCGGTAGAGGTGTCCGGCCGCTCGTGT
GGATGGAGTCTGACTTGAGGCACAGGACGGATGTCATGTGTGTATTACTT
CGTTTCTTCCCGATAATCCCAAATCTCGGTAAGCTTACCCCACAACCGTT
CGCTGGTGGGTGTTTTTATACCGTCGGTGTAGGCCACCAAGGTGAAACTG
TCTTCACTGTTGGCCAACACATCTATTTCATCATTTTTTCACATGATGAA
ATTATGTCGGCGGCACATATTGTATCTGATTATCCGCACGAATGGTGGCC
TCTCTCGCCCGTAAACTAAAAGTATGCTGCTGATGACGCCAGCATAACAG
CAGCAGCAGCTCAAACGATTTGGTCGGTTCGTTGCTCAACCCTTCATCTC
TCGCTGGGGCCCCTCATGCTATCGTGGTGGGGTGGCTCACGACTTACGTT
TGGCACGCCACAGCATCTCAAGTATGTTTCGCCGAGCAATCAACTACGCG
GTCCGCATGACATTTTTTGACCTCTGTGTACCGTGCTACAGCTTGCTGCT
GCGACGCATAATACACTTACTCAGTCCGTGAGTGCATGATGTACGATGAA
CCAAGCGAGTATGTAGACGCCGGGCGCACTTCTGGCGGTGTGACGGTTGA
GGTCTCTTGAGCGAGGCGGCGAAAGCCGCCAGCACTACCACCACTCTTCG
TTAACCAATTCCACATCATTTTGATCTTCGTGATATACTAGTACCATTAC
TACCGCTGTATGGCATGAACCGAGTACGTCCCCTTCCTGCACCGATCCGC
ATTTATTGTCGTTTTGAATACTTTGGGTGTACTGGCACGAATTAACGTTG
AGTACCACTTATCGCGTATCTTGGAATCGATCTGTTGGGCGGGGCGGGGC
GGGGCAAGCCGCCAGACCCCTTGTAAAGAAATACGAACCGTGTTCCCGTA
AGTACCCGAACGGAATTGCTCCACTCACTACGGGGTGGGACCTTCGTCTG
CCAACGGCAAAACACATTCTGCTCACAGGCCCGAAATCGGCACCACTGCT
GAGGCGCAGTTGCGTTCGTGCCTGTTGTAACCTGTACCTGTCACCAACGT
CTGGCACCGATTCCCGGGGCGATCCCATATGCCCTAACGCCCGTTGTCAC
GCATGCCGCCCGTCGACCTCTTTGCAGCGCCCTGGGATGGTCCGTGCCAC
TGGAAGCAGCAAATCTCGGAAGAAGACGAAGGCAGGCGCCAGATTTCCTC
TGGTCGAAGACATCTTTGACGAGCCTGATGGCGGCCTGGACGACGGGCGA
CGCACCATCATTCAACCCGACGAGATGAGCTTCTCGAGTGACGACGACTC
CGACGACGACGGAGGCCTCGTGTTGACCACCAAGGGATCGGCCACGGGTG
GCGTTACCAAGAAGGCCGCCAAGGGCGGGGCCGAAGCCGGGCGTCTACCG
CGCGGCGCGGCAGCGGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19207:419..2586-

>mRNA_Ecto-sp13_S_contig19207.6140.1 ID=mRNA_Ecto-sp13_S_contig19207.6140.1|Name=mRNA_Ecto-sp13_S_contig19207.6140.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=477bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19207:419..2586- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTGTCGTGCGGGACCCGGAGCACGGCAACACGTGGGTCTGTGACTA
CCGGTACAACTTTCTGAACCGGCATAGCTTCAGGGCTGGTAAAATGGCTG
ACGTCCCGAAGACAAGCGACCTCATGAGCGACCTTCTCCAGGAGTTCGCA
GACGACATGGCCAAGCAGGGCCTCGACCACAATTTGCGCCCTGGGATGGT
CCGTGCCACTGGAAGCAGCAAATCTCGGAAGAAGACGAAGGCAGGCGCCA
GATTTCCTCTGGTCGAAGACATCTTTGACGAGCCTGATGGCGGCCTGGAC
GACGGGCGACGCACCATCATTCAACCCGACGAGATGAGCTTCTCGAGTGA
CGACGACTCCGACGACGACGGAGGCCTCGTGTTGACCACCAAGGGATCGG
CCACGGGTGGCGTTACCAAGAAGGCCGCCAAGGGCGGGGCCGAAGCCGGG
CGTCTACCGCGCGGCGCGGCAGCGGGT
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