mRNA_Ecto-sp13_S_contig19205.6138.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig19205.6138.1 vs. uniprot
Match: A0A6H5KSQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSQ9_9PHAE) HSP 1 Score: 115 bits (289), Expect = 1.440e-29 Identity = 59/61 (96.72%), Postives = 60/61 (98.36%), Query Frame = 1
Query: 1 SESPVEEFAIRGRRVLVKRDDKMRLAESGLSGNKARKLYALNKTPAASFPEVVASHGGPQA 183
SESPVEEF IRGRRVLVKRDDKMRLAESGLSGNKARKLYALNKTPA+SFPEVVASHGGPQA
Sbjct: 30 SESPVEEFVIRGRRVLVKRDDKMRLAESGLSGNKARKLYALNKTPASSFPEVVASHGGPQA 90
BLAST of mRNA_Ecto-sp13_S_contig19205.6138.1 vs. uniprot
Match: D7G221_ECTSI (Similar to 1-Aminocyclopropane-1-Carboxylate Deaminase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G221_ECTSI) HSP 1 Score: 96.7 bits (239), Expect = 1.430e-22 Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 1
Query: 1 SESPVEEFAIRGRRVLVKRDDKMRLAESGLSGNKARKLYALNKTPAASFPE 153
SESPVEEF IRGRRVLVKRDDKMRLAESGLSGNKARKLYALNKTPA+SFPE
Sbjct: 187 SESPVEEFVIRGRRVLVKRDDKMRLAESGLSGNKARKLYALNKTPASSFPE 237
BLAST of mRNA_Ecto-sp13_S_contig19205.6138.1 vs. uniprot
Match: A0A835YPC9_9STRA (Tryptophan synthase beta subunit-like PLP-dependent enzyme n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPC9_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 1.220e-17 Identity = 41/60 (68.33%), Postives = 47/60 (78.33%), Query Frame = 1
Query: 1 SESPVEEFAIRGRRVLVKRDDKMRLAESGLSGNKARKLYALNKTPAASFPEVVASHGGPQ 180
++SPV+ F IRGR VLVKRDDKMRL SG+SGNKARKLY N TPA P++V SHGG Q
Sbjct: 3 TQSPVDTFTIRGRTVLVKRDDKMRLKGSGISGNKARKLYTFNATPADQLPDLVVSHGGAQ 62
BLAST of mRNA_Ecto-sp13_S_contig19205.6138.1 vs. uniprot
Match: A0A448Z2S8_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z2S8_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 8.390e-14 Identity = 37/60 (61.67%), Postives = 45/60 (75.00%), Query Frame = 1
Query: 1 SESPVEEFAIRGRRVLVKRDDKMRLAESGLSGNKARKLYALNKTPAASFPEVVASHGGPQ 180
S SPVE IRGR V VK DD++RLA SG+SGNKARK++ LN+ PA FP + S+GGPQ
Sbjct: 45 SPSPVEIRTIRGRTVHVKHDDQLRLAGSGISGNKARKMWTLNEIPAEEFPSCLVSYGGPQ 104
BLAST of mRNA_Ecto-sp13_S_contig19205.6138.1 vs. uniprot
Match: A0A7S2DJY8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DJY8_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 9.340e-13 Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = 1
Query: 7 SPVEEFAIRGRRVLVKRDDKMRLAESGLSGNKARKLYALNKTPAASFPEVVASHGGPQ 180
S VE +RGRR+ VKRDDK RL E+GL GNKARKLY+LN + FP+ + SHGGPQ
Sbjct: 58 SRVEAVEVRGRRIFVKRDDKYRLPETGLCGNKARKLYSLNNL--SPFPQDLVSHGGPQ 113
BLAST of mRNA_Ecto-sp13_S_contig19205.6138.1 vs. uniprot
Match: A0A7S1TP75_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TP75_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 7.290e-10 Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 1
Query: 4 ESPVEEFAIRGRRVLVKRDDKMRLAESGLSGNKARKLYALNKTPAASFPEVVASHGGPQ 180
++ V+E IRG VLVKRDD++RL +SG+ GNK RKL+ LN FP +AS GGPQ
Sbjct: 113 DTDVDEVMIRGAPVLVKRDDQLRLLDSGVFGNKGRKLWWLNSRTEQQFPASLASFGGPQ 171
BLAST of mRNA_Ecto-sp13_S_contig19205.6138.1 vs. uniprot
Match: A0A7S4CGT2_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CGT2_9EUGL) HSP 1 Score: 60.8 bits (146), Expect = 2.520e-9 Identity = 28/58 (48.28%), Postives = 41/58 (70.69%), Query Frame = 1
Query: 7 SPVEEFAIRGRRVLVKRDDKMRLAESGLSGNKARKLYALNKTPAASFPEVVASHGGPQ 180
S V+ F +RG ++ VKRDD++RL + LSGNKARK+YAL++ P ++ S+GG Q
Sbjct: 114 SGVDAFTVRGHKIFVKRDDQLRLPGTNLSGNKARKMYALHRWGPGQVPRMLVSYGGAQ 171
BLAST of mRNA_Ecto-sp13_S_contig19205.6138.1 vs. uniprot
Match: R1FIR6_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FIR6_EMIHU) HSP 1 Score: 53.5 bits (127), Expect = 9.420e-7 Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 1
Query: 7 SPVEEFAIRGRRVLVKRDDKMRLAESGLSGNKARKLYALNKTPAASFPEVVASHGGPQ 180
SP+E F++RG ++LVKRDD++ L SG+SGNKARKL AL P ++ S GG Q
Sbjct: 17 SPIEAFSLRGTQLLVKRDDRLALG-SGVSGNKARKLLALEAMSPG--PSLIGSFGGHQ 71
BLAST of mRNA_Ecto-sp13_S_contig19205.6138.1 vs. uniprot
Match: R1DYP1_EMIHU (Selenoprotein O n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DYP1_EMIHU) HSP 1 Score: 53.5 bits (127), Expect = 9.860e-7 Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 1
Query: 7 SPVEEFAIRGRRVLVKRDDKMRLAESGLSGNKARKLYALNKTPAASFPEVVASHGGPQ 180
SP+E F++RG ++LVKRDD++ L SG+SGNKARKL AL P ++ S GG Q
Sbjct: 17 SPIEAFSLRGTQLLVKRDDRLALG-SGVSGNKARKLLALEAMSPG--PSLIGSFGGHQ 71
BLAST of mRNA_Ecto-sp13_S_contig19205.6138.1 vs. uniprot
Match: A0A7S4E2R7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E2R7_9STRA) HSP 1 Score: 52.4 bits (124), Expect = 2.410e-6 Identity = 33/60 (55.00%), Postives = 39/60 (65.00%), Query Frame = 1
Query: 7 SPVEEFAIRGRRVLVKRDDKMRLAE--SGLSGNKARKLYALNKTPAASFPEVVASHGGPQ 180
SP++ F +RGR VLVKRDD+ L SG++GNKARKLY L K E VAS GG Q
Sbjct: 24 SPLQPFTVRGRSVLVKRDDRYALPGVLSGVAGNKARKLYGLYKRGFGDA-EAVASLGGHQ 82 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19205.6138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig19205.6138.1 >prot_Ecto-sp13_S_contig19205.6138.1 ID=prot_Ecto-sp13_S_contig19205.6138.1|Name=mRNA_Ecto-sp13_S_contig19205.6138.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=61bp SESPVEEFAIRGRRVLVKRDDKMRLAESGLSGNKARKLYALNKTPAASFPback to top mRNA from alignment at Ecto-sp13_S_contig19205:348..1275- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig19205.6138.1 ID=mRNA_Ecto-sp13_S_contig19205.6138.1|Name=mRNA_Ecto-sp13_S_contig19205.6138.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=928bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19205:348..1275- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19205:348..1275- >mRNA_Ecto-sp13_S_contig19205.6138.1 ID=mRNA_Ecto-sp13_S_contig19205.6138.1|Name=mRNA_Ecto-sp13_S_contig19205.6138.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19205:348..1275- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |