mRNA_Ecto-sp13_S_contig1920.6137.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1920.6137.1 vs. uniprot
Match: D7FUP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP6_ECTSI) HSP 1 Score: 181 bits (460), Expect = 1.670e-52 Identity = 149/237 (62.87%), Postives = 156/237 (65.82%), Query Frame = 1
Query: 1 KLLKRKKEEAKSAAVAARKETPAPPAALRKNDKNVKEMAPPGSKKPAATLNPSAAKSKKSLNKXXXXXXXXXXXXXXXGANLE--RTIRQVRILCRRARPISLDARKRGRVMTRLPRTGSSQGTRRKMMTSPLAISRTRAPSHMVTSKVTTHRAPAMAKLTKVMREWRATLYHLRNTRIESVNAAITTIQNDSKDGDGKLGKDTRG*PHADS-----QQVAPSACSSG-CLSRRHLL 687
KLLKRKK EAKSAAVA RKE PAP AAL KNDKN E APPG+KKPAATL+P AAKSKKSLN XXXXXXXXXXXXXX + RTIR VRILCRRAR SLDARKR RVMTRLPRTGS RKMM +APAMAKLTKVMREWRA L+ LR TRIE VNAAITTIQNDSKD DG + K G P + Q A C G C LL
Sbjct: 13 KLLKRKKGEAKSAAVAPRKEAPAPTAALHKNDKN--EKAPPGTKKPAATLDPPAAKSKKSLNXXXXXXXXXXXXXXXAASTWTHARTIRLVRILCRRARRTSLDARKRRRVMTRLPRTGS-----RKMMXXXXXXXXXXXXXXXXXXXXXXXKAPAMAKLTKVMREWRAALHRLRLTRIEGVNAAITTIQNDSKDRDGNVVKALVGNPMPTAKRWLFQLAAVDVCHDGTCCPETKLL 242
BLAST of mRNA_Ecto-sp13_S_contig1920.6137.1 vs. uniprot
Match: D7FHM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM3_ECTSI) HSP 1 Score: 123 bits (308), Expect = 1.490e-28 Identity = 61/78 (78.21%), Postives = 65/78 (83.33%), Query Frame = 2
Query: 590 NLVKTLVGNPMPTANRWLLQLAAVDVFHDDTCCPETKLLKDAIKTHPIDADATEEPVAGAKPKSAMREGGKTKRTRSK 823
N+VK LVGNPMPTA RWLLQLAAVDV HDDTCCPETKLLKDA+KTHPI A+ TE PVA KP SA +GGKTK RSK
Sbjct: 400 NVVKALVGNPMPTAKRWLLQLAAVDVCHDDTCCPETKLLKDAVKTHPIKAEDTETPVASGKPTSAKAKGGKTKPKRSK 477
BLAST of mRNA_Ecto-sp13_S_contig1920.6137.1 vs. uniprot
Match: A0A6H5JUG3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUG3_9PHAE) HSP 1 Score: 112 bits (280), Expect = 1.420e-24 Identity = 118/249 (47.39%), Postives = 132/249 (53.01%), Query Frame = 1
Query: 1 KLLKRKKEEAKSAAVAARKETPAPPAALRKNDKNVKEMAPPGSKKPAATLNPSAAKSKKSLNKXXXXXXXXXXXXXXXGANLERTIRQVRILCRRARPISLDARKRGRVMTRLPR-TGSSQGTRRKMMTSPLA-ISRTRAPSHMVTSKVTTHRA------------------------PAMAKLTKVMREWRATLYHLRNTRIESVNAAITTIQNDSKDGDGKLGKDTRG*PHADSQQVAPSACSSGCL 669
KLLKRKK +AKSAAVAARK APPG+KK AATL+PSAAKSK SLN XXXXXXXXXXXXXXX NL+ C+ + L A ++ + L + G G + + + RA H + A P KVMREWRA LY LRNTRIE VNAAITTIQNDSKDGDG TRG PHADSQQVAPSAC GCL
Sbjct: 231 KLLKRKKAKAKSAAVAARK-------------------APPGTKKAAATLDPSAAKSKTSLNXXXXXXXXXXXXXXXXXXNLDS--------CKNDQANRLTASEKSFLKKLLAKQNGVESGDLEEDDDESVDDLEDARAEPHGDLESYDSQGAGDGKADEDEDSPLDHFRDCLAAALPWKKASLKVMREWRAALYRLRNTRIEGVNAAITTIQNDSKDGDGN----TRGEPHADSQQVAPSACGRGCL 448
BLAST of mRNA_Ecto-sp13_S_contig1920.6137.1 vs. uniprot
Match: D7G6L1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6L1_ECTSI) HSP 1 Score: 105 bits (261), Expect = 4.730e-22 Identity = 70/102 (68.63%), Postives = 74/102 (72.55%), Query Frame = 3
Query: 240 EPGKNDQASKDPV*ASPSNKSGREEKRTRDDTTST-------------------NGVESGDSEEDD-DESVSDLEDARAEPHGDLESDDSQGTGDGKADEGD 485
+P KNDQASK PV ASPSNKSGREEK+TRDDTTST N VESGDSEE D DESV +LEDARAEPHGDLESDDSQG GDG ADEG+
Sbjct: 358 DPSKNDQASKGPVSASPSNKSGREEKKTRDDTTSTANRRTASGKSYVKKLLAKQNAVESGDSEEADADESVDELEDARAEPHGDLESDDSQGAGDGSADEGE 459
BLAST of mRNA_Ecto-sp13_S_contig1920.6137.1 vs. uniprot
Match: A0A6H5JAW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAW4_9PHAE) HSP 1 Score: 85.9 bits (211), Expect = 1.790e-17 Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = 2
Query: 635 RWLLQLAAVDVFHDDTCCPETKLLKDAIKTHPIDADATEEPVAGAKPKS 781
RWL Q AAVDV HDDTCCPE KLLKDA+KTHPI+AD TEEPVA A+PKS
Sbjct: 68 RWLRQRAAVDVCHDDTCCPEAKLLKDAVKTHPIEADDTEEPVASAEPKS 116
BLAST of mRNA_Ecto-sp13_S_contig1920.6137.1 vs. uniprot
Match: A0A6H5JHM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHM4_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 3.210e-15 Identity = 44/58 (75.86%), Postives = 48/58 (82.76%), Query Frame = 2
Query: 635 RWLLQLAAVDVFHDDTCCPETKLLKDAIKTHPIDADATEEPVAGAKPKSAMREGGKTK 808
RWLL LAAV+V HDDT PETKLLKDA+ HPI AD TE+PVA AKPKSA R+GGKTK
Sbjct: 124 RWLLLLAAVNVCHDDTWYPETKLLKDAVNMHPIVADDTEKPVASAKPKSAERKGGKTK 181
BLAST of mRNA_Ecto-sp13_S_contig1920.6137.1 vs. uniprot
Match: A0A6H5JEG3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEG3_9PHAE) HSP 1 Score: 73.2 bits (178), Expect = 3.210e-11 Identity = 56/88 (63.64%), Postives = 59/88 (67.05%), Query Frame = 1
Query: 1 KLLKRKKEEAKSAAVAARK-----ETPAPPAALRKNDKNVKEMAPPGSKKPAATLNPSAAKSKKSLNKXXXXXXXXXXXXXXXGANLE 249
KLLKRKK EAKSAAVAARK ETPA AALR NDKNVK AP G+KKPAATL+PSAAKSKK LNK ANL+
Sbjct: 247 KLLKRKKGEAKSAAVAARKARTTKETPALTAALRYNDKNVK--APFGTKKPAATLDPSAAKSKKRLNKALPGTKKSAERAAPAAANLD 332 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1920.6137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1920.6137.1 >prot_Ecto-sp13_S_contig1920.6137.1 ID=prot_Ecto-sp13_S_contig1920.6137.1|Name=mRNA_Ecto-sp13_S_contig1920.6137.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=87bp MIRRTGTANLVKTLVGNPMPTANRWLLQLAAVDVFHDDTCCPETKLLKDAback to top mRNA from alignment at Ecto-sp13_S_contig1920:10580..14649- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1920.6137.1 ID=mRNA_Ecto-sp13_S_contig1920.6137.1|Name=mRNA_Ecto-sp13_S_contig1920.6137.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4070bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1920:10580..14649- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1920:10580..14649- >mRNA_Ecto-sp13_S_contig1920.6137.1 ID=mRNA_Ecto-sp13_S_contig1920.6137.1|Name=mRNA_Ecto-sp13_S_contig1920.6137.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1920:10580..14649- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |