prot_Ecto-sp13_S_contig19198.6133.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig19198.6133.1
Unique Nameprot_Ecto-sp13_S_contig19198.6133.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length531
Homology
BLAST of mRNA_Ecto-sp13_S_contig19198.6133.1 vs. uniprot
Match: D8LQQ9_ECTSI (Hypothetical leucine rich repeat calcium binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQQ9_ECTSI)

HSP 1 Score: 634 bits (1636), Expect = 4.710e-206
Identity = 417/532 (78.38%), Postives = 432/532 (81.20%), Query Frame = 0
Query:    1 RGLCTNRALTSLDLAANELDEYAGQELAHSLVKNKTLTGIDLTGSNVPDEWLHAHTTQICSEVYDILPSLAESLRLNRARRTDLITTIGRRASPRTIHLERTRAKEARASERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNVLEKAXXXXXEEVGGFSRGADKEAR-VHEEKAGGSDEWREKASSRLSGEGEGLVSERENRREKESNVCEAPPISKSTTGRVPGAGIEGDSAQDANVTKPSAPATANEPTPVRGKRRRRDLGTGVHAEQPTAAATSGVSSPVSGGGKAGVGSSPPRRLRRQRERPMRPASPSALSTRGKGAGEGRGHRRKSGGAXXXXXXXXXXXXAKSTTAATAVNTAXXTGVDAAEEEAMEGATGSDGVRRVPGVWTRRGVWAPANKLAEDRARVEERRVGDRQRQLREAEAVQEAGSAKREELLEYLSTPDGEALVARVAAVLVHAQREEDRATKRERKEELKALTLQRQRTALMTRRRHSDGFGGLLALTATRTLPSWLTGRTGNTKSLR 531
            +GLCTNRALTSLDLAANELDEYAGQELAH                NVPDEWL  H  +ICSEVYDILPSLAESLRLNRARRTDLITTIGRRASPRTIHLERTRAKEARASERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       XXXXX      S G DKEAR VHEEKAGGSDEWREK S  LSGEGEGLVS R+NRREKESN CEAPPIS +T GRVPGAG EGDS ++A  TKPS P TA+EPTPVRGKRRRRD GTGVHAEQ TA ATSGVSSPVSGGGKA V SSPPRRLRRQRERP RPASPSALSTRG+GAGEGRGH RKSGGA                                AEEEAMEGA GSDG+RRVPGVWTRRGVWAPANKLAEDRARVE RR+GDRQRQLRE EAV EAG+AKREE+LEYLST DGEALVARVAAVLVHAQREEDRATKRERKEEL+ALTL R+R ALMT+RRHSDG GGLL LTATRTLPSWL G TGN KSLR
Sbjct:  872 QGLCTNRALTSLDLAANELDEYAGQELAHXXXXXXXXXXXXXXXXNVPDEWLREHH-KICSEVYDILPSLAESLRLNRARRTDLITTIGRRASPRTIHLERTRAKEARASERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSGGTDKEARRVHEEKAGGSDEWREKPSGGLSGEGEGLVSGRKNRREKESNACEAPPISANTAGRVPGAGTEGDSVEEAMKTKPSVPTTADEPTPVRGKRRRRDQGTGVHAEQSTAVATSGVSSPVSGGGKARVDSSPPRRLRRQRERPTRPASPSALSTRGRGAGEGRGHDRKSGGAT-------------------------------AEEEAMEGAAGSDGIRRVPGVWTRRGVWAPANKLAEDRARVEGRRIGDRQRQLREDEAVHEAGAAKREEVLEYLSTTDGEALVARVAAVLVHAQREEDRATKRERKEELQALTLHRKRKALMTKRRHSDGPGGLLTLTATRTLPSWLAGWTGNAKSLR 1371          
BLAST of mRNA_Ecto-sp13_S_contig19198.6133.1 vs. uniprot
Match: A0A6H5KN13_9PHAE (AMPK1_CBM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN13_9PHAE)

HSP 1 Score: 392 bits (1008), Expect = 7.150e-123
Identity = 309/429 (72.03%), Postives = 326/429 (75.99%), Query Frame = 0
Query:    3 LCTNRALTSLDLAANELDEYAGQELAHSLVKNKTLTGIDLTGSNVPDEWLHAHTTQICSEVYDILPSLAESLRLNRARRTDLITTIGRRASPRTIHLERTRAKEARASERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNVLEKAXXXXXEEVGGFSRGADKEAR-VHEEKAGGSDEWREKASSRLSGEGEGLVSERENRREKESNVCEAPPISKSTTGRVPGAGIEGDSAQDANVTKPSAPATANEPTPVRGKRRRRDLGTGVHAEQPTAAATSGVSSPVSGGGKAGVGSSPPRRLRRQRERPMRPASPSALSTRGKGAGEGRGHRRKSGGAXXXXXXXXXXXXAKSTTAATAVNTAXXTGVDAAEEEAMEGATGSDGVRRVPGVWTRRGVWAPANKLAEDRARVEERRVGDRQRQLREAE 430
            L  N A+ +LDLA N +     + L+  L KN +L  + L G  V    + +    +  EVYDILPSLAESLRLNR RRTDLITTIGRRASPRTIHLERTRAKEA ASERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       XXXX       S G DKEAR VHEEKAG SDEWREKASS LSGEG          +EKESNVCEAPPIS  T  RVPGAGI+GDSAQ A  TKPS P TA+EP+PVRGK +RRDLGT VHAEQPTA ATSGV SPVSGGGKAGV +SPPRRLRRQRERP +PA PSAL TRGKG              XXXXXXXXXXXX  STTAATAVNT   T VDAAEEEAMEGATGSDGVRRVPGVWTRRGVWAPANKLAEDRARVEERRVGD QRQLRE E
Sbjct:  530 LLRNGAIETLDLAYNPIGPEGLRRLSGFLWKNTSLETLGLRGCEVEPAGVKSGIYTLAHEVYDILPSLAESLRLNRTRRTDLITTIGRRASPRTIHLERTRAKEACASERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------VSGGTDKEARRVHEEKAGRSDEWREKASSGLSGEG----------KEKESNVCEAPPISNITARRVPGAGIKGDSAQGAMKTKPSVPTTADEPSPVRGKHQRRDLGTSVHAEQPTAVATSGVRSPVSGGGKAGVDNSPPRRLRRQRERPTQPALPSALWTRGKGEXXXXXXXXXXXXXXXXXXXXXXXXXXXSTTAATAVNTGAAT-VDAAEEEAMEGATGSDGVRRVPGVWTRRGVWAPANKLAEDRARVEERRVGDWQRQLREDE 941          
BLAST of mRNA_Ecto-sp13_S_contig19198.6133.1 vs. uniprot
Match: A0A6H5KGV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGV7_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 3.940e-13
Identity = 45/64 (70.31%), Postives = 54/64 (84.38%), Query Frame = 0
Query:  468 REEDRATKRERKEELKALTLQRQRTALMTRRRHSDGFGGLLALTATRTLPSWLTGRTGNTKSLR 531
            ++EDRATKR+RKEEL+ALTL+R+RTAL  +RRH+DG GGL+ALTATR LP WLT  TGN K  R
Sbjct:    4 KDEDRATKRKRKEELQALTLRRKRTALTMKRRHNDGPGGLMALTATRKLPLWLTDWTGNAKPPR 67          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19198.6133.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LQQ9_ECTSI4.710e-20678.38Hypothetical leucine rich repeat calcium binding p... [more]
A0A6H5KN13_9PHAE7.150e-12372.03AMPK1_CBM domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KGV7_9PHAE3.940e-1370.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 99..119
NoneNo IPR availableCOILSCoilCoilcoord: 137..160
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 3..52
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..152
e-value: 6.9E-7
score: 30.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19198contigEcto-sp13_S_contig19198:3..3194 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19198.6133.1mRNA_Ecto-sp13_S_contig19198.6133.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig19198 2..3194 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig19198.6133.1 ID=prot_Ecto-sp13_S_contig19198.6133.1|Name=mRNA_Ecto-sp13_S_contig19198.6133.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=531bp
RGLCTNRALTSLDLAANELDEYAGQELAHSLVKNKTLTGIDLTGSNVPDE
WLHAHTTQICSEVYDILPSLAESLRLNRARRTDLITTIGRRASPRTIHLE
RTRAKEARASERRRRLEKRRRRQKAVERASSRRRHRRQQQQQQQQQGRNV
LEKAEEQEQEEVGGFSRGADKEARVHEEKAGGSDEWREKASSRLSGEGEG
LVSERENRREKESNVCEAPPISKSTTGRVPGAGIEGDSAQDANVTKPSAP
ATANEPTPVRGKRRRRDLGTGVHAEQPTAAATSGVSSPVSGGGKAGVGSS
PPRRLRRQRERPMRPASPSALSTRGKGAGEGRGHRRKSGGAAGEEKGSER
KPGAKSTTAATAVNTAAATGVDAAEEEAMEGATGSDGVRRVPGVWTRRGV
WAPANKLAEDRARVEERRVGDRQRQLREAEAVQEAGSAKREELLEYLSTP
DGEALVARVAAVLVHAQREEDRATKRERKEELKALTLQRQRTALMTRRRH
SDGFGGLLALTATRTLPSWLTGRTGNTKSLR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf