mRNA_Ecto-sp13_S_contig19198.6133.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig19198.6133.1 vs. uniprot
Match: D8LQQ9_ECTSI (Hypothetical leucine rich repeat calcium binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQQ9_ECTSI) HSP 1 Score: 634 bits (1636), Expect = 4.710e-206 Identity = 417/532 (78.38%), Postives = 432/532 (81.20%), Query Frame = 1
Query: 1 RGLCTNRALTSLDLAANELDEYAGQELAHSLVKNKTLTGIDLTGSNVPDEWLHAHTTQICSEVYDILPSLAESLRLNRARRTDLITTIGRRASPRTIHLERTRAKEARASERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNVLEKAXXXXXEEVGGFSRGADKEAR-VHEEKAGGSDEWREKASSRLSGEGEGLVSERENRREKESNVCEAPPISKSTTGRVPGAGIEGDSAQDANVTKPSAPATANEPTPVRGKRRRRDLGTGVHAEQPTAAATSGVSSPVSGGGKAGVGSSPPRRLRRQRERPMRPASPSALSTRGKGAGEGRGHRRKSGGAXXXXXXXXXXXXAKSTTAATAVNTAXXTGVDAAEEEAMEGATGSDGVRRVPGVWTRRGVWAPANKLAEDRARVEERRVGDRQRQLREAEAVQEAGSAKREELLEYLSTPDGEALVARVAAVLVHAQREEDRATKRERKEELKALTLQRQRTALMTRRRHSDGFGGLLALTATRTLPSWLTGRTGNTKSLR 1593
+GLCTNRALTSLDLAANELDEYAGQELAH NVPDEWL H +ICSEVYDILPSLAESLRLNRARRTDLITTIGRRASPRTIHLERTRAKEARASERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXX S G DKEAR VHEEKAGGSDEWREK S LSGEGEGLVS R+NRREKESN CEAPPIS +T GRVPGAG EGDS ++A TKPS P TA+EPTPVRGKRRRRD GTGVHAEQ TA ATSGVSSPVSGGGKA V SSPPRRLRRQRERP RPASPSALSTRG+GAGEGRGH RKSGGA AEEEAMEGA GSDG+RRVPGVWTRRGVWAPANKLAEDRARVE RR+GDRQRQLRE EAV EAG+AKREE+LEYLST DGEALVARVAAVLVHAQREEDRATKRERKEEL+ALTL R+R ALMT+RRHSDG GGLL LTATRTLPSWL G TGN KSLR
Sbjct: 872 QGLCTNRALTSLDLAANELDEYAGQELAHXXXXXXXXXXXXXXXXNVPDEWLREHH-KICSEVYDILPSLAESLRLNRARRTDLITTIGRRASPRTIHLERTRAKEARASERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSGGTDKEARRVHEEKAGGSDEWREKPSGGLSGEGEGLVSGRKNRREKESNACEAPPISANTAGRVPGAGTEGDSVEEAMKTKPSVPTTADEPTPVRGKRRRRDQGTGVHAEQSTAVATSGVSSPVSGGGKARVDSSPPRRLRRQRERPTRPASPSALSTRGRGAGEGRGHDRKSGGAT-------------------------------AEEEAMEGAAGSDGIRRVPGVWTRRGVWAPANKLAEDRARVEGRRIGDRQRQLREDEAVHEAGAAKREEVLEYLSTTDGEALVARVAAVLVHAQREEDRATKRERKEELQALTLHRKRKALMTKRRHSDGPGGLLTLTATRTLPSWLAGWTGNAKSLR 1371
BLAST of mRNA_Ecto-sp13_S_contig19198.6133.1 vs. uniprot
Match: A0A6H5KN13_9PHAE (AMPK1_CBM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN13_9PHAE) HSP 1 Score: 392 bits (1008), Expect = 7.150e-123 Identity = 309/429 (72.03%), Postives = 326/429 (75.99%), Query Frame = 1
Query: 7 LCTNRALTSLDLAANELDEYAGQELAHSLVKNKTLTGIDLTGSNVPDEWLHAHTTQICSEVYDILPSLAESLRLNRARRTDLITTIGRRASPRTIHLERTRAKEARASERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNVLEKAXXXXXEEVGGFSRGADKEAR-VHEEKAGGSDEWREKASSRLSGEGEGLVSERENRREKESNVCEAPPISKSTTGRVPGAGIEGDSAQDANVTKPSAPATANEPTPVRGKRRRRDLGTGVHAEQPTAAATSGVSSPVSGGGKAGVGSSPPRRLRRQRERPMRPASPSALSTRGKGAGEGRGHRRKSGGAXXXXXXXXXXXXAKSTTAATAVNTAXXTGVDAAEEEAMEGATGSDGVRRVPGVWTRRGVWAPANKLAEDRARVEERRVGDRQRQLREAE 1290
L N A+ +LDLA N + + L+ L KN +L + L G V + + + EVYDILPSLAESLRLNR RRTDLITTIGRRASPRTIHLERTRAKEA ASERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXX S G DKEAR VHEEKAG SDEWREKASS LSGEG +EKESNVCEAPPIS T RVPGAGI+GDSAQ A TKPS P TA+EP+PVRGK +RRDLGT VHAEQPTA ATSGV SPVSGGGKAGV +SPPRRLRRQRERP +PA PSAL TRGKG XXXXXXXXXXXX STTAATAVNT T VDAAEEEAMEGATGSDGVRRVPGVWTRRGVWAPANKLAEDRARVEERRVGD QRQLRE E
Sbjct: 530 LLRNGAIETLDLAYNPIGPEGLRRLSGFLWKNTSLETLGLRGCEVEPAGVKSGIYTLAHEVYDILPSLAESLRLNRTRRTDLITTIGRRASPRTIHLERTRAKEACASERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------VSGGTDKEARRVHEEKAGRSDEWREKASSGLSGEG----------KEKESNVCEAPPISNITARRVPGAGIKGDSAQGAMKTKPSVPTTADEPSPVRGKHQRRDLGTSVHAEQPTAVATSGVRSPVSGGGKAGVDNSPPRRLRRQRERPTQPALPSALWTRGKGEXXXXXXXXXXXXXXXXXXXXXXXXXXXSTTAATAVNTGAAT-VDAAEEEAMEGATGSDGVRRVPGVWTRRGVWAPANKLAEDRARVEERRVGDWQRQLREDE 941
BLAST of mRNA_Ecto-sp13_S_contig19198.6133.1 vs. uniprot
Match: A0A6H5KGV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGV7_9PHAE) HSP 1 Score: 82.0 bits (201), Expect = 3.940e-13 Identity = 45/64 (70.31%), Postives = 54/64 (84.38%), Query Frame = 1
Query: 1402 REEDRATKRERKEELKALTLQRQRTALMTRRRHSDGFGGLLALTATRTLPSWLTGRTGNTKSLR 1593
++EDRATKR+RKEEL+ALTL+R+RTAL +RRH+DG GGL+ALTATR LP WLT TGN K R
Sbjct: 4 KDEDRATKRKRKEELQALTLRRKRTALTMKRRHNDGPGGLMALTATRKLPLWLTDWTGNAKPPR 67 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19198.6133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig19198.6133.1 >prot_Ecto-sp13_S_contig19198.6133.1 ID=prot_Ecto-sp13_S_contig19198.6133.1|Name=mRNA_Ecto-sp13_S_contig19198.6133.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=531bp RGLCTNRALTSLDLAANELDEYAGQELAHSLVKNKTLTGIDLTGSNVPDEback to top mRNA from alignment at Ecto-sp13_S_contig19198:2..3194- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig19198.6133.1 ID=mRNA_Ecto-sp13_S_contig19198.6133.1|Name=mRNA_Ecto-sp13_S_contig19198.6133.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3193bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19198:2..3194- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19198:2..3194- >mRNA_Ecto-sp13_S_contig19198.6133.1 ID=mRNA_Ecto-sp13_S_contig19198.6133.1|Name=mRNA_Ecto-sp13_S_contig19198.6133.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1593bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19198:2..3194- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |