mRNA_Ecto-sp13_S_contig19179.6125.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19179.6125.1
Unique NamemRNA_Ecto-sp13_S_contig19179.6125.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19179.6125.1 vs. uniprot
Match: A0A835ZJK2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJK2_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 2.250e-10
Identity = 27/50 (54.00%), Postives = 40/50 (80.00%), Query Frame = 2 
Query:    5 YHVGAVSMMFLVFVSTFSMVIMASTITCRCWVDSDPEKQAMLMVLTGSPY 154
            Y     SM+F+VF+STF+  +MA TI C+CW+D+DPEKQA++MV++ SP+
Sbjct:  344 YRYAGASMIFVVFISTFAQAMMACTIGCKCWLDADPEKQALMMVVSSSPH 393
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19179.6125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZJK2_9STRA2.250e-1054.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19179contigEcto-sp13_S_contig19179:1388..2756 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size286
Hectar predicted targeting categoryother localisation
Exons2
Cds size285
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462976.7199597-CDS-Ecto-sp13_S_contig19179:1388..15071681462976.7199597-CDS-Ecto-sp13_S_contig19179:1388..1507Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19179 1389..1507 -
1681462976.7288454-CDS-Ecto-sp13_S_contig19179:2590..27561681462976.7288454-CDS-Ecto-sp13_S_contig19179:2590..2756Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19179 2591..2756 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19179.6125.1prot_Ecto-sp13_S_contig19179.6125.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19179 1389..2756 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19179.6125.1

>prot_Ecto-sp13_S_contig19179.6125.1 ID=prot_Ecto-sp13_S_contig19179.6125.1|Name=mRNA_Ecto-sp13_S_contig19179.6125.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=95bp
KLPCGSGVDDVPGVRIDIFYGDHGQHDNLPLLGGLGPREAGNAHGSNRLP
LRFSEGSTGIPKVFPEKYRPISPTIWRYEWWEARKRRHPDKEAFA
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mRNA from alignment at Ecto-sp13_S_contig19179:1388..2756-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19179.6125.1 ID=mRNA_Ecto-sp13_S_contig19179.6125.1|Name=mRNA_Ecto-sp13_S_contig19179.6125.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1369bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19179:1388..2756- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGCTACCATGTGGGAGCGGTGTCGATGATGTTCCTGGTGTTCGTATCGA
CATTTTCTATGGTGATCATGGCCAGCACGATAACCTGCCGCTGCTGGGTG
GACTCGGACCCCGAGAAGCAGGCAATGCTCATGGTTCTAACCGGCTCCCC
CTACGTTTCTCCGAAGGTGAGTACACGTCGTGAGGGGGAGATCCCCGAGA
GGAAGGCAGGTTGTCACACATTGAGTCATGGGGAAGAACGAAATGGTACT
CAAAGAGGATGATACCGGTATATGTGTGGTGAAGAAATAGGGTTGACGAA
GAGGGGGTGGCGGTCACGAGGGGGTGTTTCTGGCGCTTGCGCGAGGGCAA
TCGGGCAAGGGGGGGTGTACTCGTAGTCATGCATGCCGTAGTAGTTCGAC
CGTTGACATCTCATCCCTACAAAGCCAGGACGAAGCACGCCAGGTTATCA
CCGGGCCAGGCTCTCACATCACCAAGCGCGAAGCACCGTGAGGTATTTGG
CAAGTCGCGTGGAGGGCGCGCTGCATCCTTCTAACGGTGCTCGGCATCTT
GAGCGAAGTTGGGCGGGGGATGCTAAAACCATATTTTTGATGATGAGTCG
TTTCCGAGAGGGTTGATGATAAAGGGTGAGAGATTGTCATTTCCTTACGA
TTGACCCTGACAGTGTTGGAGGCAATCCCGATTCTCCGATTTCCGACGCG
TCAAGTTATGCACTTGGGCAGGAACGGCTGAGCAAATCATGACCATCAAT
ACCGATCGATACTCGAGCGGGATGTGAGGGCGTTGAAACCCTCGGACCCG
GCAGAACTAGGCCAAATCAGTCTTACTTCTGTCGTGTCACACGGCGGAAT
GAAAATCAATCCTCCAGAGAAAGAATTCGTTGCATTCGTCTGCACTCCCT
CTCATCCGTCCTGACTTGAGCTCATGAGCGTTGTAGTGACCAATCCAAGT
GATGATACGGTCGGGGCATCAGCCTTTGTTTAACGCGATGGATTCCTGTG
TCGCCCATTCGTTTTGGCTTTTCAGCTGTTTCTGTTCATCTTTGTTTCCT
TCCAAGTCAACCTCTCGTCGAACTTACTGTACACGACCCCCGAAGTGCAA
AATCCTCTGACACGCGTATTTCCGTGTTTCGTCCCCTTTTCAATGGACCG
CGAAAGATGGACCGCGTCATTGCATCAAGAGTGATTATCTCATCGATCCC
CCTTTTGACGTGAGCCTTGACGTTTTGCGTGGAACCCTCGCTTCTACAGG
GTCAACCGGAATCCCCAAAGTTTTCCCCGAGAAATACCGTCCTATCAGCC
CTACGATTTGGAGATACGAGTGGTGGGAAGCCCGCAAACGGCGGCACCCC
GACAAGGAAGCCTTTGCAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19179:1388..2756-

>mRNA_Ecto-sp13_S_contig19179.6125.1 ID=mRNA_Ecto-sp13_S_contig19179.6125.1|Name=mRNA_Ecto-sp13_S_contig19179.6125.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=285bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19179:1388..2756- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGCTACCATGTGGGAGCGGTGTCGATGATGTTCCTGGTGTTCGTATCGA
CATTTTCTATGGTGATCATGGCCAGCACGATAACCTGCCGCTGCTGGGTG
GACTCGGACCCCGAGAAGCAGGCAATGCTCATGGTTCTAACCGGCTCCCC
CTACGTTTCTCCGAAGGGTCAACCGGAATCCCCAAAGTTTTCCCCGAGAA
ATACCGTCCTATCAGCCCTACGATTTGGAGATACGAGTGGTGGGAAGCCC
GCAAACGGCGGCACCCCGACAAGGAAGCCTTTGCA
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