mRNA_Ecto-sp13_S_contig19163.6116.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19163.6116.1
Unique NamemRNA_Ecto-sp13_S_contig19163.6116.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig19163.6116.1 vs. uniprot
Match: A0A6H5K4R3_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R3_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 6.680e-41
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1
Query:   16 RQAEESDRACWKCGEVDHRSDGDLIILCDGADCSGASHVGCCDPPLQGVPDGDWFCSECVATGRAP 213
            RQAEESDRACWKCGEVDHRSDGDLIILCDGADCSGASHVGCCDPPLQGVPDGDWFCSECVATGRAP
Sbjct:  535 RQAEESDRACWKCGEVDHRSDGDLIILCDGADCSGASHVGCCDPPLQGVPDGDWFCSECVATGRAP 600          
BLAST of mRNA_Ecto-sp13_S_contig19163.6116.1 vs. uniprot
Match: A0A1Y1IJK0_KLENI (PHD-type domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IJK0_KLENI)

HSP 1 Score: 69.7 bits (169), Expect = 3.020e-12
Identity = 28/54 (51.85%), Postives = 36/54 (66.67%), Query Frame = 1
Query:   34 DRACWKCGEVDHRSDGDLIILCDGADCSGASHVGCCDPPLQGVPDGDWFCSECV 195
            D+AC  CG  D     D ++LCDG  C GA H+ C DPPL  VP+GDWFC++C+
Sbjct: 1866 DQACGVCGSTDGE---DAMLLCDGGGCQGALHMYCADPPLAEVPEGDWFCADCL 1916          
BLAST of mRNA_Ecto-sp13_S_contig19163.6116.1 vs. uniprot
Match: A0A812TNR4_9DINO (Baz2a protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812TNR4_9DINO)

HSP 1 Score: 66.6 bits (161), Expect = 2.100e-11
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 1
Query:   43 CWKCGEVDHRSDGDLIILCDGA--DCSGASHVGCCDPPLQGVPDGDWFCSECVATGR 207
            C  CG  DH    + ++LCDG    C G +H+GCC+PPL+ VP+GDWFC+ C    R
Sbjct:  164 CSVCGRSDHP---ETLLLCDGGLPGCEGTTHLGCCNPPLKAVPEGDWFCASCQKQRR 217          
BLAST of mRNA_Ecto-sp13_S_contig19163.6116.1 vs. uniprot
Match: A0A7S4SVR0_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4SVR0_9DINO)

HSP 1 Score: 67.0 bits (162), Expect = 2.630e-11
Identity = 29/52 (55.77%), Postives = 34/52 (65.38%), Query Frame = 1
Query:   43 CWKCGEVDHRSDGDLIILCDGADCSGASHVGCCDPPLQGVPDGDWFCSECVA 198
            C  CG     SD   ++LCDG  CS A H+GCCDPPLQ VP G+WFC+ C A
Sbjct:  637 CMVCGGS---SDEAELLLCDGPGCSRACHLGCCDPPLQRVPAGEWFCARCQA 685          
BLAST of mRNA_Ecto-sp13_S_contig19163.6116.1 vs. uniprot
Match: A0A2E4J537_9BACT (PHD-type domain-containing protein n=1 Tax=Opitutaceae bacterium TaxID=2006848 RepID=A0A2E4J537_9BACT)

HSP 1 Score: 64.3 bits (155), Expect = 3.970e-11
Identity = 29/55 (52.73%), Postives = 34/55 (61.82%), Query Frame = 1
Query:   34 DRACWKCGEVDHRSDGDLIILCDGADCSGASHVGCCDPPLQGVPDGDWFCSECVA 198
            D AC  CG  D     D+++LCD   C  A H  C DPPL  VPDGDW+CS+CVA
Sbjct:    8 DIACQVCGLADR---SDIMLLCDN--CDRAFHTACVDPPLADVPDGDWYCSDCVA 57          
BLAST of mRNA_Ecto-sp13_S_contig19163.6116.1 vs. uniprot
Match: A0A6H5JJY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJY6_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 2.390e-10
Identity = 28/56 (50.00%), Postives = 37/56 (66.07%), Query Frame = 1
Query:   43 CWKCGEVDHRSDGDLIILCDGADCSGASHVGCCDPPLQGVPDGDWFCSECVATGRA 210
            C+ C + D +   DLI+LCDG  C G  H  C DPPL+ +PD +WFC+ C ATG+A
Sbjct:  116 CFVCKKNDKQ---DLILLCDG--CEGEYHTFCVDPPLRKIPDDEWFCAHCKATGKA 166          
BLAST of mRNA_Ecto-sp13_S_contig19163.6116.1 vs. uniprot
Match: A0A7S2CHR1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CHR1_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 5.580e-10
Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 1
Query:   37 RACWKCG--EVDHRSDGDLIILCDGADCSGASHVGCCDPPLQGVPDGDWFCSEC 192
            + C+KCG  +   + D  LI+LCD  +C    HV C DPPL+ +P+GDWFCS+C
Sbjct:   82 KVCFKCGCQKCGGKHDHSLILLCD--ECDDEYHVYCVDPPLERIPEGDWFCSKC 133          
BLAST of mRNA_Ecto-sp13_S_contig19163.6116.1 vs. uniprot
Match: A0A7S3JWR0_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JWR0_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 6.000e-10
Identity = 27/70 (38.57%), Postives = 38/70 (54.29%), Query Frame = 1
Query:    1 AAQRERQAEESDRACWKCGEVDHRSDGDLIILCDGADCSGASHVGCCDPPLQGVPDGDWFCSECVATGRA 210
            +A+ E +    D  C  CG  D     D ++LCDG +C   +H+ C +PPL  +P GDWFC+ C A   A
Sbjct:  766 SAKSETRKPSDDTICSICGSGDL---ADTLLLCDGPNCKNGTHMACLNPPLDEIPQGDWFCASCTAAASA 832          
BLAST of mRNA_Ecto-sp13_S_contig19163.6116.1 vs. uniprot
Match: A0A5N6QQE6_9ROSI (Uncharacterized protein n=1 Tax=Carpinus fangiana TaxID=176857 RepID=A0A5N6QQE6_9ROSI)

HSP 1 Score: 63.2 bits (152), Expect = 6.050e-10
Identity = 25/59 (42.37%), Postives = 37/59 (62.71%), Query Frame = 1
Query:   31 SDRACWKCGEVDHRSDGDLIILCD----GADCSGASHVGCCDPPLQGVPDGDWFCSECV 195
            +D AC  CG  D    G+++++C        C   +H+ CCDPPLQGVP+ DWFC++C+
Sbjct: 1165 NDIACQVCGSCDR---GEVMLICGDESGSVGCGVGTHIDCCDPPLQGVPEDDWFCAKCI 1220          
BLAST of mRNA_Ecto-sp13_S_contig19163.6116.1 vs. uniprot
Match: A0A0A0K5S5_CUCSA (PHD-type domain-containing protein n=1 Tax=Cucumis sativus TaxID=3659 RepID=A0A0A0K5S5_CUCSA)

HSP 1 Score: 60.5 bits (145), Expect = 7.800e-10
Identity = 24/60 (40.00%), Postives = 37/60 (61.67%), Query Frame = 1
Query:   28 ESDRACWKCGEVDHRSDGDLIILCDGAD----CSGASHVGCCDPPLQGVPDGDWFCSECV 195
            ++D AC +CG  D    G+++++C   D    C    H  CC+PPL  +P+GDWFCS+C+
Sbjct:   73 DNDIACQECGSRDR---GEVMLICGNEDGSSGCGIGMHTDCCNPPLLDIPEGDWFCSDCI 129          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19163.6116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K4R3_9PHAE6.680e-41100.00PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A1Y1IJK0_KLENI3.020e-1251.85PHD-type domain-containing protein n=1 Tax=Klebsor... [more]
A0A812TNR4_9DINO2.100e-1147.37Baz2a protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A7S4SVR0_9DINO2.630e-1155.77Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A2E4J537_9BACT3.970e-1152.73PHD-type domain-containing protein n=1 Tax=Opituta... [more]
A0A6H5JJY6_9PHAE2.390e-1050.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2CHR1_9STRA5.580e-1048.15Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S3JWR0_9STRA6.000e-1038.57Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
A0A5N6QQE6_9ROSI6.050e-1042.37Uncharacterized protein n=1 Tax=Carpinus fangiana ... [more]
A0A0A0K5S5_CUCSA7.800e-1040.00PHD-type domain-containing protein n=1 Tax=Cucumis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19163contigEcto-sp13_S_contig19163:1115..1464 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score66.6
Seed ortholog evalue5.2e-09
Seed eggNOG ortholog65071.PYU1_T007744
Model size216
KEGG rclassRC00011,RC00982
KEGG koko:K00432,ko:K11643,ko:K17586
KEGG ReactionR00274,R07034,R07035
KEGG Pathwayko00480,ko00590,ko04918,ko05165,ko05203,map00480,map00590,map04918,map05165,map05203
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Source PGD
EggNOG OGs1MFG1@121069,KOG0825@1,KOG0825@2759
EC1.11.1.9,3.6.4.12
Cds size213
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462976.0660226-CDS-Ecto-sp13_S_contig19163:1116..11551681462976.0660226-CDS-Ecto-sp13_S_contig19163:1116..1155Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19163 1117..1155 -
1681462976.0795379-CDS-Ecto-sp13_S_contig19163:1290..14641681462976.0795379-CDS-Ecto-sp13_S_contig19163:1290..1464Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19163 1291..1464 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19163.6116.1prot_Ecto-sp13_S_contig19163.6116.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19163 1117..1464 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19163.6116.1

>prot_Ecto-sp13_S_contig19163.6116.1 ID=prot_Ecto-sp13_S_contig19163.6116.1|Name=mRNA_Ecto-sp13_S_contig19163.6116.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=71bp
AAQRERQAEESDRACWKCGEVDHRSDGDLIILCDGADCSGASHVGCCDPP
LQGVPDGDWFCSECVATGRAP
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mRNA from alignment at Ecto-sp13_S_contig19163:1115..1464-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19163.6116.1 ID=mRNA_Ecto-sp13_S_contig19163.6116.1|Name=mRNA_Ecto-sp13_S_contig19163.6116.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=350bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19163:1115..1464- (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGCACAGAGGGAGAGGCAAGCGGAGGAGAGCGACCGGGCGTGTTGGAA ATGTGGAGAGGTGGATCATCGCTCGGATGGAGACCTCATCATTTTGTGCG ATGGTGCCGATTGCTCGGGCGCCAGCCATGTTGGGTGCTGCGACCCCCCT CTCCAGGGCGTTCCCGATGGAGATGTGAGTATTTAGAAGATCATGGTTTA CGTTTGTTTGTAGGACCCAAGAGGTAAGGTAACACGTGGGCGGATGAATT TGCCCGCTTTTGACAACCCTCTCTTTCTCTTTGCGCGCACACGTTTTGGC TGTTAACAGTGGTTCTGTAGCGAGTGTGTGGCGACCGGTCGGGCCCCGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19163:1115..1464-

>mRNA_Ecto-sp13_S_contig19163.6116.1 ID=mRNA_Ecto-sp13_S_contig19163.6116.1|Name=mRNA_Ecto-sp13_S_contig19163.6116.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=213bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19163:1115..1464- (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGCACAGAGGGAGAGGCAAGCGGAGGAGAGCGACCGGGCGTGTTGGAA
ATGTGGAGAGGTGGATCATCGCTCGGATGGAGACCTCATCATTTTGTGCG
ATGGTGCCGATTGCTCGGGCGCCAGCCATGTTGGGTGCTGCGACCCCCCT
CTCCAGGGCGTTCCCGATGGAGATTGGTTCTGTAGCGAGTGTGTGGCGAC
CGGTCGGGCCCCG
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