mRNA_Ecto-sp13_S_contig19163.6116.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig19163.6116.1 vs. uniprot
Match: A0A6H5K4R3_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R3_9PHAE) HSP 1 Score: 151 bits (381), Expect = 6.680e-41 Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1
Query: 16 RQAEESDRACWKCGEVDHRSDGDLIILCDGADCSGASHVGCCDPPLQGVPDGDWFCSECVATGRAP 213
RQAEESDRACWKCGEVDHRSDGDLIILCDGADCSGASHVGCCDPPLQGVPDGDWFCSECVATGRAP
Sbjct: 535 RQAEESDRACWKCGEVDHRSDGDLIILCDGADCSGASHVGCCDPPLQGVPDGDWFCSECVATGRAP 600
BLAST of mRNA_Ecto-sp13_S_contig19163.6116.1 vs. uniprot
Match: A0A1Y1IJK0_KLENI (PHD-type domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IJK0_KLENI) HSP 1 Score: 69.7 bits (169), Expect = 3.020e-12 Identity = 28/54 (51.85%), Postives = 36/54 (66.67%), Query Frame = 1
Query: 34 DRACWKCGEVDHRSDGDLIILCDGADCSGASHVGCCDPPLQGVPDGDWFCSECV 195
D+AC CG D D ++LCDG C GA H+ C DPPL VP+GDWFC++C+
Sbjct: 1866 DQACGVCGSTDGE---DAMLLCDGGGCQGALHMYCADPPLAEVPEGDWFCADCL 1916
BLAST of mRNA_Ecto-sp13_S_contig19163.6116.1 vs. uniprot
Match: A0A812TNR4_9DINO (Baz2a protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812TNR4_9DINO) HSP 1 Score: 66.6 bits (161), Expect = 2.100e-11 Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 1
Query: 43 CWKCGEVDHRSDGDLIILCDGA--DCSGASHVGCCDPPLQGVPDGDWFCSECVATGR 207
C CG DH + ++LCDG C G +H+GCC+PPL+ VP+GDWFC+ C R
Sbjct: 164 CSVCGRSDHP---ETLLLCDGGLPGCEGTTHLGCCNPPLKAVPEGDWFCASCQKQRR 217
BLAST of mRNA_Ecto-sp13_S_contig19163.6116.1 vs. uniprot
Match: A0A7S4SVR0_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4SVR0_9DINO) HSP 1 Score: 67.0 bits (162), Expect = 2.630e-11 Identity = 29/52 (55.77%), Postives = 34/52 (65.38%), Query Frame = 1
Query: 43 CWKCGEVDHRSDGDLIILCDGADCSGASHVGCCDPPLQGVPDGDWFCSECVA 198
C CG SD ++LCDG CS A H+GCCDPPLQ VP G+WFC+ C A
Sbjct: 637 CMVCGGS---SDEAELLLCDGPGCSRACHLGCCDPPLQRVPAGEWFCARCQA 685
BLAST of mRNA_Ecto-sp13_S_contig19163.6116.1 vs. uniprot
Match: A0A2E4J537_9BACT (PHD-type domain-containing protein n=1 Tax=Opitutaceae bacterium TaxID=2006848 RepID=A0A2E4J537_9BACT) HSP 1 Score: 64.3 bits (155), Expect = 3.970e-11 Identity = 29/55 (52.73%), Postives = 34/55 (61.82%), Query Frame = 1
Query: 34 DRACWKCGEVDHRSDGDLIILCDGADCSGASHVGCCDPPLQGVPDGDWFCSECVA 198
D AC CG D D+++LCD C A H C DPPL VPDGDW+CS+CVA
Sbjct: 8 DIACQVCGLADR---SDIMLLCDN--CDRAFHTACVDPPLADVPDGDWYCSDCVA 57
BLAST of mRNA_Ecto-sp13_S_contig19163.6116.1 vs. uniprot
Match: A0A6H5JJY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJY6_9PHAE) HSP 1 Score: 64.3 bits (155), Expect = 2.390e-10 Identity = 28/56 (50.00%), Postives = 37/56 (66.07%), Query Frame = 1
Query: 43 CWKCGEVDHRSDGDLIILCDGADCSGASHVGCCDPPLQGVPDGDWFCSECVATGRA 210
C+ C + D + DLI+LCDG C G H C DPPL+ +PD +WFC+ C ATG+A
Sbjct: 116 CFVCKKNDKQ---DLILLCDG--CEGEYHTFCVDPPLRKIPDDEWFCAHCKATGKA 166
BLAST of mRNA_Ecto-sp13_S_contig19163.6116.1 vs. uniprot
Match: A0A7S2CHR1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CHR1_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 5.580e-10 Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 1
Query: 37 RACWKCG--EVDHRSDGDLIILCDGADCSGASHVGCCDPPLQGVPDGDWFCSEC 192
+ C+KCG + + D LI+LCD +C HV C DPPL+ +P+GDWFCS+C
Sbjct: 82 KVCFKCGCQKCGGKHDHSLILLCD--ECDDEYHVYCVDPPLERIPEGDWFCSKC 133
BLAST of mRNA_Ecto-sp13_S_contig19163.6116.1 vs. uniprot
Match: A0A7S3JWR0_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JWR0_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 6.000e-10 Identity = 27/70 (38.57%), Postives = 38/70 (54.29%), Query Frame = 1
Query: 1 AAQRERQAEESDRACWKCGEVDHRSDGDLIILCDGADCSGASHVGCCDPPLQGVPDGDWFCSECVATGRA 210
+A+ E + D C CG D D ++LCDG +C +H+ C +PPL +P GDWFC+ C A A
Sbjct: 766 SAKSETRKPSDDTICSICGSGDL---ADTLLLCDGPNCKNGTHMACLNPPLDEIPQGDWFCASCTAAASA 832
BLAST of mRNA_Ecto-sp13_S_contig19163.6116.1 vs. uniprot
Match: A0A5N6QQE6_9ROSI (Uncharacterized protein n=1 Tax=Carpinus fangiana TaxID=176857 RepID=A0A5N6QQE6_9ROSI) HSP 1 Score: 63.2 bits (152), Expect = 6.050e-10 Identity = 25/59 (42.37%), Postives = 37/59 (62.71%), Query Frame = 1
Query: 31 SDRACWKCGEVDHRSDGDLIILCD----GADCSGASHVGCCDPPLQGVPDGDWFCSECV 195
+D AC CG D G+++++C C +H+ CCDPPLQGVP+ DWFC++C+
Sbjct: 1165 NDIACQVCGSCDR---GEVMLICGDESGSVGCGVGTHIDCCDPPLQGVPEDDWFCAKCI 1220
BLAST of mRNA_Ecto-sp13_S_contig19163.6116.1 vs. uniprot
Match: A0A0A0K5S5_CUCSA (PHD-type domain-containing protein n=1 Tax=Cucumis sativus TaxID=3659 RepID=A0A0A0K5S5_CUCSA) HSP 1 Score: 60.5 bits (145), Expect = 7.800e-10 Identity = 24/60 (40.00%), Postives = 37/60 (61.67%), Query Frame = 1
Query: 28 ESDRACWKCGEVDHRSDGDLIILCDGAD----CSGASHVGCCDPPLQGVPDGDWFCSECV 195
++D AC +CG D G+++++C D C H CC+PPL +P+GDWFCS+C+
Sbjct: 73 DNDIACQECGSRDR---GEVMLICGNEDGSSGCGIGMHTDCCNPPLLDIPEGDWFCSDCI 129 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19163.6116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig19163.6116.1 >prot_Ecto-sp13_S_contig19163.6116.1 ID=prot_Ecto-sp13_S_contig19163.6116.1|Name=mRNA_Ecto-sp13_S_contig19163.6116.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=71bp AAQRERQAEESDRACWKCGEVDHRSDGDLIILCDGADCSGASHVGCCDPPback to top mRNA from alignment at Ecto-sp13_S_contig19163:1115..1464- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig19163.6116.1 ID=mRNA_Ecto-sp13_S_contig19163.6116.1|Name=mRNA_Ecto-sp13_S_contig19163.6116.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=350bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19163:1115..1464- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19163:1115..1464- >mRNA_Ecto-sp13_S_contig19163.6116.1 ID=mRNA_Ecto-sp13_S_contig19163.6116.1|Name=mRNA_Ecto-sp13_S_contig19163.6116.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=213bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19163:1115..1464- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |