mRNA_Ecto-sp13_S_contig1914.6107.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1914.6107.1
Unique NamemRNA_Ecto-sp13_S_contig1914.6107.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1914.6107.1 vs. uniprot
Match: D8LF24_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF24_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 3.810e-43
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 2 
Query:    2 FTGLEDQLLGVVVVEEMPEMQEKKNTLVVANAKMKKELQEIENRILFLLSNSKGNILDDHELIETLASSKKTSTEITLKVAEAEVTEK 265
            FTGLEDQLLGVVVVEEMPEMQEKKNTLVVANAKMKKELQEIENRILFLLSNSKGNILDDHELIETLASSKKTSTEITLKVAEAEVTEK
Sbjct: 3274 FTGLEDQLLGVVVVEEMPEMQEKKNTLVVANAKMKKELQEIENRILFLLSNSKGNILDDHELIETLASSKKTSTEITLKVAEAEVTEK 3361
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BLAST of mRNA_Ecto-sp13_S_contig1914.6107.1 vs. uniprot
Match: A0A6H5JN05_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN05_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 7.870e-39
Identity = 87/106 (82.08%), Postives = 88/106 (83.02%), Query Frame = 2 
Query:    2 FTGLEDQLLGVVVVEEMPEMQEKKNTL------------------VVANAKMKKELQEIENRILFLLSNSKGNILDDHELIETLASSKKTSTEITLKVAEAEVTEK 265
            FTGLEDQLLGVVVVEEMPEMQEKKNTL                  +VANAKMKKELQEIENRILFLLSNSKGNILDDHELIETLASSKKTSTEITLKVAEAEVTEK
Sbjct: 2462 FTGLEDQLLGVVVVEEMPEMQEKKNTLDLHNWCMATVTQNVTNKNLVANAKMKKELQEIENRILFLLSNSKGNILDDHELIETLASSKKTSTEITLKVAEAEVTEK 2567
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BLAST of mRNA_Ecto-sp13_S_contig1914.6107.1 vs. uniprot
Match: A0A835YSP2_9STRA (Dynein heavy chain and region D6 of dynein motor-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSP2_9STRA)

HSP 1 Score: 133 bits (335), Expect = 2.230e-34
Identity = 72/87 (82.76%), Postives = 80/87 (91.95%), Query Frame = 2 
Query:    2 FTGLEDQLLGVVVVEEMPEMQEKKNTLVVANAKMKKELQEIENRILFLLSNSKGNILDDHELIETLASSKKTSTEITLKVAEAEVTE 262
            FTGLEDQLLGVVVVEE PEM+E+KN LV ANA+M++ELQ+IE+RILFLLSNS GNILDDHELIETLASSK+TSTEI  KVAEAE TE
Sbjct: 2458 FTGLEDQLLGVVVVEEAPEMEERKNALVAANARMRRELQDIESRILFLLSNSTGNILDDHELIETLASSKRTSTEIAAKVAEAEATE 2544
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BLAST of mRNA_Ecto-sp13_S_contig1914.6107.1 vs. uniprot
Match: A0A482RXV7_9ARCH (AAA_9 domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RXV7_9ARCH)

HSP 1 Score: 130 bits (327), Expect = 3.970e-34
Identity = 69/88 (78.41%), Postives = 82/88 (93.18%), Query Frame = 2 
Query:    2 FTGLEDQLLGVVVVEEMPEMQEKKNTLVVANAKMKKELQEIENRILFLLSNSKGNILDDHELIETLASSKKTSTEITLKVAEAEVTEK 265
            FTGLEDQLLGVVVVEEMPEM+EKKN+LV++NA+M+KELQE+E++ILF+LSNS GNILDDH+LIETLA+SK  S EIT KV EAE+TEK
Sbjct:  120 FTGLEDQLLGVVVVEEMPEMEEKKNSLVISNARMRKELQELEDQILFMLSNSTGNILDDHKLIETLATSKVKSQEITAKVQEAEITEK 207
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BLAST of mRNA_Ecto-sp13_S_contig1914.6107.1 vs. uniprot
Match: F0YHW5_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHW5_AURAN)

HSP 1 Score: 130 bits (327), Expect = 2.690e-33
Identity = 71/86 (82.56%), Postives = 80/86 (93.02%), Query Frame = 2 
Query:    8 GLEDQLLGVVVVEEMPEMQEKKNTLVVANAKMKKELQEIENRILFLLSNSKGNILDDHELIETLASSKKTSTEITLKVAEAEVTEK 265
            GLEDQLLGVVVVEE P+M+EKKN+LVVANA MKKEL+EIE++IL++LSNS GNILDDHELIETLASSKKTS EIT KVAEAE TE+
Sbjct: 3250 GLEDQLLGVVVVEERPDMEEKKNSLVVANASMKKELKEIEDKILYMLSNSTGNILDDHELIETLASSKKTSQEITAKVAEAETTER 3335
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BLAST of mRNA_Ecto-sp13_S_contig1914.6107.1 vs. uniprot
Match: A0A7S1U4X8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U4X8_9STRA)

HSP 1 Score: 124 bits (310), Expect = 5.160e-31
Identity = 66/88 (75.00%), Postives = 80/88 (90.91%), Query Frame = 2 
Query:    2 FTGLEDQLLGVVVVEEMPEMQEKKNTLVVANAKMKKELQEIENRILFLLSNSKGNILDDHELIETLASSKKTSTEITLKVAEAEVTEK 265
            FTGLEDQLLG VV+EE+PEM+EKKN+LVV+NA+MKKEL++IE++IL++LSNS GNILDD ELI+ LA SKK S EI +KVAEAEVTEK
Sbjct:  293 FTGLEDQLLGTVVIEELPEMEEKKNSLVVSNARMKKELKDIEDKILYMLSNSTGNILDDVELIDALAGSKKKSQEIKIKVAEAEVTEK 380
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BLAST of mRNA_Ecto-sp13_S_contig1914.6107.1 vs. uniprot
Match: A0A7S2GB44_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GB44_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.550e-28
Identity = 61/88 (69.32%), Postives = 74/88 (84.09%), Query Frame = 2 
Query:    2 FTGLEDQLLGVVVVEEMPEMQEKKNTLVVANAKMKKELQEIENRILFLLSNSKGNILDDHELIETLASSKKTSTEITLKVAEAEVTEK 265
            F+GLEDQLLGV V+EE P+M+EKK++LV+ANA+MK EL+ IE+ IL LL+NS GNILDD ELI+TL +SK TS  I  KVAEAEVTEK
Sbjct:   21 FSGLEDQLLGVCVIEERPDMEEKKSSLVIANARMKNELKAIEDTILKLLANSTGNILDDVELIDTLGTSKVTSDLINAKVAEAEVTEK 108
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BLAST of mRNA_Ecto-sp13_S_contig1914.6107.1 vs. uniprot
Match: A0A5B8MFC9_9CHLO (Heavy chain of dynein n=2 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MFC9_9CHLO)

HSP 1 Score: 115 bits (289), Expect = 3.630e-28
Identity = 63/86 (73.26%), Postives = 75/86 (87.21%), Query Frame = 2 
Query:    8 GLEDQLLGVVVVEEMPEMQEKKNTLVVANAKMKKELQEIENRILFLLSNSKGNILDDHELIETLASSKKTSTEITLKVAEAEVTEK 265
            GLEDQLLG+VV +E P++ E KN LV++NAKMKKEL+EIE++ILFLLSNS+GNILDD ELI+TLA SK TS EI+ KVAEAE TEK
Sbjct: 3175 GLEDQLLGIVVTQERPDLAEMKNQLVISNAKMKKELKEIEDKILFLLSNSQGNILDDEELIDTLAKSKVTSNEISAKVAEAEKTEK 3260
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1914.6107.1 vs. uniprot
Match: A0A7S2SM23_9STRA (Hypothetical protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SM23_9STRA)

HSP 1 Score: 106 bits (265), Expect = 3.080e-27
Identity = 57/81 (70.37%), Postives = 72/81 (88.89%), Query Frame = 2 
Query:    8 GLEDQLLGVVVVEEMPEMQEKKNTLVVANAKMKKELQEIENRILFLLSNSKGNILDDHELIETLASSKKTSTEITLKVAEA 250
            GLE+QLLG+V+V E+PE++E++N +VV NA M K+LQEIE++ILF+LSNS+GNILDD ELIETLA+SK TS EI LKVAEA
Sbjct:  100 GLEEQLLGLVMVNELPELEERRNEIVVQNAAMGKQLQEIEDKILFMLSNSQGNILDDAELIETLATSKVTSQEINLKVAEA 180
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1914.6107.1 vs. uniprot
Match: A0A2P4XJE1_9STRA (Sporangia induced dynein heavy chain n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XJE1_9STRA)

HSP 1 Score: 113 bits (282), Expect = 3.140e-27
Identity = 62/86 (72.09%), Postives = 74/86 (86.05%), Query Frame = 2 
Query:    8 GLEDQLLGVVVVEEMPEMQEKKNTLVVANAKMKKELQEIENRILFLLSNSKGNILDDHELIETLASSKKTSTEITLKVAEAEVTEK 265
            GLEDQ LGVVV EEMPE+ EKKN+LVVANA+MK EL EIEN+IL++L+NSKGNILDD ELI+TL  +K TS +I  K+AEAE+TEK
Sbjct:  360 GLEDQALGVVVQEEMPELAEKKNSLVVANARMKAELVEIENKILYMLANSKGNILDDTELIDTLGKAKVTSEDINEKMAEAEITEK 445
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1914.6107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF24_ECTSI3.810e-43100.00Dynein heavy chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JN05_9PHAE7.870e-3982.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YSP2_9STRA2.230e-3482.76Dynein heavy chain and region D6 of dynein motor-d... [more]
A0A482RXV7_9ARCH3.970e-3478.41AAA_9 domain-containing protein (Fragment) n=1 Tax... [more]
F0YHW5_AURAN2.690e-3382.56Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S1U4X8_9STRA5.160e-3175.00Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S2GB44_9STRA1.550e-2869.32Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A5B8MFC9_9CHLO3.630e-2873.26Heavy chain of dynein n=2 Tax=Chloropicon primus T... [more]
A0A7S2SM23_9STRA3.080e-2770.37Hypothetical protein (Fragment) n=1 Tax=labyrinthu... [more]
A0A2P4XJE1_9STRA3.140e-2772.09Sporangia induced dynein heavy chain n=1 Tax=Phyto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1914contigEcto-sp13_S_contig1914:12338..13185 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size268
Hectar predicted targeting categoryother localisation
Exons3
Cds size267
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462975.2527509-CDS-Ecto-sp13_S_contig1914:12338..123671681462975.2527509-CDS-Ecto-sp13_S_contig1914:12338..12367Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1914 12339..12367 -
1681462975.26701-CDS-Ecto-sp13_S_contig1914:12681..128361681462975.26701-CDS-Ecto-sp13_S_contig1914:12681..12836Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1914 12682..12836 -
1681462975.2773716-CDS-Ecto-sp13_S_contig1914:13102..131851681462975.2773716-CDS-Ecto-sp13_S_contig1914:13102..13185Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1914 13103..13185 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1914.6107.1prot_Ecto-sp13_S_contig1914.6107.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1914 12339..13185 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1914.6107.1

>prot_Ecto-sp13_S_contig1914.6107.1 ID=prot_Ecto-sp13_S_contig1914.6107.1|Name=mRNA_Ecto-sp13_S_contig1914.6107.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
LYWPRGPAAWSGGRRGDAGDAGEKEHLSGCKRENEERATGNREPHPVFVE
QLQGEHPGRSRADRNARLFKENFYRNYAQGGGSGGDREG
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mRNA from alignment at Ecto-sp13_S_contig1914:12338..13185-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1914.6107.1 ID=mRNA_Ecto-sp13_S_contig1914.6107.1|Name=mRNA_Ecto-sp13_S_contig1914.6107.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=848bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1914:12338..13185- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTTACTGGCCTCGAGGACCAGCTGCTTGGAGTGGTGGTCGTCGAGGAGA
TGCCGGAGATGCAGGAGAAAAAGAACACCTTAGGTGTGTACTCCCTTCTG
GGCTTGTGTCATTCTGACGCCACTGTCCTGCCACCTTGAGTCGTAAATAA
TATCTTTAATCGGCACTTGTCTACGCTGGTTGATGTTCTACCTTACGGAC
TTGCACTATTGGTGCATGGCAACGTGGCCAACGGCATTACGAACAAGAGC
CGTGGGTCGTGGTGTGAACCAAGCGATATTTCATGGGGGCCTACGTACTA
TGTAGCTGATATTTCACACAATCGTCTGCCTCGTCCCGTGCATTTGCAGT
GGTTGCAAACGCGAAAATGAAGAAAGAGCTACAGGAAATCGAGAACCGCA
TCCTGTTTTTGTTGAGCAACTCCAAGGGGAACATCCTGGACGATCACGAG
CTGATCGAAACGCTCGCCTCTTCAAAGAAAACTTCTACAGAAATTACGCT
CAAGGTATCAGCTGCCGTTGTCGTTGCTGTTGTTGTTGCTGATGATGAGA
TGTTGTTACCGCTGGTGATGATGCTCTGTTGGTGGTTATTTCTGGATTTG
TGGTGTTGAGCTTCTTTCGTCGTATCTATTCTCCGACATCTTTCTTAGAA
GGCGCTCGTGAATATCGCTCAAGGTACTCTAGCAAACTACTACGGAGAAA
GAAAATGCACCAAAACAGATGCGATACTGAAGCAGGTGTCGCCCCGTAAT
TTTAGGACGTTTCTGAGACACCCACCAAACACACCCTACTTACCTCCTCC
GCTTTCTGACCAAAACAGGTGGCGGAAGCGGAGGTGACAGAGAAGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1914:12338..13185-

>mRNA_Ecto-sp13_S_contig1914.6107.1 ID=mRNA_Ecto-sp13_S_contig1914.6107.1|Name=mRNA_Ecto-sp13_S_contig1914.6107.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1914:12338..13185- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTTACTGGCCTCGAGGACCAGCTGCTTGGAGTGGTGGTCGTCGAGGAGA
TGCCGGAGATGCAGGAGAAAAAGAACACCTTAGTGGTTGCAAACGCGAAA
ATGAAGAAAGAGCTACAGGAAATCGAGAACCGCATCCTGTTTTTGTTGAG
CAACTCCAAGGGGAACATCCTGGACGATCACGAGCTGATCGAAACGCTCG
CCTCTTCAAAGAAAACTTCTACAGAAATTACGCTCAAGGTGGCGGAAGCG
GAGGTGACAGAGAAGGA
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