mRNA_Ecto-sp13_S_contig19139.6104.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig19139.6104.1 vs. uniprot
Match: D7FXV4_ECTSI (Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase, family GT13 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXV4_ECTSI) HSP 1 Score: 288 bits (737), Expect = 4.380e-93 Identity = 146/156 (93.59%), Postives = 149/156 (95.51%), Query Frame = 1
Query: 1 SRPEYLERTLNAVAEYHPGSSRGASFAIPVVISQDGSSSAVEEVISRFKTSMAGRAHVTHIHHTPVRRENRPYFKLSAHYEWALSQVFDELFQTGYSSAAVDKVIILEEDLEIAPDFFEYFSAMAPLLDSDETLMAVSAWNDNGQAAHVKASCGLI 468
+RPEYLERTLNAVAEYHPGSSRGASFAIPVVISQDGSSSAVEEVISRFKTSMAGRAHVTHIHHTP RE+RPYFKLSAHYEWALSQVFDELFQTGYSSAAVDK IILEEDLEIAPDFFEYFSAMAPLLDSDETLMAVSAWNDNGQAAHVK + L
Sbjct: 193 NRPEYLERTLNAVAEYHPGSSRGASFAIPVVISQDGSSSAVEEVISRFKTSMAGRAHVTHIHHTPAPRESRPYFKLSAHYEWALSQVFDELFQTGYSSAAVDKAIILEEDLEIAPDFFEYFSAMAPLLDSDETLMAVSAWNDNGQAAHVKDNRALF 348
BLAST of mRNA_Ecto-sp13_S_contig19139.6104.1 vs. uniprot
Match: A0A6H5L776_9PHAE (GT13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L776_9PHAE) HSP 1 Score: 285 bits (728), Expect = 6.380e-92 Identity = 144/148 (97.30%), Postives = 145/148 (97.97%), Query Frame = 1
Query: 1 SRPEYLERTLNAVAEYHPGSSRGASFAIPVVISQDGSSSAVEEVISRFKTSMAGRAHVTHIHHTPVRRENRPYFKLSAHYEWALSQVFDELFQTGYSSAAVDKVIILEEDLEIAPDFFEYFSAMAPLLDSDETLMAVSAWNDNGQAAH 444
+RPEYLERTL AVAEYHPGSSRGASFAIPVVISQDG SSAVEEVISRFKTSMAGRAHVTHIHHTPV RENRPYFKLSAHYEWALSQVFDELFQTGYSSAAVDKVIILEEDLEIAPDFFEYFSAMAPLLDSDETLMAVSAWNDNGQAAH
Sbjct: 97 NRPEYLERTLKAVAEYHPGSSRGASFAIPVVISQDGPSSAVEEVISRFKTSMAGRAHVTHIHHTPVGRENRPYFKLSAHYEWALSQVFDELFQTGYSSAAVDKVIILEEDLEIAPDFFEYFSAMAPLLDSDETLMAVSAWNDNGQAAH 244
BLAST of mRNA_Ecto-sp13_S_contig19139.6104.1 vs. uniprot
Match: A0A7S3XJB6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XJB6_HETAK) HSP 1 Score: 125 bits (314), Expect = 9.450e-32 Identity = 70/163 (42.94%), Postives = 92/163 (56.44%), Query Frame = 1
Query: 4 RPEYLERTLNAVAEYHPGSSRGASFAIPVVISQDGSSSAVEEVISRFKTSMAGRAHVTHIHHTPVRRENR--------PYFKLSAHYEWALSQVFDELFQTGYSSAAVDKVIILEEDLEIAPDFFEYFSAMAPLLDSDETLMAVSAWNDNGQAAHVKASCGLI 468
R +YLERTL AV YHPG +P++ISQDG+ + V V+ F+ A + HH +E Y KL+ H+ WA F L++ + +VI+LEEDLE+APDFFE F A+APLLD+D TL+A SAWNDNGQ HV L+
Sbjct: 11 RADYLERTLGAVLRYHPGEDT-----VPIIISQDGNDAKVVGVVDAFRAQFAAKHPRVRFHHIHRPQEGNLRGGGRQDGYQKLAQHFGWA----FRRLWEDPALTPGAARVIVLEEDLEVAPDFFELFGALAPLLDTDPTLLAASAWNDNGQRGHVAEPAALL 164
BLAST of mRNA_Ecto-sp13_S_contig19139.6104.1 vs. uniprot
Match: A0A482SQF6_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SQF6_9ARCH) HSP 1 Score: 124 bits (310), Expect = 1.230e-30 Identity = 64/146 (43.84%), Postives = 93/146 (63.70%), Query Frame = 1
Query: 1 SRPEYLERTLNAVAEYHPGSSRGASFAIPVVISQDGSSSAVEEVISRFKTSMAGRAH--VTHIHHTPVRRENRPYFKLSAHYEWALSQVFDELFQTGYSSAAVDKVIILEEDLEIAPDFFEYFSAMAPLLDSDETLMAVSAWNDNG 432
+RP+YL + L+ + +YHP + A+P+ ISQDG++ AV + + F A ++ V H+HH + YF L+ HY+WAL+ VF + ++ VIILEEDL+IAPDFFE+F+A P+ DSD +L+AVSAWNDNG
Sbjct: 83 NRPDYLSKCLSFILQYHPNT------AVPITISQDGANHAVNDAVDGFSRQFALKSTLPVKHLHHPRLGHYENGYFALADHYKWALNNVF--------ADTSISHVIILEEDLQIAPDFFEFFAATQPIYDSDPSLLAVSAWNDNG 214
BLAST of mRNA_Ecto-sp13_S_contig19139.6104.1 vs. uniprot
Match: G7J9B0_MEDTR (Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase n=3 Tax=Trifolieae TaxID=163742 RepID=G7J9B0_MEDTR) HSP 1 Score: 120 bits (300), Expect = 3.850e-30 Identity = 71/154 (46.10%), Postives = 99/154 (64.29%), Query Frame = 1
Query: 1 SRPEYLERTLNAVAEYHPGSSRGASFAIPVVISQDGSSSAVEEVISRFKTSMAGRAHVTHIHHTPVRRENRP-----YFKLSAHYEWALSQVFDELFQTGYSSAAVDKVIILEEDLEIAPDFFEYFSAMAPLLDSDETLMAVSAWNDNGQAAHV 447
+R +YLERT+N+V +Y R S P+ +SQDGS+S V+ R S +H+ H+ PV+ E RP Y+K++ HY+WAL Q+FD+ ++VIILE+D+EIAPDFF+YF AMA LLD D+++MAVS+WNDNGQ V
Sbjct: 114 NRADYLERTINSVLKYQ----RPISSRFPLFVSQDGSNSDVK----RKALSYDELSHMQHLDFEPVQTE-RPGELIAYYKIARHYKWALGQLFDK--------HNFNRVIILEDDMEIAPDFFDYFEAMATLLDKDKSIMAVSSWNDNGQKQFV 250
BLAST of mRNA_Ecto-sp13_S_contig19139.6104.1 vs. uniprot
Match: U5D4N5_AMBTC (Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase n=1 Tax=Amborella trichopoda TaxID=13333 RepID=U5D4N5_AMBTC) HSP 1 Score: 115 bits (287), Expect = 3.720e-28 Identity = 65/155 (41.94%), Postives = 98/155 (63.23%), Query Frame = 1
Query: 1 SRPEYLERTLNAVAEYHPGSSRGASFAIPVVISQDGSSSAVEEVISRFKTSMAGRAHVTHIHHTPVRRENRP-----YFKLSAHYEWALSQVFDELFQTGYSSAAVDKVIILEEDLEIAPDFFEYFSAMAPLLDSDETLMAVSAWNDNGQAAHVK 450
+RP+YLERT+ ++ +YH + + P+ +SQDG+ E + S ++ HI +P+R E RP Y+K++ HY+WAL ++FDE Y+ + +VIILE+D+EIAPDFF+YF A + LL+ D T+MAVS+WNDNGQ V+
Sbjct: 115 NRPDYLERTIQSILKYH----KSVASKFPLFVSQDGT----HETVKSKALSYDQVTYMQHIESSPIRTE-RPGELIAYYKIANHYKWALHRLFDE-----YNFS---RVIILEDDMEIAPDFFDYFGAASLLLEKDNTIMAVSSWNDNGQKQFVQ 252
BLAST of mRNA_Ecto-sp13_S_contig19139.6104.1 vs. uniprot
Match: A0A7S4C403_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C403_CHRCT) HSP 1 Score: 115 bits (289), Expect = 1.040e-27 Identity = 72/157 (45.86%), Postives = 92/157 (58.60%), Query Frame = 1
Query: 1 SRPEYLERTLNAVAEYHPGSSRGASFAIPVVISQDGSSSAVEEVISRFKTSMAGRAHVTH----IHH---TPVRRENRP-YFKLSAHYEWALSQVFDELFQTGYSSAAVDKVIILEEDLEIAPDFFEYFSAMAPLLDSDETLMAVSAWNDNGQAAHV 447
+RPEYLE+ L+ + ++HPG A PV +SQDG + V+ VI R G H+ H IH TP+ +P Y LS HY WAL+ +F E D +IILEED+EIAPDFF YFSA APLL +D +L+ VSA+NDNGQ H
Sbjct: 58 NRPEYLEQALSTIFKHHPGGD-----AYPVYVSQDGPNDKVKRVIERH-----GARHLVHPRQPIHFGPSTPIYLVRKPGYAYLSVHYAWALNTIFGE-------PERFDGIIILEEDIEIAPDFFGYFSATAPLLSADASLLCVSAFNDNGQPDHA 197
BLAST of mRNA_Ecto-sp13_S_contig19139.6104.1 vs. uniprot
Match: A0A5N6PP21_9ASTR (Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PP21_9ASTR) HSP 1 Score: 115 bits (287), Expect = 3.760e-27 Identity = 67/154 (43.51%), Postives = 97/154 (62.99%), Query Frame = 1
Query: 1 SRPEYLERTLNAVAEYHPGSSRGASFAIPVVISQDGSSSAVEEVISRFKTSMAGRAHVTHIHHTPVRRENRP-----YFKLSAHYEWALSQVFDELFQTGYSSAAVDKVIILEEDLEIAPDFFEYFSAMAPLLDSDETLMAVSAWNDNGQAAHV 447
+R +YLERT+ ++ +YH AS PV ISQDGS+S V +K A++ H+ + PV E RP Y+K++ HY+WAL Q+F + + ++VIILE+D+EI+PDFF+YF A A LLD D+++MA+S+WNDNGQ V
Sbjct: 114 NRADYLERTIKSILKYHAS----ASSKFPVFISQDGSNSDVRTKALSYKQL----AYMQHLDYEPVHTE-RPGELIAYYKIARHYKWALDQLFYK--------HSFNRVIILEDDMEISPDFFDYFEAGADLLDKDKSIMAISSWNDNGQKQFV 250
BLAST of mRNA_Ecto-sp13_S_contig19139.6104.1 vs. uniprot
Match: A0A7I8LMY3_SPIIN (Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8LMY3_SPIIN) HSP 1 Score: 114 bits (286), Expect = 4.800e-27 Identity = 65/154 (42.21%), Postives = 97/154 (62.99%), Query Frame = 1
Query: 1 SRPEYLERTLNAVAEYHPGSSRGASFAIPVVISQDGSSSAVEEVISRFKTSMAGRAHVTHIHHTPVRRENRP-----YFKLSAHYEWALSQVFDELFQTGYSSAAVDKVIILEEDLEIAPDFFEYFSAMAPLLDSDETLMAVSAWNDNGQAAHV 447
+RP+YLERT+ ++ +YH R + P+ ISQDG++ V+ + ++ H+ PV E RP Y+K+++HY+WAL ++F F+ +S +V+ILE+D+EIAPDFF YF A A LLD+D+T+MAVS+WNDNGQ V
Sbjct: 100 NRPDYLERTIQSILKYH----RSVASKFPLFISQDGTNQGVKSKALSYNQI----TYMQHLDFGPVHPE-RPGELIAYYKIASHYKWALDELF---FKHNFS-----RVVILEDDMEIAPDFFSYFEAAATLLDNDKTIMAVSSWNDNGQMQFV 236
BLAST of mRNA_Ecto-sp13_S_contig19139.6104.1 vs. uniprot
Match: A0A4Y7II95_PAPSO (Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase n=1 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7II95_PAPSO) HSP 1 Score: 112 bits (279), Expect = 5.620e-27 Identity = 66/154 (42.86%), Postives = 97/154 (62.99%), Query Frame = 1
Query: 1 SRPEYLERTLNAVAEYHPGSSRGASFAIPVVISQDGSSSAVEEVISRFKTSMAGRAHVTHIHHTPVRRENRP-----YFKLSAHYEWALSQVFDELFQTGYSSAAVDKVIILEEDLEIAPDFFEYFSAMAPLLDSDETLMAVSAWNDNGQAAHV 447
+RP+YLERT+ +V +Y + + P+ +SQDG + V+ +K +++ H+ V E RP Y+K+++HY+WAL Q+F++ Y +VIILE+D+EIAPDFFEYF A A LLDSD+T+MAVS+WNDNGQ +V
Sbjct: 4 NRPDYLERTIESVLKYQ----QSVASKFPLFVSQDGPNENVKSKALSYKQL----SYMQHLDFEEVHTE-RPGEIIAYYKIASHYKWALDQLFNK--HNFY------RVIILEDDMEIAPDFFEYFEAAAALLDSDKTIMAVSSWNDNGQKQYV 140 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19139.6104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig19139.6104.1 >prot_Ecto-sp13_S_contig19139.6104.1 ID=prot_Ecto-sp13_S_contig19139.6104.1|Name=mRNA_Ecto-sp13_S_contig19139.6104.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=166bp SRPEYLERTLNAVAEYHPGSSRGASFAIPVVISQDGSSSAVEEVISRFKTback to top mRNA from alignment at Ecto-sp13_S_contig19139:433..3234+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig19139.6104.1 ID=mRNA_Ecto-sp13_S_contig19139.6104.1|Name=mRNA_Ecto-sp13_S_contig19139.6104.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2802bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19139:433..3234+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19139:433..3234+ >mRNA_Ecto-sp13_S_contig19139.6104.1 ID=mRNA_Ecto-sp13_S_contig19139.6104.1|Name=mRNA_Ecto-sp13_S_contig19139.6104.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=498bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19139:433..3234+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |