mRNA_Ecto-sp13_S_contig19130.6102.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19130.6102.1
Unique NamemRNA_Ecto-sp13_S_contig19130.6102.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19130.6102.1 vs. uniprot
Match: D7G877_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G877_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 1.250e-35
Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 1 
Query:    1 RVSLNSGTWTDDEHKGFLRGLEVYGHGNWNAMAVFVLSRSPPQIEAYAQDYMAEKEAAHNLQQV 192
            RV LNSGTWTD+EHKGFLRGLEVYGHGNWNAMAVFVLSRSPPQIEAYAQDYMAEKE AH+LQQV
Sbjct:    2 RVPLNSGTWTDEEHKGFLRGLEVYGHGNWNAMAVFVLSRSPPQIEAYAQDYMAEKETAHDLQQV 65
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BLAST of mRNA_Ecto-sp13_S_contig19130.6102.1 vs. uniprot
Match: A0A6H5K163_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K163_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.340e-24
Identity = 48/67 (71.64%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:    4 VSLNSGTWTDDEHKGFLRGLEVYGHGNWNAMAVFVLSRSPPQIEAYAQDYMAEKEAAHNLQQVMAQE 204
            V LN G WTD+EH+GFL GLEVYGHGNWNA+AVFV +RSPPQIEAYA+ Y A  EA  NLQQV  Q+
Sbjct:   16 VQLNGGRWTDEEHQGFLSGLEVYGHGNWNAIAVFVPTRSPPQIEAYARQYFALGEAVQNLQQVDEQQ 82
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BLAST of mRNA_Ecto-sp13_S_contig19130.6102.1 vs. uniprot
Match: D7FPI5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI5_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 5.390e-20
Identity = 40/62 (64.52%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:    1 RVSLNSGTWTDDEHKGFLRGLEVYGHGNWNAMAVFVLSRSPPQIEAYAQDYMAEKEAAHNLQ 186
            R+ L +  WT+DEH GFL GLEVYG+GNW+A+AVFV SRS PQIEAYAQ Y+A+ E+ H+ Q
Sbjct:    5 RIPLTTEGWTEDEHNGFLHGLEVYGYGNWDAIAVFVPSRSSPQIEAYAQQYVAQGESVHSPQ 66
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BLAST of mRNA_Ecto-sp13_S_contig19130.6102.1 vs. uniprot
Match: D7G876_ECTSI (MYB DNA binding protein/ transcription factor-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G876_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 3.200e-19
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    4 VSLNSGTWTDDEHKGFLRGLEVYGHGNWNAMAVFVLSRSPPQIEAYAQDYMAE 162
            +  + G WTD+EH+GFL GLEVYG+GNW+A+AVFV SRSPPQIEAYAQ Y+A+
Sbjct:   19 LDTSGGRWTDEEHQGFLHGLEVYGYGNWDAIAVFVPSRSPPQIEAYAQQYVAQ 71
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BLAST of mRNA_Ecto-sp13_S_contig19130.6102.1 vs. uniprot
Match: A0A6H5JDE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDE4_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 6.000e-19
Identity = 45/71 (63.38%), Postives = 53/71 (74.65%), Query Frame = 1 
Query:    4 VSLNSGTWTDDEHKGFLRGLEVYGHGNWNAMAVFVLSRSPPQIEAYAQDYMAEKEAAHNLQQVMAQEPSGA 216
            V  N GTWTD EH+GFLRGLEVYG+GN +A+ +FV SRSP QIEAYAQ ++AE EA  +L QV  Q  S A
Sbjct:   10 VPFNCGTWTDVEHQGFLRGLEVYGYGNCDAIGIFVPSRSPLQIEAYAQWHLAEVEAVRHLHQVGVQGTSPA 80
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BLAST of mRNA_Ecto-sp13_S_contig19130.6102.1 vs. uniprot
Match: D7G878_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G878_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.670e-18
Identity = 43/63 (68.25%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    4 VSLNSGTWTDDEHKGFLRGLEVYGHGNWNAMAVFVLSRSPPQIEAYAQDYMAEKEAAHNLQQV 192
            V  N GTWTD EH+GFLRGLEVYG+GN +A+ +FV SRSP QIEAYAQ Y AE EA  +L QV
Sbjct:   15 VPFNCGTWTDVEHQGFLRGLEVYGYGNCDAIGIFVPSRSPLQIEAYAQWYFAEGEAVRHLHQV 77
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BLAST of mRNA_Ecto-sp13_S_contig19130.6102.1 vs. uniprot
Match: A0A3L6G600_MAIZE (Transcription factor DIVARICATA n=3 Tax=Zea mays TaxID=4577 RepID=A0A3L6G600_MAIZE)

HSP 1 Score: 61.6 bits (148), Expect = 7.860e-8
Identity = 30/49 (61.22%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:   25 WTDDEHKGFLRGLEVYGHGNW-NAMAVFVLSRSPPQIEAYAQDYMAEKE 168
            WT DEHK FLRGLEVYG GNW N    FV +R+P QI ++AQ Y   KE
Sbjct:  158 WTQDEHKNFLRGLEVYGRGNWKNISKYFVPTRTPIQICSHAQKYFHRKE 206
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BLAST of mRNA_Ecto-sp13_S_contig19130.6102.1 vs. uniprot
Match: A0A1Z5R1H9_SORBI (Uncharacterized protein n=1 Tax=Sorghum bicolor TaxID=4558 RepID=A0A1Z5R1H9_SORBI)

HSP 1 Score: 59.7 bits (143), Expect = 3.140e-7
Identity = 29/49 (59.18%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:   25 WTDDEHKGFLRGLEVYGHGNW-NAMAVFVLSRSPPQIEAYAQDYMAEKE 168
            WT DEHK FLRGLEVYG G+W N    FV +R+P QI ++AQ Y   KE
Sbjct:  103 WTHDEHKNFLRGLEVYGRGSWKNISRYFVPTRTPIQICSHAQKYFQRKE 151
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BLAST of mRNA_Ecto-sp13_S_contig19130.6102.1 vs. uniprot
Match: C5WSF4_SORBI (Uncharacterized protein n=2 Tax=Sorghum bicolor TaxID=4558 RepID=C5WSF4_SORBI)

HSP 1 Score: 59.3 bits (142), Expect = 3.560e-7
Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:   25 WTDDEHKGFLRGLEVYGHGNW-NAMAVFVLSRSPPQIEAYAQDYMAEKE 168
            WT DEH+ FLRGL VYG GNW N    FV S++P Q+ ++AQ Y   KE
Sbjct:  112 WTTDEHRQFLRGLHVYGRGNWKNISRHFVTSKTPVQVSSHAQKYFLRKE 160
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BLAST of mRNA_Ecto-sp13_S_contig19130.6102.1 vs. uniprot
Match: A0A811S846_9POAL (Hypothetical protein n=1 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811S846_9POAL)

HSP 1 Score: 57.8 bits (138), Expect = 5.470e-7
Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:   25 WTDDEHKGFLRGLEVYGHGNWNAMAV-FVLSRSPPQIEAYAQDYMAEKE 168
            WT DEH+ FLRGL VYG GNWN ++  FV ++SP  + ++AQ Y   KE
Sbjct:  119 WTTDEHRQFLRGLHVYGRGNWNNISRHFVTTKSPVLVSSHAQKYFLRKE 167
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19130.6102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G877_ECTSI1.250e-3593.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K163_9PHAE1.340e-2471.64MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FPI5_ECTSI5.390e-2064.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G876_ECTSI3.200e-1969.81MYB DNA binding protein/ transcription factor-like... [more]
A0A6H5JDE4_9PHAE6.000e-1963.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G878_ECTSI1.670e-1868.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A3L6G600_MAIZE7.860e-861.22Transcription factor DIVARICATA n=3 Tax=Zea mays T... [more]
A0A1Z5R1H9_SORBI3.140e-759.18Uncharacterized protein n=1 Tax=Sorghum bicolor Ta... [more]
C5WSF4_SORBI3.560e-755.10Uncharacterized protein n=2 Tax=Sorghum bicolor Ta... [more]
A0A811S846_9POAL5.470e-753.06Hypothetical protein n=1 Tax=Miscanthus lutariorip... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19130contigEcto-sp13_S_contig19130:1139..2325 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop1
Start0
Seed ortholog score61.6
Seed ortholog evalue4.5e-07
Seed eggNOG ortholog4577.GRMZM2G422083_P01
Model size570
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
EggNOG OGs382MW@33090,3GRDR@35493,3IR39@38820,3M6MH@4447,KOG0724@1,KOG0724@2759
Cds size570
COG Functional cat.K
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462975.1031964-CDS-Ecto-sp13_S_contig19130:1138..15061681462975.1031964-CDS-Ecto-sp13_S_contig19130:1138..1506Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19130 1139..1506 -
1681462975.1126978-CDS-Ecto-sp13_S_contig19130:2123..23251681462975.1126978-CDS-Ecto-sp13_S_contig19130:2123..2325Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19130 2124..2325 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19130.6102.1prot_Ecto-sp13_S_contig19130.6102.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19130 1139..2325 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19130.6102.1

>prot_Ecto-sp13_S_contig19130.6102.1 ID=prot_Ecto-sp13_S_contig19130.6102.1|Name=mRNA_Ecto-sp13_S_contig19130.6102.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=190bp
RVSLNSGTWTDDEHKGFLRGLEVYGHGNWNAMAVFVLSRSPPQIEAYAQD
YMAEKEAAHNLQQVMAQEPSGADHAASSRNGGGRCDVEFGGGSSSGTPSL
IVSSVRPPCHSANREQRQPQKLSPPLPQHAPEQQLLPERQHHRQQQEERF
GFQLRGPVGPTCDSNVSDSEDEDEVASIFATDQACFGIL*
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mRNA from alignment at Ecto-sp13_S_contig19130:1139..2325-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19130.6102.1 ID=mRNA_Ecto-sp13_S_contig19130.6102.1|Name=mRNA_Ecto-sp13_S_contig19130.6102.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1187bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19130:1139..2325- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGTCTCGCTCAACAGTGGAACATGGACGGACGATGAGCACAAGGGATT
TCTCCGCGGTCTCGAGGTGTACGGCCACGGCAACTGGAACGCCATGGCGG
TCTTCGTGCTCTCTCGAAGCCCTCCCCAGATCGAAGCCTACGCTCAAGAC
TACATGGCGGAAAAGGAAGCTGCCCACAATCTCCAGCAGGTAATGGCACA
AGGTGTGCCCCTTTCGTTGATCTTGGGGTTCAAATCCCTTCAATCATGTT
TTTGGAAACGAAGTGTGCTCTTGGCTGCCATCATTTCCAACGTGCCCTTT
CTCCTTCTAAATGGTTGCGCTGGTCTACAATTCGGTCCCCCGTCAAGCTA
GCACCTCAGCGTCGAGGCCCTAGCTGAATGTTTTCCTCAGCATTCGTCGG
TCCACGTTTTCCCCAGCGACACTCGAATTGAGTTCTACATGCTCCTAGCT
CGGTTCGCAGGAGCTGCGCGTTCCTCTTGAGATTTACACGGAAATGTTTT
CTGCTTCACTGTTTAATATCATGCGGGCACGGTGTGTGCCCAGAGGGTAG
AACTGGCTGTCGCCAACACACGTATGCCAGCGCACCTTCCGCCTGATCGC
TGTTCATGCTACCTAAGATCAACACTGGCGGGTAAGTGTATCCGGAATAA
ACAAGCTCAGGTCGCCAACTGGCTGGTTTATTTTTTCGGCCATGGTGCAA
CCCACACCCTTCCCGTGTCTCGTCGACCATATTACCCGTCCTTACCCTCA
CCCTCCCCCGCCGATAATCTCGATCGCCATGTCCAAACGTTTCTGTCCAT
CTGACCCAGGTACGTCCAGAGCCATCCGGCGCGGATCACGCAGCCAGTTC
GCGTAACGGTGGCGGAAGGTGCGATGTCGAGTTCGGCGGTGGCAGCAGTA
GTGGAACGCCCTCTCTCATCGTTTCAAGCGTGCGACCACCCTGTCACAGT
GCGAACCGTGAACAGCGGCAGCCGCAAAAGCTGTCACCGCCGCTGCCGCA
ACACGCGCCAGAGCAGCAGCTTCTCCCGGAACGACAGCATCACCGCCAGC
AGCAAGAAGAGCGCTTTGGTTTTCAGTTGCGGGGGCCGGTGGGTCCGACA
TGCGACAGCAACGTCTCCGACAGCGAAGACGAAGACGAAGTGGCGAGCAT
TTTCGCTACAGATCAAGCTTGTTTCGGCATCCTTTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19130:1139..2325-

>mRNA_Ecto-sp13_S_contig19130.6102.1 ID=mRNA_Ecto-sp13_S_contig19130.6102.1|Name=mRNA_Ecto-sp13_S_contig19130.6102.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=570bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19130:1139..2325- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGTCTCGCTCAACAGTGGAACATGGACGGACGATGAGCACAAGGGATT
TCTCCGCGGTCTCGAGGTGTACGGCCACGGCAACTGGAACGCCATGGCGG
TCTTCGTGCTCTCTCGAAGCCCTCCCCAGATCGAAGCCTACGCTCAAGAC
TACATGGCGGAAAAGGAAGCTGCCCACAATCTCCAGCAGGTAATGGCACA
AGAGCCATCCGGCGCGGATCACGCAGCCAGTTCGCGTAACGGTGGCGGAA
GGTGCGATGTCGAGTTCGGCGGTGGCAGCAGTAGTGGAACGCCCTCTCTC
ATCGTTTCAAGCGTGCGACCACCCTGTCACAGTGCGAACCGTGAACAGCG
GCAGCCGCAAAAGCTGTCACCGCCGCTGCCGCAACACGCGCCAGAGCAGC
AGCTTCTCCCGGAACGACAGCATCACCGCCAGCAGCAAGAAGAGCGCTTT
GGTTTTCAGTTGCGGGGGCCGGTGGGTCCGACATGCGACAGCAACGTCTC
CGACAGCGAAGACGAAGACGAAGTGGCGAGCATTTTCGCTACAGATCAAG
CTTGTTTCGGCATCCTTTAG
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